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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0183200 |
| Transcript ID | LotjaGi2g1v0183200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein; TAIR: AT3G17730.1 NAC domain containing protein 57; Swiss-Prot: sp|Q9FFI5|NAC86_ARATH NAC domain-containing protein 86; TrEMBL-Plants: tr|K7LEC2|K7LEC2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0183200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:60693463..60697316) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCACCGGTTGGATTACCACCTGGTTTTAGGTTCCATCCAACAGATGAAGAGCTTGTCAACTACTATCTCAAGAGGAA GATCAATGGCCAAGAAATTGAGCTTGATATCATTCCTGAGGTTGATCTTTACAAATGTGAGCCTTGGGAATTAGCAGGTC TCCTACTTCTTCTTCCCTATTACTCCACTTCAATCTTCCAAATACTTTTTTCTCAATTATCCACATGTCATTGGAAAATT GGCTTGCACATGCACATTTTTATCTCACACACATAAACACATTCAAACACAATAATAATTTTCATTTTTTAATAGCATGC AATTGAAGTAATACTTACCGCCACTCTTCAAAACCAACCATACATGAGACTTTTACTTCATACGGCTCCTAGTTCAACCA AATCAAGACAAACTCTGAATACTAGATATGACTTGAAAATAACAAGGGTCAAGGTTGGCTAGTGAGACGATGAAGGATAA GCTTCGTCGCGAGGGAAACACATTTGTGTATGCCATTTATCTAGTTATGAATTAAGAGCCACAGTATAGGATAGATAATC TTTATGAGGAAACTACCTCCAATATAGGACCAAAAGAGCAATCTTTTTGGTGGATCATGCATGTATTTGACATAACTTCT GTGTTTTACTTCTCCTTCACATATTTTTTTCATCTTAAGCAATGAGTATTTGATATCTACTATGAGTACAATTAATATAT GTTTTTAATTTTCTCAGAGAAATCATTTTTGCCAAGTAGAGATCCAGAGTGGTACTTCTTTGGACCCAGGGATAGGAAAT ACCCAAATGGTTTCAGAACAAATAGAGCAACTAGAGCAGGGTACTGGAAGTCTACTGGGAAAGACAGAAAAGTTTCATGC CAAAGCAGACCAATTGGTATGAAGAAGACTCTGGTATACTACAGAGGTAGAGCTCCTCAAGGAATCAGAACTGACTGGGT AATGCATGAGTATCGCCTCGATGACAAAGACTGCGAGGACACCACCGGATTGCAGGTATATGTGTGTTTGTTTTTCTGTC AAACGCACATCCCAAATCAGTTTGAATGTGCTTTTGCCAATCGATGTCTTTTGTGTCATTGAAGTGAATATGATTTTGGC CACTAACTTAAATACAAACACACTTATAGAAACTATGCACACACATTACCAAGTACTGTTAGAAGCTCTTAATTCCACCC ATACAATCAAAATTGATTTAAAAACAGTAATGATACTTGAACATACAAACAATGCAGACACCTAACAAATATCTTTTTTT TCCCATCTCTCTCCTTACATATATCACGTCAATTACTTATCTCTCTTCTCTACATTTCTCACTCTGAGTTTCTGTTGGAT GTCCCCCTTATGCGTATGTCTGCAGATCATTTTCAATTTTCAAAAGACAAACAAATTGAGAGGGATAAATAAACAGTCTA ATAGCAATTCTGGCAACAGCACATTCCATTAAACACAGTCAATTGAAAACTAAAAGTTGCATTGAAATGTTAAATAAGAT ATTAAAATCTTGCTAAAGTACTTATTTTAGCATTATCTTATATTTTGTATCAGGTACTATGCCTAATGAGCATTGTGATC ATGCTAGCATTATTAGTTCTTTTTAGATGTGTGAGAGTACCTTCACTCTTACAATTCATTATTTGTCATCTTTTTTCATA ATCAAGTGGCAGACTAGTGTAGTTGCAAGAGTTGCATTGTTATCTATCATATTATCTGCACAAGGAAGTCGAAGTTCCTT TTATTATTTCTAATGAAATCAGTGATTAACTACTTCAATTCTTTTGGCCTCTAATTTATTGCAAATAATGAAGTTAAATA AGTCAAGAATTGTAGTTAATGAAGCTATATCAAAGTTTTAGGCTTTGGAGAATATGGGGGGGGGGGGGGGGGGGTAGTTG GTGGTGAAAGATATGAGTATGAGAAGTTAGTTACAGCTTCCAAATTAAAAGCTTTACAAGTCACATCTTATGAAAGTAAA TGTTTTGTTCTGAACTAGTCTTTGGTGCCCACCTGATCCTTTACCTACTTTCAGAACTCTCTTTTGTTTGTGTGTGTATG CACAATTGTCACTACATATTAGACCTGAAAAGCATGAAGTTCGATGCTTAAGGCAGTGACAAAAGCATTTTTCATTGATT ATTTTTTGCTTCTCCTTTACACCAAAGCAAGAGTGAAATCTCAAAGAATAAATTATATGTATATAAATAGCTTTAGTTCC