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LotjaGi2g1v0179400.1

Overview

Field Value
Gene ID LotjaGi2g1v0179400
Transcript ID LotjaGi2g1v0179400.1
Lotus japonicus genome version Gifu v1.2
Description Yellow stripe-like transporter 12; TAIR: AT1G65730.1 YELLOW STRIPE like 7; Swiss-Prot: sp|Q9SHY2|YSL7_ARATH Probable metal-nicotianamine transporter YSL7; TrEMBL-Plants: tr|I1MQH0|I1MQH0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0179400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:60106122..60112643) extracted from Lotus japonicus Gifu genome v1.2.

CCCTTTCTGAAAATCAGTTTGATGTCAAGATTAAAGCCTTCCGAACCGATAATGCGAAAGAGTATCTCGCCTTTAAGCCC TTTCTCACTCAGTGTGGTACTCAACAAACTTAACTGCCTGAGTTCTCCTTACATACAGGAGGTTAAGAAAGCTCATACGT GATAAAACTGAAGATAAAGAGAGGGGGGTGGAATTTATACCCACAAACATGTGTGAACTTTCTTCGTGGACCCCAGCCCC TTCAAACGCTGTTGCTTTGGAATGGAAAACTATGATTGACCGTGTCCAAACTAAAGAAAATTTGATATGGAGGAATGTTG CAATAGATGGTATATGTGAGCTTTGTTCTTCTTCTACTGAATCTACATCTCATTTGTTTTTCTCTTGCCCCCAATCATGG AAGGTGTGGTCAAAAATAAATACTTGGTTGGGGTATGAAATTGTGCTCCATGATGATGCTAATTAAGGACAACTTTTTGC AACTTCCCCCTATGTGGCGTCCACGAAGGAGAGGATGCTGGGTAATTTGGGTTGCAGTTATATGGCAGATATGGATGGGG AGGAACTCCAGAGTGTTTAGGGGAGAGGACTTGATTCCAATGAAGTCTTTGAGAAGGCACAATTTAAGGCTTGGCTGTGG CTAAGGGCTAATGCTGGAAATTTCTCATTTTCCATCTATGAATGGACACATGATCCATGCTCTTGTCTTGATGCACTGTG ACTTATTCTGATATGGCTGATTTAGATTCTGAGAATTCTAAATTCTCTAGGTGTCTGGTGCTGTAAGGATTGGAGATTTT TTAGTCCTTGGAAAATGTTTTGATTGCAAAGGAGGGGAGCTGGCATCTCACTTACTAGTTGGACTGTTTCAAGGTCTTGG AAACTATTTATATATGATGTTGTTTTGTCAATTGCTGCTGGTGCATCTCACACGGGTAGAATTCTAGAGAGATGTTAGAG AGAGAAGGTGTGAGAGGGTGGGAAGAACACAAGGTGAGTAAGGGAAATGGCTGGACTATGGTGGCTGATAGGAGAAGGGT CCCTAAGGAGAGCCCCTCTGAACCTCACATTCCATGGTAACTGCCAATACTTTTAAAGTCACTCAGTTGGAATTTTCTAC ATGCCAAATATTAAAAATAAAACCTACTCACTTGGATCAAGTTCTCTAATTAGTATATGATGCGTCAAACTGAAATAATA TTATAAAAGATTTTGAAATAAGGTTAGCAGTAAGACCATCTTACTTAGATTCCTAGGTCTTGGAAGTGGTTCATCAATTG ATAAACCATGAATCCAATGGATGATATCTCTCCCTTTTAATAATACAATTATTATGGAAAGAAAAAATAAAAGAATTAGT AAATTGTATGGTGCCAATAGAAGATAAATACTATTGCATGGAAAAAATCCATGCAACTCACGTGTCGCTCAGACCTTTCT AAGCCACCAATTGTTAGATGCCAAAGAATAGTCAAATAGAGCTTCATGTGGAAAAAACACAAAATGATAGAACTAAGCCA TATACAAACATAGAGTACTTCACCTAAAGTCTTTTCAAGTGCCAATTTAGACCACCTATTTTCCAAGTTCAAATTTTCAG CAAACTTGTTGGAATAAAAGTAAACACCAACATTAACCCAATTGGAATTCCTACTACATATACAAACCTTGTAGATTCCG