Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi2g1v0191400
Transcript ID	LotjaGi2g1v0191400.1
Lotus japonicus genome version	Gifu v1.2
Description	RNA polymerase II subunit A C-terminal domain phosphatase SSU72; TAIR: AT1G73820.2 Ssu72-like family protein; Swiss-Prot: sp\|Q558Z3\|SSU72_DICDI RNA polymerase II subunit A C-terminal domain phosphatase SSU72; TrEMBL-Plants: tr\|A0A1J7ITK5\|A0A1J7ITK5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0191400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:62284091..62288426) extracted from Lotus japonicus Gifu genome v1.2.

TATATTTTCAAGGAGTAAAACCATATTTAAGCCAAAATAGTAAAAGGAAACCATAGCAGACACTGCCCTGAACGCTGAAT GCAGAAATCGTTCCCCTAATTGCACCAATTTCTGTGTCTAGGTAGATCCTCAACCTCAATCCATTGTTCTACAGTCTACA CCTCAAATCATCATCTCATTTTCAAACACCAACAAGAATCGAACCAAATTTTCTGAAAAATTCAGGTTTTGTTAACATGA AGTTTCGTTACGCAATGGTGTGTTCTTCGAACCAGAACCGAAGCATGGAAGCTCACTTCCTCCTCAAGAGACAGGGCTTT GATGTGTGTTCTTACGGCACAGGTGCCCACGTTAAGCTCCCTGGTCCTTCCCTCAGAGAACCCAATGTCTATGACTTCGG AACTCCCTACAAGCACATGCTCGATGACCTTCGCAGAAAGGACCCTGAACTGTATCCTTTTGCTTTTCCTCTTTTTGCTT CAATTTCTTCCACCCTTTTGGTCCTTTAAGCTGAAGATTAAATTCAAGCTTGTGGGGTTGCTTTGAATGAAAAAAGTTTT AATTTTTTCTGGGACTCAGACAATTCACTTTTACAAATTGTGGGTAGTGTAAATTGCATTTTATTAGACAATTTGCTTAT TTTTTGATATTATTCTCTCAATTTTGTTATTACATTTTGATTTGCTGATATGGGTATCAAGCAAACAGATGAAACAAAAA TTGAAATTTTTATTTTTTTGAATATTTTTTGTATCTCTTTACTTTAGCTTTTCTGCATTTTGTTACACTGACTGAGGATA GTTTTGATGGAATGAAGAACTTTTCTTTAGCATGAATGAGACCAAGAAGTGGTCTGAATTTTGGATTAGTGTTGAATGAG GAAGGGTTAGGGTTGTATTGTCTTATTTAATGGTGTTTTGTTTGAGTGTGAAGACTGGAGAGTAAGATACTGAGTTTATG AATTCAGTGCTGATTTTGGAATGTAGCTGTTCTGCATTTGTTACTACACTGGCTGGGGATAGTTTTGATAGAATGAAGAA CTTCTCTTTAGCATGAATGAGACCAAGAATTGGCCTGAATTCTGTTTTAGGATTGAATGGGGGAGGGCTTAGGATTGTAT GACCTTATATGGTGTTTCGTGTGAATGAAGAGGGTGAGATACGGAGTTGAGGAACAGTAGCATATGCTATTTATATATCT ATCTAGTGCTGGACTTTTATCTTGGGTAATTAGTTTAATTTGCACTTGAATTCTTGTTCCCTTATTCTGTATGGTGCCCT GAATGTGACCTTAACAAGAGTGAAGCTACAAGCGAAATGGAATATTGCCGATGCTCAAAAGAAACTCAAACGTCAAATTG GCACCTCAAAGATGGCAAGAAAATGCAGCTGATGGCTCCTTTGATATAGTGTTCACATTTGAAGAAAAAGTATTCGATAT GGTTATTGAAGGTTGGTTTTCATTGCATCTAGTTTCATTGTTTTTGTCGCTCTCTCTTACTGTTCTGATGTATTTGAAAT TGAGTAACTTTCTAGATAGAATTTTACTTGCTAGCAATTACAAACTTTCTTCAATTTTGCATTATATTATGGATAGGACT AAGTGATAGCATATTTGGGCTTTAAACTGAGAGCCTTAGATATCTGTCAGTAGAGTCAAAGGATGTTTGGAATAGATGTT TATCAGCTACGACAATGTACTAAGTTTCAAACTAATGTAGCTGAGATTGTTTCTTTCCCTCTCTGCTCATTCTTATTAAC AGAAGGGTTGCAAATGCAGCGAATAATACTAGTTTTCTGTGTTTCACTTAAGGTTATCTTTTATGAAAGTTGGCTGATAG TTCCTTTTCTTCTTCAAGTGCGTATTATTTTTTTTTAAAGAAATTATTAAATGTAGGCATAAAAATTAGAGGCAAGTTAG CCATTAGAATTGCCCTATTCATGATTTGAATTATATGGTTCTGTATGATTTAGCAAATCAGCGATTTGTATCATGTGAAA