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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0189300 |
| Transcript ID | LotjaGi2g1v0189300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serpin-like protein; TAIR: AT1G47710.1 Serine protease inhibitor (SERPIN) family protein; Swiss-Prot: sp|Q9S7T8|SPZX_ARATH Serpin-ZX; TrEMBL-Plants: tr|I3S0S8|I3S0S8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0189300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:61963035..61965675) extracted from Lotus japonicus Gifu genome v1.2.
TATTTAATTGGGTTGTTAATTGAATAGACAATAACATTTTGGTTTATGTGGCAATAACACAAGACTGATTGGCCAGAAAT CTATTAATCTTAAAGGACCAATTGCAAGAAGCAAAACAGAAGGAAGCTTCTTTAGAAAAACGACGCTCTCAAGCAGAATC AGCACTCGACGAGCTTCTCTCCTTCCTCCGATTTGACACCGTCGACCATCTCAACACCTACTTCTCTCAGGGGATTTCCC CTGTGTTCTCCGACAAGGACGCTGATGCTGATGCTGATGCTCATCATCTGTCTTCTACCAATGGAATGTTTGTTGATAAA TCGGTTTCCCTTTCGTATCCTTTTAGACTACTTCTGGCTTATCAGTACAAAGCCAGTCTCGCTTCACTTGATTTTAAGAA CCGGGTACATATTATCTATCTATCCCTTTTTTTATTAAATTAAATTGTTTATGTAAAAAATATTAATTTGATTTTGATGT TTTTGGTTGGTTTTAAAGGGTGATAGAGTGCTCCATGATGTGAATTCATTGATTGAACGAAAGTCTAATGGCCATATTAC ACAGCTTCTTCCTCCCGGGACAATAACCAACTTAACCAGGCTTATCTTTGCAAATGCACTACGCTTCCAGGGTCTTTGGA AACACAAGTTTGATGGTCCAAGATACGAATTCTCATTTTTCCTCCTTAATGGCACCTCTGTCAAGGTTCCCTTCATGACA ATCAAGAAGAAGACACATTATATTAGAGCTTTTGATGGTTTCAAAATCCTCCGTCTTCCTTATAAACAAGGTAGAGATAG AAAACGCCGCTTCTCCATGTGCATTTTTCTTCCCGATGCCCGAGATGGACTTTCAACTTTAATTCAAAAATTGTCTTCCG AGCCTGGTTTCTTGAAAGGCAAACTTCCTCGCCGAAAAGTGCGAGTAGATGCCCTCGAGATTCCAAAATTCAATATTTCT TTTACATTTGAAGCTTCTAATGTGCTCAAGGAGGTTGGAGTGGTTTCACCTTTCTCCCCAATGGATGCATGTTTTACAAA AATGGTGGAGGTGAATTCTCCTTCGAATAATTTATGTGTGCAAAGCATATTTCACAAAGCTTTCATTGAAGTGAATGAAA AAGGCACTAAAGCAACAGCAGCCAGTGTTGGGTTTGCACCGGTACCACAATCTGCTCGGAGGCCTGGTCCTGTTATAAAC TTTATAGCTAACCACCCTTTTCTTTTCTTGATCAGAGAAGATTTTACCGGAACAATCCTCTTTGTTGGGCAGGTGCTCAA TCCTCTTGATGGATTACCGGTCGAGGTTAGCCATCTCTAATTGCATTTTATGATTTTGGACTGTTTGTGATTTTCTTTAT TATGCTGTAATTGAATAGTTTAAAATGGTGGAAGGATTAATTATAATTGTGTATGTACTGTTTTGCTCATAACCGCTATT TTTTTTTTATATTGTGGTAGCGGTACTGTTGTCACAAATTGAAGTTTCTCTATTGTCATTAAATTGGGAGAAAAAAGTTA GACTTTGTAGCTGACCACTCTTTCCTGTTCTTGATCAGAGAAGGCATGTGGTGGGCATCAGCTAGTACCAGCTATGCTGG TCAAGGTTAGCAATCTCAATATATGAATGCATTTCATGATTTGGACTGTTCATGATTTTCTTTATTGTGCTGTAATTAAT GGATAGTTTAAAACTGTGGAATGACTAATTATTGTAGTGTCCGTTGAATTTTCGTTGTTGAGTAGTGTTTCAGTTTGTTT TTTTAAACCTATTTGATTGAATCAATCTTGTATAGCAGTGGGCTCTGTTATTGTTTTGCTCATTACTTCGTTTTGTTTTA TAGTGTCTGCGTTGGCGTGGGACGCCTCTCTCCAAGGATGAAGATTTGATGTTTTTAGGCCTTTCGAGGGGGTGCCCACC ATCTCCAAGGGTACCTTCATCCGTGCTCTTCCCTGAAATTTCCCATGTTGATTGCAGGTCTGATCTTCGTGGCTGCGAAG GTTGGAAGGCACGAAGCCCTTCAGGCTTGTCTTGCGTTGATCCCTTTTCTGTCGCCTTGAGGGTTCCCAGTGATCATGAG