AACTTGCATCCACAAAATTGCGATCTTACCCTCTGCACTTTCCAATCCAACACATGGCCCAAAACGGGAATCAAGACAGG GTAATGGATGATTATGATCATCACCACCATGACCATGACCATGCAAGTGGTGATGAATATGATGAACATGAGCACAAGCT GAAAGGGAAGAAAGAAGAAGAGCCTTCTGTGGAGAGGGTGTTCAAGCACCTGCTTGTTCCTTCATGGAGGAACCAGCTGA CAGTGAGGGCCTTTGTGGTGAGCTTTGCACTCAGCATACTGTTCTGTTTCATTGTCATGAAGCTCAACCTCACCACTGGG ATTATTCCTTCACTCAATGTCTCTGCTGGACTTCTGGGATTTTTCTTTGTGAAGACTTGGACTAAGTTCTTGGAGAGGTC TGGGTGGTTGAAGCAGCCTTTTACTAGGCAGGAGAACACTGTCATCCAGACCTGTGTTGTTGCCTCCTCTGGCATAGCCT ATAGTGGTAACCTTATCTTACCTTCTCTGTTTCATCACTCTTTATCTTTCTCAATCTGTTCTTATTGCTATTTTTTTTCA GTTGTTACTGTGACCCCTTTGTTTAGTTCATGGGTTTAAATATGATCTGGGATTGATTATAGCATGTTTCGATCAACTTA TTTTTCGTCAGAATCAATTCTGACACCTAGAAGCTACTCAAGGAAGCTTCTCCGCATAATTAATTTTGGGTTTAGACTCG ATTGTAGAAGGATTTCTTAACATGTTAATCTTGCTAGCATGCTTCTTGAATTTAAATTGACAAGAAGTTTTGAATAATTG GATTTTCGGTCCTGTTTTAGATTCTACTGGATGCTAATTTGAGCTAAGCATGCTTTCTAGTGTTGAATTGACTATTAATT TGATTCCTCCTGAAGAAAATCGAATCATTTGCTCCCGGTTCAATCATTTGGAAAAAAAAAAACATCAACAGATAAAATCT AAGTAGTTTTTTTTTTGATAAACAAAATCATGCATTTATTGGAGGTACAGGGTACCCCAACCTGTAATAAAGAAAGCAGC AGAACTGCAAATAAAATCTAAGTAGTAATACCAGCACAAAGATGTTAACCATTGAAATGGTGAGTGTGTGTTTGAATTTT TATTAGCAAGGCTTGCAGCATATTTGGGTCCTTCTAGAATTGATTCTACAGCCAAAATCAATTCTGAGTGCCAAAATCAA TTCTGAGTGTCAGAATTGATTTTGAGAGAAAATAAGTCGATTCAAACATGCTATTAAAAGCACTTTCAGTGGCAAGTCAG GTCTCACAATCAATTAAAAAAAGGGGTTTTCCATAAATGTATCTGAAATCCAAACACAAACCAAGTATAACTAGTCCAGG TGCTCACCTTCGTGATATGGTAAATAGTTTTACTATTTTTGTGCTTTTTTCTAGTTTCCAAATTCTAAAGTTAACTCCCT CTGTTTGAAAAGAAAAGGTTACTTGCTAGTTGCTACTTTTCACTATCAATCACTGCCTACATGATAATGAACCTATAAAT AGCAACAGGAGAAGAGCTGAAAAGTCACCTATTTCATCCTGTCATGAAAGATGAAGCTTTTGTTTTCAAACTTCAAATCA TACCAGCAAATTTGGAAAATTTTGGGCTGCATTAATTACTAGACCAAATGTCCTGACTCAGGAAGCATAGAAGCCAAAGT TTCAATTTACTTTTTCTTTTTTTCCTTTCTTTTTTGTGCTGAGCTAAAGTTTCAATTTACTTTTTCTTATCTCATAATTA CTTTTTTTCAAGATCATCTGTCATGTATCATTTTGATTGTATTGTATCTGAACCTGAAAGGAAACTATTTAATCTTGCTG AAATGTTGTCATAGTAATTTAAGAAAATTGGAATCTTAGAAAGGAAACTCTAGAGTGAGATTTTGATGTTATAACTGTAA AAGGAAGCCTAAGCTGGTTATGATCAAGAAACAGTTTTTTATTGATGTCATGATGATTGACTCACTTAAATGAAAAAATT CTTGTCATGACAGGAGGATTTGGGAGTTACCTCTTTGCAATGAGTGAGCATGTAGCCAAGCAATCCTCAGACACCAGTGA TTTTAAGGACCCAAAATTGGGGTGGATCATTGCTTTTCTCTTTGTTGTTAGCTTTCTTGGCCTCTTCTCAGTTGTACCTC TAAGAAAGGTAATGACACATTCTTCAAATATTGAGACTTCAGTATCCATAAATGAATATATTAATAATTTAGAAAACTTG ATGAGGCTTGGATCAACTTTTCTTTTTACAGACTCAGTTTTGGCACCTAGAAGCTACTCACAAAAGCTTCTCTCCATGAT