ATCACAAATCACTTTGAATCATGCGATATATGCATTAAATAGAGCAATTCGTATCATTGATATGAATAGCATGATTTTTT AATTTTTTCCTTATTGCTCTTTTTTTCACCAATTCTTGTCAAAGAAATTAAAAGTCAAGTAAGTTTAAATTCTAAAATGA AAAGAAACTAAAGGAGTAACACTAAATGCTCCCAATCAATTATTTCATTGCTCTATTTTTTGACTTGTAATGCGACGTCT TATTATTTTGTTGAGGTATATGGTTAAGTTATTATGTCAATTCCTAACTTAAAACTATTACTTTAAGCACTATACATAAT TTATGTGACATATTTTAATTTATTTATGAATTTCCTATTGAATCTTATGATTTTTGTTGGAGGAGAAAAAGAAATCCCAT ATCAATTAGAGAAATATTGGACAATCCTCACGCATTAGTTAGATTTTGAGGTAGAGTTAGGCCCAGCTCGAGTTCTCAAG AATTTTATATAATTTATGATTCACGTTTCACCATTAAAATATTAGCTCAGCGCCTCAGCGGTTCATGATTTGAATTGGAA TTTGATAGCCACTGGCAAGATATACTGGTTCCCCATTAACGAGAGTTGTGCATACTTGATTACCTGATGTTTCATACTTC ATAACTTTGAACAATATATTTTTATTTTTAGCTAAAACTATTGTTTTATTGAAATACATGAAACTGTCTAGTACTTTTAG ACATGCGTGGAATACTGGAATGACGATCATGTTGTGTCTGTGGCTCTTCACATCTATCTGTCTGACAGCTATCTAACTTC AACAATGTGCAGATCTGCATAATAGAGATCATGTTTTACTGAAAACTGTGCTGGTAATCAACTTAGAGGTGAAGGATAAC CATGAGGAAGCAGCTGTAGGAGCAAGGCTTACTTTAGATCTATGCCAGGAGGTATGTTTCTTATGCACCACATATGTTCT ATGCATTCATAGCATAATAGTCAAAATTGTGATTAAAAGTGATCGCACGATTATGCAATTCATGGTTCCCTGGGCGATTA TAATTGCATCTGCTATCGTTTTATGACTCAATCGTGGGATAATCATAAGATGAATCGCATAAACTCACCAGAAAGTTTTT TTTTTATGCCATTTTATATGCATATATGTGTGTGTGAAATTATATGCATATATACCTATATTTATATTTACATATATGAA ATTTGCTGAATCTTACGATTATGCGATTTACGATTTTTACCCCCTTCTCGATTGAAGTCATAATCCCGATTTTGATACTA TGATTCATAGTATATATACACTATTTGTTGACTTATTATGTAACAAGCTTTGGACATGGGACACCAACACAACATCATGT GAATTATGTCTTGTTAGAATTTTATGTGTTCTGTTTTGGAAACGACCCTTTTTTAATGTTTCATGGCTTTCTGGGATATA TTTTATGCATAGATTGAAGCTGCTGAATCTTGGGAGGAGTCCATTGATGACATTATTGGTGGTTTTGAGAAGCAGCACCG GCGGAAGCTTTTGTACAGCATCTCCTTCTACTAAAATGGTCCAACTTCCCCTAGGAGATTGATCACTTAATGATTTGCTT TAACCATAATTTAAACCATTTCCATACATTCAGCACACAGATTTCATTTCAAACAAAACTAACGATGTATTGGCCGCTTC AAAATTTATAAGGATTAAACCATGGAAAAAAAGAAAAGAAAAGATTATGTTGCCTACCTGTTTTATCTGTTTATTAAGTG ATCTGGTATGGAATGAAATTTGTAGTATGCTTTCTTGTTTTGAAGTTTAGTTTGAAGGTTTTCCCAGTGTTTGCAGTTTA AGACAACGAGTTGTGTTCAATTGGATAAGTTCTGTATGTCTTTATGTTCTCTTTGTCCTTGTGAAACATTCGAGGGATGA AGTATAGTTCATGTAGCAGCCAATAGTAATAATGACAATACTAAGAATACTGGGGAGCTTGGAATAATGCATTTTCTTTC ACACTTTCACATGAGGAGCTTTGGAATAAAATTTGAATTATCACACTGTACAAGTTATTATTTAATATGCGAGTCTTCTA ATTGATTAGGCCAACCTAAGAACAAGCAGTTTTTATAAGTTTTTTAACAAGATTCTTAAAATAAAAGGGTAAAAGCAGCA GAATGATAGTTACATCTAAATTTATATATAAACAGCTCTAAGCCCAAGCTGTTTTTACTTTTTATAAGCGAATGCCTTCA TGTAGAAAGGAAATGAAAAAAGATTAACAAGAAAGGATTGTAAGACAAATAAAGATTTTTTGTCACAACAATCTTAAAAG TATACCCATTAAAGTA