TTTGTGGAGGGGCTTGCAGACCCTCCTTCTAAGGTTTCTCCTGCGTTACCCCGGGATAAGCTGCTGACCCCTAGGGCTAG GGGAAGACCAAAGAAAGTTGAGAATAGAGGAAGGAAGAGAAAGACTCCTACTGAGAGCTCTAATGGGATGACAATAGCGG ATGGAATAGCTGTTGATTCTGTTTCGAGAGGGAAGGAGCCGAAGGAGTTCTCGAAGCCTTATGGCGTTCTTACTAGGGCG AGGAGTGCGCTTCTAATGGGGAAGTGTTGTGGTATGAAGTATGACTGCACATATGACACTGCACTTTACTAGATTGCGGC CCAGATCAATGAGCGCAAATCACCTTTGGGGAACTGAGGTAGTTTTTTGGTTGGTGGTTGTTTTATTAAGGGACTTTTGG GCTTGTGGTTGCTTAGGGTTTTTGGGGGTTTGTCTGTAGGCTGGGGGTTTTTCTGTTTCCTTTTCCTTTTGGATTTTTCT GGGTTCGTGTTTGTTCTTTCTAGGCTGGGTTGTCATTGGTGTTATTGGCTTTTTGATGCCTTTTGAGGAGGCTTGTATAT C
CDS sequence (LotjaGi2g1v0189300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGTTGATAAATCGGTTTCCCTTTCGTATCCTTTTAGACTACTTCTGGCTTATCAGTACAAAGCCAGTCTCGCTTC ACTTGATTTTAAGAACCGGGGTGATAGAGTGCTCCATGATGTGAATTCATTGATTGAACGAAAGTCTAATGGCCATATTA CACAGCTTCTTCCTCCCGGGACAATAACCAACTTAACCAGGCTTATCTTTGCAAATGCACTACGCTTCCAGGGTCTTTGG AAACACAAGTTTGATGGTCCAAGATACGAATTCTCATTTTTCCTCCTTAATGGCACCTCTGTCAAGGTTCCCTTCATGAC AATCAAGAAGAAGACACATTATATTAGAGCTTTTGATGGTTTCAAAATCCTCCGTCTTCCTTATAAACAAGGTAGAGATA GAAAACGCCGCTTCTCCATGTGCATTTTTCTTCCCGATGCCCGAGATGGACTTTCAACTTTAATTCAAAAATTGTCTTCC GAGCCTGGTTTCTTGAAAGGCAAACTTCCTCGCCGAAAAGTGCGAGTAGATGCCCTCGAGATTCCAAAATTCAATATTTC TTTTACATTTGAAGCTTCTAATGTGCTCAAGGAGGTTGGAGTGGTTTCACCTTTCTCCCCAATGGATGCATGTTTTACAA AAATGGTGGAGGTGAATTCTCCTTCGAATAATTTATGTGTGCAAAGCATATTTCACAAAGCTTTCATTGAAGTGAATGAA AAAGGCACTAAAGCAACAGCAGCCAGTGTTGGGTTTGCACCGGTACCACAATCTGCTCGGAGGCCTGGTCCTGTTATAAA CTTTATAGCTAACCACCCTTTTCTTTTCTTGATCAGAGAAGATTTTACCGGAACAATCCTCTTTGTTGGGCAGGTGCTCA ATCCTCTTGATGGATTACCGGTCGAGAGAAGGCATGTGGTGGGCATCAGCTAG
Protein sequence (LotjaGi2g1v0189300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFVDKSVSLSYPFRLLLAYQYKASLASLDFKNRGDRVLHDVNSLIERKSNGHITQLLPPGTITNLTRLIFANALRFQGLW KHKFDGPRYEFSFFLLNGTSVKVPFMTIKKKTHYIRAFDGFKILRLPYKQGRDRKRRFSMCIFLPDARDGLSTLIQKLSS EPGFLKGKLPRRKVRVDALEIPKFNISFTFEASNVLKEVGVVSPFSPMDACFTKMVEVNSPSNNLCVQSIFHKAFIEVNE KGTKATAASVGFAPVPQSARRPGPVINFIANHPFLFLIREDFTGTILFVGQVLNPLDGLPVERRHVVGIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 295 | 295 | 1.9E-71 | ||
| SMART | 1 | 295 | 295 | 8.3E-31 | ||
| SUPERFAMILY | 1 | 295 | 295 | 3.8E-76 | ||
| Gene3D | 1 | 240 | 240 | 1.3E-82 | ||
| PANTHER | 2 | 296 | 295 | 2.3E-88 | – | |
| PANTHER | 2 | 296 | 295 | 2.3E-88 | ||
| Gene3D | 80 | 290 | 211 | 1.3E-82 | ||
| ProSitePatterns | 268 | 278 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular space | That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. |
Expression pattern of LotjaGi2g1v0189300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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