TGATTTTGGCTTCAGAATCAATCGAATCATAGAATCATTTTTTTACCTTTGCATTTTTCAGTCTTTGAAAATCATTGCTG AAACGTATTTTTAAGTAATAAAATGATTTATTCTTACTGCTTTACCTCTAGCAATTATTTATCAGTATCCCTTGCCATGC CACAGTCTTTGATTAATTTTTTGCTTCTACTATTGGATGTAGATTATGGTCATAAAATTCAAATTGACATATCCAAGTGG TACAGCAACTGCCCATCTCATCAACAGCTTCCACACTCCTCAAGGAGCCAAACTAGCAAAGTAAGCACTGTAGCAGACTC CATGTTACTAGAAGTGAGCGCATGAGGAGTTAGACATCCATCATACTAATTTACTGCTTCTTTTCCACTCTTCCAGGAAG CAGGTGAAAGTGTTGGGAAAATTCTTTGGATTGAGCTTCTTCTGGGGTTTCTTTCAATGGTTCTACACTGCTTCTGATGG ATGTGGATTCCAAGCCTTCCCCTCACTGGGGCTCAAAGCATTTGGAAACAAGTACGTTTTCATATCACATCACATCCCTT CATTTTAAATCAAATTTATGAATCCTAAGTTAAAACATAATTAAACATAAACAAGAAATTTATCCCACTTAGTGAAGTCG GTTATATGAATCACATGATCCATTTTGAAGATACAACGAGTTTAACATTGTCTGCCACAAGCCTAACACAGCATTCCACC TATATCCTGGCTTAGACCGACTATGACACAGCATAGGTGGATTTTATTCTAAGATAAAAACGTGCATTAATATGAACTTC AGATTAGTCCAACTAATTTGTATGTGTCAATCTAATCTTTACTTATTTGCAGGTTTTATTTTGATTTTGCTGCAATCTAT GTTGGAGTGGGAATGATTTGCCCATATATCATAAATATCTCAGTGCTCCTTGGAGGAATTCTTTCTTGGGGAGTAATGTG GCCTCTCATAGAAAACCAAGAGGGTCACTGGTACGATAAGGGCCTCGGTGACGGTAGCCTTCACGGAATCCAAGGATATA GGGTAAGTTTCCTGATGCAAAGCACCTATAGAGTCACATTAGTTTGCATAGTTTCTAAGGTATATCAATTAATAGGATTC TCCTTACATCTTGAGTTCAGGTATTTATAGCCATAGCCATGATCCTGGGAGATGGTTTATACAACTTCGTAAAGGTGCTA TCTCATACCTTATTGGGTTTGTATTATCAAATCAAGGAGAAACAAAGGGAGAATGTTCTTCCGGTGGCTGATCAGGACTC TCCCTCGAGTCAGCTAACTTACGATGACCAGCGCCGCCAGCAATTCTTTCTTAAAGATCAGATTCCACCATGGTTTGCAG TTGGAGGCTATGTTGCTATTGCTGCCATCTCAACCGCCACTCTTCCACACCTCTTTCCCCACCTAAAATGGTATTACATT CTTGTTATCTACCTAGTTGCTCCCGCCTTAGCATTCTGCAATGCTTATGGTTGCGGGCTAACAGACTGGTCCCTAGTATC CACCTACGGGAAGCTCGCCATCTTTACAATCGGAGCGTGGGCCGGTGCATCACACGGTGGAGTTCTTGCTAGCCTAGCAG CCTGTGGAGTGATGATGAACATCGTTTCCACCGCCTCTGACCTGATGCAGGACTTCAAGACCGGCTACCTTACGCTGTCT TCACCGCGCTCCATGTTTGTGAGCCAAATACTTGGAACAGCTATGGGATGTGTGATTTCTCCTTGTGTCTTTTGGATTTT CTACAAGGCCTTTCCTGACCTTGGGACACATAAAAGTGAGTACCCTGCCCCAAATGCAATTGTGTTCCGCAACATGGCCA TACTTGGGGTACAAGGCTTCGGTTCGCTACCCAAAAATTGCCTCATGCTATGTTATATCTTCTTTGGTGCTGCCGTTGTG ATAAACTTGATCAAAGATTTAATGGGCAAGAGAGGGAGGTTCATACCACTTCCAATGGCTATGGCAATTCCTTTTTACAC AGGGCCTTACTTTGCCATTGACATGTGTGTTGGAAGTTTGATATTATATGTCTGGGAAAAGGTTGACAAGGCTAAGGCAG ATGCATTTGGACCAGCTGTAGCTTCTGGTTTGATATGTGGGGATGGAATATGGACACTTCCTGCTTCAGTACTTGCTCTT GTTGGAGTTAAGCCACCAATTTGCATGAGGTTCTTCTCAAGGGCCACAAATCAAAGGGTTGATACTTTTTTAGGGAATTA AGGTCAAGTTTGAAATGAGTTTGTATATTTTTAGAAATATGCTTGCAGCACACTCTTCCGTATATTCTATCTGATTAGTT TGCTTTTCAAAATGTCAATACATTTTCTAAAAGTTCGGCCAAATATATTGTCTTCTTAAAAAAAACCAATCACAAAATAT GTTGGAGAGTGTTTAAACGAGGATGTTGCTAGCTTTCCTTGTCTTTTTACTGTTTGAGAGTTGTTACTGCCTTGTAAATG GGCTAAACATCACTTAAGTTTGCTCTTTAAACTTCTTTAGCC 

