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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0181800 |
| Transcript ID | LotjaGi2g1v0181800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cotton fiber expressed protein; TAIR: AT5G54300.1 cotton fiber-like protein (DUF761); Swiss-Prot: sp|Q4P3I9|VPS10_USTMA Vacuolar protein sorting/targeting protein 10; TrEMBL-Plants: tr|I1L3W7|I1L3W7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0181800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:60350516..60354129) extracted from Lotus japonicus Gifu genome v1.2.
GACAAATACAAAAAGGAAAATGTAATTTGAATCGGTGGGTAATTTATCAATGTCTTGGTATGAGAAAGATAAGAGAGCCT CATGCTTCTTCATTTAAATCCCCTCCTCTAGATCCCTGACTCTCCTGTGGTCCTTCCTCTATTCTAAAATGGAATTTTTG TTGTCTCTGCATCTACCTACAGCACCTGAAACAGTGAAACCTGAAAGCTCTCTCCCTTTAAAACCCTTCTTTCTTTCTCT GTATTATTGAGAGGACTGAAGTTCTAGGCCTCTATCTTATCAGTTTTCCCTTTCTTTCTTCTTTCTGTCCCTTTTTCTTC TGTTTCATGTTCAAAGATCCTATATAAGCCACCACAAATCTTGCTTCTGCAACCCCTAGTTAACATCCTGATTAAACTTT CAGAACTTTCTTATTCTCTGTTACAGTAACCCAGCTTCATGATTTGATAGTCTCATACCCTCAGTTTCTCAAGCTCTAGT CTCATCTTATTCTTCTGAAGACCTGACCTTGTTTATTTCCTAGTTGATAAATTCCATCCTCTGAAAAATTTTAATTTCTG GGGCAAATTATTTTCACTTTTTCTAGTTCAAAATCAAGGTTTTCTGAAGGGTGATCAATTAGTAGTGTTTCAATCTGGTA AGGATGGATCTTTTTCACAACCCATCTTCTCTAAAACCAAACAGATTTGAAACAGCTATATGGGTCTCAAAGCTTGTGAT CATGTCCATGGGGATTGCCTCCATTCTTGTTTTGTTGAAAGTTACCATAATCCCCTGCACATTCGACCTTGTTCTCTCTA CTCTCCCTCGTCTTTGGGTCTCAGCAAGAAGCTGGCTAACACTTCCATTCCTCTATGTTATAGTCAACTTCATCATCCTC ACCATTGCAGCTTCCTCCAACTTCTTCCCCCACAAAAGCAGCAGCAATAACCCCATATCCTTTTCCTCCTCCGTTTTGGA CACTGCCACCTACATCACAGAGCCAGAAGAAGAACATGAAACCAAAGAGCCCAAGGAAGAAGAAGAAAAAGAGGTTGAAG AGGTAGTAATAGAGGAAGTGGACCAAGAAGAAGAAGAGAAAGGGGTACTGAATGACTCTGTTTTTACTTTCAACAAATTC ATCACTGACGACCCATCACCGGAAAATTGCACCAACGACTATTTCTTGCCGGATTCCGGTGACAACGATGACGACACACT GGAAGCGACGTGGAGGGCTATAATGGAAGGACAGGGAAAAACGATGAAGCCACAGCTGAAGAAGAGTGATACATGGACTG CGAGGATTGTGAAAGCAGAGCCATTCAGAAACAATGGTAAAAGGGGTGGTGGTGGTGGTGAGGATCCAGTGGCTTGGGCT CAGAAGGAGCTGACAAAATCTGACACTTTCAACGACAGAGCCTCGTTGAGGAGGGAAAAATCCATGAGCCCTGAGGAGTT GGCACTCAGATCAGAGGCTTTCATCAAGAATTTCAACAATCAGATGAAGTTGCAGAGGCTGGAATCTTACCAGCGTTTCA