ATAACTGTGATCAATCATAACATGTTTCGATCAACTTTTTTTTTTATCAGAATCAATTCTGATACTTCGAAACTACTGAC AAAAGTTTCTCCCTATAATCACCAAAGCTTCTCCCTACAAATTCAGACTTTAGAATGAATTGTACAATGGTTTCCAAAAT GCACTTAATCAGAGTCACACACTAGAAATTCAGTGAGTAGAACTTGAAACTGGAGAAACTAATTAATGAAATTTTGGAGA GTATGTTTGGACAGTAGAAGAACGTGAAAAACTGCATGGTGTGCATGGAAAGCTTGACCTTTTATATTAGTTTTACTCCT CTTCACTCTCTCTCTCTCTCTCTCATGCATATTACTTTATCTTTGTTTATTATATGTACTCTATAAACGTATAGCTGACA TATTCGTTACTTGAGTTGCTCTAATACCTCTATATGACAAAGTTCTACTGCACATTGTGCTTTTTTTTCTTTCAATAATG CAGTGTAATGAGACAAAAGTCCTATCCTCCTTATGATCCATATTCTCTTCTTGGTTAAAATTCTTTTAGCTATAGGTCTT TTTGAATTTTTATTGTTATGTGTTCTCTAATCTCCAGTTTCTGATCTAGAATTATTAGATTCCCATCACTTTCATTTTGT GTCGGTCACTTTTTACTTTATTCTCATACACCAAAATACAGACCAATATACTATAATATACCCCAAAAAAGAGAGAGAGT GATGGGCAAACCAGTCAATAACCAACCAAATAATGTGTTAACCTCATGATTATGCCAGAATATAATGGGATTTAACAGTG GAATGAAGACATAATACACTTAACCTTTTTAGCAACCTAAAAGTGTCCATAGTATTAGTAGCTAGTAACACTATTAAATA TTAATACTCTTAATAAGAAACATGTATGAAACATTTAGCACTTTTTGAATCTTCATAGGCACGTAATTATTCAGAGATTT TCCTTTGTTGATTTAGCACATTGCATAGATCTGAGCCTCAATTTTTGACTACACTGCTTTGATCATTCCAATTATACGTA GGCTAAAAGACCAAAAGCAATTTGATGGGGGAAAAAGTAGTTTAAGTTGGGTAATCCTACTCAATATTATTCTCTCTGTT CCTTTTTTTTTTCCTAGGCCTGCATTATTTATTTTGTATAACCTAAAAGAGTAGCCTTTCTCTACGGTGGACCAAGAAAA ATCTGGTTTATAAACTAAAATGGTTTATTTGCAAATTGATTTTAGCACGTAATAAGTATATTGTAAATAACATGTACTAA ATATTAGTAATAAAACACAGTTCATAACAAGCTCTTTACATTGCAGGATACTTATGCACTGTGTCGCGTGTTCAAGAAAA ATGGAATCTGCTCTGATATTGATCAAGAACAAGGGCAATTTAGCATGTCGCTAATTGAGAGCTCCCAAACCATAATCAAT GAGTGCGAAACCATGTCTCCGGACATACCGGGGGCGTCGACGTCTTCGTGCTTAGAAGAGGAAGACAAGGATGATTCATG GATGCAGTTCATTACAGAGGATGCATGGTATTCTTCTAATAATGTATCAATGGCTGGTGGTGAAGAACTCTCAAATGTTA CATTTACAAACTAA
CDS sequence (LotjaGi2g1v0183200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACCGGTTGGATTACCACCTGGTTTTAGGTTCCATCCAACAGATGAAGAGCTTGTCAACTACTATCTCAAGAGGAA GATCAATGGCCAAGAAATTGAGCTTGATATCATTCCTGAGGTTGATCTTTACAAATGTGAGCCTTGGGAATTAGCAGAGA AATCATTTTTGCCAAGTAGAGATCCAGAGTGGTACTTCTTTGGACCCAGGGATAGGAAATACCCAAATGGTTTCAGAACA AATAGAGCAACTAGAGCAGGGTACTGGAAGTCTACTGGGAAAGACAGAAAAGTTTCATGCCAAAGCAGACCAATTGGTAT GAAGAAGACTCTGGTATACTACAGAGGTAGAGCTCCTCAAGGAATCAGAACTGACTGGGTAATGCATGAGTATCGCCTCG ATGACAAAGACTGCGAGGACACCACCGGATTGCAGTGA
Protein sequence (LotjaGi2g1v0183200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRT NRATRAGYWKSTGKDRKVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKDCEDTTGLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 138 | 137 | 8.2E-99 | – | |
| PANTHER | 2 | 138 | 137 | 8.2E-99 | – | |
| SUPERFAMILY | 4 | 139 | 136 | 1.24E-59 | ||
| ProSiteProfiles | 6 | 145 | 140 | 55.282 | ||
| Pfam | 7 | 133 | 127 | 1.8E-40 | ||
| Gene3D | 15 | 144 | 130 | 1.4E-55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0183200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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