CDS sequence (LotjaGi2g1v0179400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCCAAAACGGGAATCAAGACAGGGTAATGGATGATTATGATCATCACCACCATGACCATGACCATGCAAGTGGTGA TGAATATGATGAACATGAGCACAAGCTGAAAGGGAAGAAAGAAGAAGAGCCTTCTGTGGAGAGGGTGTTCAAGCACCTGC TTGTTCCTTCATGGAGGAACCAGCTGACAGTGAGGGCCTTTGTGGTGAGCTTTGCACTCAGCATACTGTTCTGTTTCATT GTCATGAAGCTCAACCTCACCACTGGGATTATTCCTTCACTCAATGTCTCTGCTGGACTTCTGGGATTTTTCTTTGTGAA GACTTGGACTAAGTTCTTGGAGAGGTCTGGGTGGTTGAAGCAGCCTTTTACTAGGCAGGAGAACACTGTCATCCAGACCT GTGTTGTTGCCTCCTCTGGCATAGCCTATAGTGGAGGATTTGGGAGTTACCTCTTTGCAATGAGTGAGCATGTAGCCAAG CAATCCTCAGACACCAGTGATTTTAAGGACCCAAAATTGGGGTGGATCATTGCTTTTCTCTTTGTTGTTAGCTTTCTTGG CCTCTTCTCAGTTGTACCTCTAAGAAAGATTATGGTCATAAAATTCAAATTGACATATCCAAGTGGTACAGCAACTGCCC ATCTCATCAACAGCTTCCACACTCCTCAAGGAGCCAAACTAGCAAAGAAGCAGGTGAAAGTGTTGGGAAAATTCTTTGGA TTGAGCTTCTTCTGGGGTTTCTTTCAATGGTTCTACACTGCTTCTGATGGATGTGGATTCCAAGCCTTCCCCTCACTGGG GCTCAAAGCATTTGGAAACAAGTTTTATTTTGATTTTGCTGCAATCTATGTTGGAGTGGGAATGATTTGCCCATATATCA TAAATATCTCAGTGCTCCTTGGAGGAATTCTTTCTTGGGGAGTAATGTGGCCTCTCATAGAAAACCAAGAGGGTCACTGG TACGATAAGGGCCTCGGTGACGGTAGCCTTCACGGAATCCAAGGATATAGGGTATTTATAGCCATAGCCATGATCCTGGG AGATGGTTTATACAACTTCGTAAAGGTGCTATCTCATACCTTATTGGGTTTGTATTATCAAATCAAGGAGAAACAAAGGG AGAATGTTCTTCCGGTGGCTGATCAGGACTCTCCCTCGAGTCAGCTAACTTACGATGACCAGCGCCGCCAGCAATTCTTT CTTAAAGATCAGATTCCACCATGGTTTGCAGTTGGAGGCTATGTTGCTATTGCTGCCATCTCAACCGCCACTCTTCCACA CCTCTTTCCCCACCTAAAATGGTATTACATTCTTGTTATCTACCTAGTTGCTCCCGCCTTAGCATTCTGCAATGCTTATG GTTGCGGGCTAACAGACTGGTCCCTAGTATCCACCTACGGGAAGCTCGCCATCTTTACAATCGGAGCGTGGGCCGGTGCA TCACACGGTGGAGTTCTTGCTAGCCTAGCAGCCTGTGGAGTGATGATGAACATCGTTTCCACCGCCTCTGACCTGATGCA GGACTTCAAGACCGGCTACCTTACGCTGTCTTCACCGCGCTCCATGTTTGTGAGCCAAATACTTGGAACAGCTATGGGAT GTGTGATTTCTCCTTGTGTCTTTTGGATTTTCTACAAGGCCTTTCCTGACCTTGGGACACATAAAAGTGAGTACCCTGCC CCAAATGCAATTGTGTTCCGCAACATGGCCATACTTGGGGTACAAGGCTTCGGTTCGCTACCCAAAAATTGCCTCATGCT ATGTTATATCTTCTTTGGTGCTGCCGTTGTGATAAACTTGATCAAAGATTTAATGGGCAAGAGAGGGAGGTTCATACCAC TTCCAATGGCTATGGCAATTCCTTTTTACACAGGGCCTTACTTTGCCATTGACATGTGTGTTGGAAGTTTGATATTATAT GTCTGGGAAAAGGTTGACAAGGCTAAGGCAGATGCATTTGGACCAGCTGTAGCTTCTGGTTTGATATGTGGGGATGGAAT ATGGACACTTCCTGCTTCAGTACTTGCTCTTGTTGGAGTTAAGCCACCAATTTGCATGAGGTTCTTCTCAAGGGCCACAA ATCAAAGGGTTGATACTTTTTTAGGGAATTAA 