AGGAAATGGTCAGTCGCGGTCGTGTTTGAATTTGATGAGGTTACTCTTTCCTTTTCACCAGTCACAGTGAAAATATTTAG CAAAGTGACAAAATCTCTGGAAGTTTATTAACCAATTGGAGGTACATGTGTAAAATATGTTCTTAATTTTAGTTTAGTGT TCTGTTCTCAGTTCTGCATTGCATTCAGCACATTACCAATTCTATGATGTATCATGCAGAACTTTACTGTTAGCTATTAT GTACTTTTCTTGTTAGAAAACAATTATTAGCATGCACCTACCAATTGAATGTTTTGGAATAGATAATCCTTGTCTTGTAG TTGATGACAACTGTTCGCATATACTAAAAGTGAATTAGTAATGGTAGTTAAGTACAGCACTTTGGTGTGGAATCTTTTTA TGTGTAAATTAAACATAATCAAATGTTATGTTTAACTTTGATGCTTCTTTTCTACTTGGTATGACCTCAGAATTGATTTA ATAGAGCTTCTTGTATACACAAATATACATTTCAGCATTTATATGACGCTATGCCTATGTCTCTAAAAGTGTTCCTGTGA TTCCATGGTATCTATGACATCTTATACTCTTGAAGCATTGGGCTTTTAACACCTGGCCACAATATGAATAGTTGTTTGCA CAATTAAATGAATCTAGCCTTGATTAGGTTGTTCCACCTACAATACACTTGATTGGTGTGTAGAAAAATGTAATCTAAAT TAGTGCATATATGGCATGTTTGGGTTAGATTTGCTTTCCTCAGAATAAACTTTGACTGCCAGAAATAATTTACAGAAGCT TTCACGTCTTGCAGGATTTTCAGTGTACATATTTTTGCTGCTGAGACTGTGTGAAGAAGGCAAGACATGAATCAGACAAG GTGGCCTTTTTTCTTGTTACATAGTGGACATAAGTTAGTTTCTCCGTAACCTGTTGTGCTCTCTTTCTATTGTCTAGGTC TTTCCTCTGCATGTTTTCCTAGCTATTCAGAAGTCTAGTGTTTCTTATATTACAGAATAATGTTTGTATTGATAATGTAA TTACCCTAGGCATCAGTGTAAGAGAAATATTTGAAATTGCATGAGCAATTTCTCCAATTCCTTTTTACCTTTTTAATTAC AAGGAAACAGACATACGAGGACGGGGGAGCAAACCTGGACCACAAACTAATTGCATAAAGTTTGAAAGTTCTCCCATAAT TGATCTAAACCCTAAATCAACTGCAAGAAGAATTGTGAGTAACTTCAAGGCGTCATAATTGATTATGAGGAGAAGATCTA AGAGTGCTATAAATAAACAACATCACCTATAGCGGATGAAGATTCTCAGTTTCTAATTGTTGTACCTTTCATGAGTGATT TTCAAATAATATGACATAATTTAATTTATGAGACAGGGAAGGGAAGAGGACATTGAATAGGGACATAAGAGTTGAGTCTC CCCTATATAACAACATTACACATGCAAGGAGGCGATAGACTGATAGTTGCTGTTGTTTCTCGATTGGCCAAACTCAGGGT CAGCGGGTTGGACTAAGAGACCGATGGACCCCCTTTGGTGTGTTGTGGAGGAAAGGAACTAAAGCTTTTTTTTCTTTGGC GGGTGGAATGGATTGAATTAAAGTGAATGAACTAACATAAATTGAACGTAACGCTAACAGCAAGTTGTCCCTTCAACTGT GCATGGTTGCATGTCACTTCAATTAAGATATGCATCTTGGCTTAAACAAATTGGTTATGCTGTCAATATCACCAAAGGTT AAATTTGTTTAGGGATCAAAATATGAGATTAGCACAATACAGTTTAGTGACCTTAAACACGCACATGGATCTAATCTGTC AAGTATGGTATGGACCATTATAGATGTTGTAGGTCTTGCTGTTTCTTTAAGCATTCATTTTAATTATGAGCTAGCCAAAG GTCGGAAAGCAAGTTCCCTCTTTACATGTCAGAGAAATTTGAAACTGAAGAGCCCCATGTTTCTTCGTTGTGTCACAAAC TTTGAGTGGTTTATGTGTACAGACTGCAGAACCTCAAAAAAGAAGTAGGACCTTTGTACAATTTGAAATATAAACCAGCT GGTGAATGTTTTTT