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0191400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGTTTCGTTACGCAATGGTGTGTTCTTCGAACCAGAACCGAAGCATGGAAGCTCACTTCCTCCTCAAGAGACAGGG CTTTGATGTGTGTTCTTACGGCACAGGTGCCCACGTTAAGCTCCCTGGTCCTTCCCTCAGAGAACCCAATGTCTATGACT TCGGAACTCCCTACAAGCACATGCTCGATGACCTTCGCAGAAAGGACCCTGAACTCTACAAGCGAAATGGAATATTGCCG ATGCTCAAAAGAAACTCAAACGTCAAATTGGCACCTCAAAGATGGCAAGAAAATGCAGCTGATGGCTCCTTTGATATAGT GTTCACATTTGAAGAAAAAGTATTCGATATGGTTATTGAAGATCTGCATAATAGAGATCATGTTTTACTGAAAACTGTGC TGGTAATCAACTTAGAGGTGAAGGATAACCATGAGGAAGCAGCTGTAGGAGCAAGGCTTACTTTAGATCTATGCCAGGAG ATTGAAGCTGCTGAATCTTGGGAGGAGTCCATTGATGACATTATTGGTGGTTTTGAGAAGCAGCACCGGCGGAAGCTTTT GTACAGCATCTCCTTCTACTAA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0191400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKFRYAMVCSSNQNRSMEAHFLLKRQGFDVCSYGTGAHVKLPGPSLREPNVYDFGTPYKHMLDDLRRKDPELYKRNGILP MLKRNSNVKLAPQRWQENAADGSFDIVFTFEEKVFDMVIEDLHNRDHVLLKTVLVINLEVKDNHEEAAVGARLTLDLCQE IEAAESWEESIDDIIGGFEKQHRRKLLYSISFY

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.40.50.2300 View details on G3DSA:3.40.50.2300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2300	1	73	73	1.6E-14	–
PANTHER	PTHR20383:SF9 View details on PTHR20383:SF9 Search for proteins/transripts with this domain View external data on PTHR20383:SF9	1	193	193	4.7E-89	–
PANTHER	PTHR20383 View details on PTHR20383 Search for proteins/transripts with this domain View external data on PTHR20383	1	193	193	4.7E-89	IPR006811 Show description in modal box View details on IPR006811 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04722 View details on PF04722 Search for proteins/transripts with this domain View external data on PF04722	4	193	190	4.8E-80	IPR006811 Show description in modal box View details on IPR006811 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.2300 View details on G3DSA:3.40.50.2300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2300	74	193	120	1.2E-38	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004721 View details of GO:0004721 AmiGO InterPro QuickGO	Molecular function	Phosphoprotein phosphatase activity	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.	Subterm of View details of GO:0016791 View details of GO:0140096
GO:0005634 View details of GO:0005634 AmiGO InterPro QuickGO	Cellular component	Nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.	Subterm of View details of GO:0043231
GO:0006397 View details of GO:0006397 AmiGO InterPro QuickGO	Biological process	MRNA processing	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.	Subterm of View details of GO:0006396 View details of GO:0016071

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0191400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi2g1v0191400.1