Protein sequence (LotjaGi2g1v0179400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAQNGNQDRVMDDYDHHHHDHDHASGDEYDEHEHKLKGKKEEEPSVERVFKHLLVPSWRNQLTVRAFVVSFALSILFCFI VMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLERSGWLKQPFTRQENTVIQTCVVASSGIAYSGGFGSYLFAMSEHVAK QSSDTSDFKDPKLGWIIAFLFVVSFLGLFSVVPLRKIMVIKFKLTYPSGTATAHLINSFHTPQGAKLAKKQVKVLGKFFG LSFFWGFFQWFYTASDGCGFQAFPSLGLKAFGNKFYFDFAAIYVGVGMICPYIINISVLLGGILSWGVMWPLIENQEGHW YDKGLGDGSLHGIQGYRVFIAIAMILGDGLYNFVKVLSHTLLGLYYQIKEKQRENVLPVADQDSPSSQLTYDDQRRQQFF LKDQIPPWFAVGGYVAIAAISTATLPHLFPHLKWYYILVIYLVAPALAFCNAYGCGLTDWSLVSTYGKLAIFTIGAWAGA SHGGVLASLAACGVMMNIVSTASDLMQDFKTGYLTLSSPRSMFVSQILGTAMGCVISPCVFWIFYKAFPDLGTHKSEYPA PNAIVFRNMAILGVQGFGSLPKNCLMLCYIFFGAAVVINLIKDLMGKRGRFIPLPMAMAIPFYTGPYFAIDMCVGSLILY VWEKVDKAKADAFGPAVASGLICGDGIWTLPASVLALVGVKPPICMRFFSRATNQRVDTFLGN 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 43 43 -
Phobius 1 61 61 -
PANTHER 4 699 696 0.0
PANTHER 4 699 696 0.0
MobiDBLite 9 43 35 -
TIGRFAM 60 676 617 8.3E-115
Pfam 61 675 615 1.4E-154
Phobius 62 84 23 -
TMHMM 62 84 23 -
Phobius 85 89 5 -
TMHMM 88 110 23 -
Phobius 90 109 20 -
Phobius 110 129 20 -
Phobius 130 153 24 -
TMHMM 131 153 23 -
Phobius 154 172 19 -
TMHMM 173 195 23 -
Phobius 173 194 22 -
Phobius 195 233 39 -
TMHMM 234 253 20 -
Phobius 234 254 21 -
Phobius 255 265 11 -
Phobius 266 286 21 -
TMHMM 279 301 23 -
Phobius 287 292 6 -
Phobius 293 313 21 -
Phobius 314 332 19 -
Phobius 333 354 22 -
Phobius 355 404 50 -
TMHMM 405 424 20 -
Phobius 405 428 24 -
Phobius 429 433 5 -
TMHMM 434 456 23 -
Phobius 434 453 20 -
Phobius 454 459 6 -
Phobius 460 478 19 -
TMHMM 469 491 23 -
Phobius 479 483 5 -
Phobius 484 502 19 -
Phobius 503 522 20 -
TMHMM 523 545 23 -
Phobius 523 545 23 -
Phobius 546 579 34 -
TMHMM 576 598 23 -
Phobius 580 601 22 -
Phobius 602 621 20 -
TMHMM 618 640 23 -
Phobius 622 642 21 -
Phobius 643 653 11 -
Phobius 654 680 27 -
Phobius 681 703 23 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0179400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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