CDS sequence (LotjaGi2g1v0181800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTTTTTCACAACCCATCTTCTCTAAAACCAAACAGATTTGAAACAGCTATATGGGTCTCAAAGCTTGTGATCAT GTCCATGGGGATTGCCTCCATTCTTGTTTTGTTGAAAGTTACCATAATCCCCTGCACATTCGACCTTGTTCTCTCTACTC TCCCTCGTCTTTGGGTCTCAGCAAGAAGCTGGCTAACACTTCCATTCCTCTATGTTATAGTCAACTTCATCATCCTCACC ATTGCAGCTTCCTCCAACTTCTTCCCCCACAAAAGCAGCAGCAATAACCCCATATCCTTTTCCTCCTCCGTTTTGGACAC TGCCACCTACATCACAGAGCCAGAAGAAGAACATGAAACCAAAGAGCCCAAGGAAGAAGAAGAAAAAGAGGTTGAAGAGG TAGTAATAGAGGAAGTGGACCAAGAAGAAGAAGAGAAAGGGGTACTGAATGACTCTGTTTTTACTTTCAACAAATTCATC ACTGACGACCCATCACCGGAAAATTGCACCAACGACTATTTCTTGCCGGATTCCGGTGACAACGATGACGACACACTGGA AGCGACGTGGAGGGCTATAATGGAAGGACAGGGAAAAACGATGAAGCCACAGCTGAAGAAGAGTGATACATGGACTGCGA GGATTGTGAAAGCAGAGCCATTCAGAAACAATGGTAAAAGGGGTGGTGGTGGTGGTGAGGATCCAGTGGCTTGGGCTCAG AAGGAGCTGACAAAATCTGACACTTTCAACGACAGAGCCTCGTTGAGGAGGGAAAAATCCATGAGCCCTGAGGAGTTGGC ACTCAGATCAGAGGCTTTCATCAAGAATTTCAACAATCAGATGAAGTTGCAGAGGCTGGAATCTTACCAGCGTTTCAAGG AAATGGTCAGTCGCGGTCGTGTTTGA
Protein sequence (LotjaGi2g1v0181800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLFHNPSSLKPNRFETAIWVSKLVIMSMGIASILVLLKVTIIPCTFDLVLSTLPRLWVSARSWLTLPFLYVIVNFIILT IAASSNFFPHKSSSNNPISFSSSVLDTATYITEPEEEHETKEPKEEEEKEVEEVVIEEVDQEEEEKGVLNDSVFTFNKFI TDDPSPENCTNDYFLPDSGDNDDDTLEATWRAIMEGQGKTMKPQLKKSDTWTARIVKAEPFRNNGKRGGGGGEDPVAWAQ KELTKSDTFNDRASLRREKSMSPEELALRSEAFIKNFNNQMKLQRLESYQRFKEMVSRGRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 8 | 299 | 292 | 7.6E-109 | – | |
| PANTHER | 8 | 299 | 292 | 7.6E-109 | – | |
| Phobius | 20 | 43 | 24 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 44 | 63 | 20 | - | – | |
| Pfam | 55 | 85 | 31 | 1.1E-10 | ||
| TMHMM | 63 | 85 | 23 | - | – | |
| Phobius | 64 | 88 | 25 | - | – | |
| Phobius | 89 | 301 | 213 | - | – | |
| MobiDBLite | 112 | 128 | 17 | - | – | |
| MobiDBLite | 112 | 131 | 20 | - | – | |
| Coils | 124 | 144 | 21 | - | – | |
| MobiDBLite | 200 | 243 | 44 | - | – | |
| Pfam | 269 | 298 | 30 | 2.3E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0181800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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