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GO:0006397

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description MRNA processing
Full defintion Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Subterm of

Relationships

The relationship of GO:0006397 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCmah

Associated Lotus transcripts 93

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0050699.1
– Maturase K [Lotus japonicus] gi|13518419|ref|NP_084779.1|
GO terms
2
Lj0g3v0173949.1
– PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit 3-like [Cicer arietinum] gi|502091797|ref|XP_004489637.1|
GO terms
2
Lj0g3v0198159.1
– PREDICTED: protein RRP5 homolog [Cicer arietinum] gi|502167476|ref|XP_004514152.1|
GO terms
2
Lj0g3v0236759.1
–
GO terms
1
Lj0g3v0253549.1
– Beta-ketoacyl-ACP reductase-like protein [Medicago truncatula] gi|357475583|ref|XP_003608077.1|
GO terms
1
Lj0g3v0304109.1
– SnRNP core Sm protein Sm-X5-like protein [Medicago truncatula] gi|357511085|ref|XP_003625831.1|
GO terms
1
Lj0g3v0323479.1
– Intron maturase isoform 4 [Theobroma cacao] gi|508776847|gb|EOY24103.1|
GO terms
1
Lj1g3v1233760.1
– PREDICTED: RNA-binding protein 39-like isoform X2 [Cicer arietinum] gi|502136894|ref|XP_004502884.1|
GO terms
3
Lj1g3v1233760.2
– PREDICTED: RNA-binding protein 39-like [Cicer arietinum] gi|502139943|ref|XP_004503982.1|
GO terms
3
Lj1g3v1810140.2
– PREDICTED: lariat debranching enzyme-like [Cicer arietinum] gi|502133507|ref|XP_004501789.1|
GO terms
2
Lj2g3v0636830.1
– PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Cicer arietinum] gi|502164958|ref|XP_004513347.1|
GO terms
3
Lj2g3v0690360.1
– PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cicer arietinum] gi|502128553|ref|XP_004500001.1|
GO terms
1
Lj2g3v1589600.1
– PREDICTED: serine/threonine-protein kinase ppk4-like [Cicer arietinum] gi|502161785|ref|XP_004512283.1|
GO terms
2
Lj2g3v1599840.1
– PREDICTED: serine/threonine-protein kinase ppk4-like [Cicer arietinum] gi|502153776|ref|XP_004509458.1|
GO terms
2
Lj2g3v1734680.1
– PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Glycine max] gi|356534252|ref|XP_003535671.1|
GO terms
2
Lj2g3v3106340.2
– PREDICTED: crooked neck-like protein 1-like [Cicer arietinum] gi|502115405|ref|XP_004495196.1|
GO terms
2
Lj3g3v0478170.1
– Polyadenylate-binding protein 2-A [Medicago truncatula] gi|357457685|ref|XP_003599123.1|
GO terms
1
Lj3g3v1981190.1
– PREDICTED: splicing factor U2af large subunit A-like [Glycine max] gi|356517814|ref|XP_003527581.1|
GO terms
3
Lj4g3v0013170.1
– PREDICTED: survival of motor neuron-related-splicing factor 30-like [Cicer arietinum] gi|502126585|ref|XP_004499363.1|
GO terms
4
Lj4g3v0013170.2
– PREDICTED: survival of motor neuron-related-splicing factor 30-like [Cicer arietinum] gi|502126585|ref|XP_004499363.1|
GO terms
4
Lj4g3v2775580.2
– RNA-binding protein [Medicago truncatula] gi|357519763|ref|XP_003630170.1|
GO terms
3
Lj4g3v3114340.1
– PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cicer arietinum] gi|502128553|ref|XP_004500001.1|
GO terms
1
Lj6g3v1934110.1
– Intron maturase, type II family protein [Theobroma cacao] gi|508717617|gb|EOY09514.1|
GO terms
1
Lj6g3v1984610.1
– PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Glycine max] gi|356534252|ref|XP_003535671.1|
GO terms
2
Lj6g3v1984610.2
– PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Glycine max] gi|356534252|ref|XP_003535671.1|
GO terms
2
Lj6g3v1995980.1
– PREDICTED: THO complex subunit 7 homolog isoform X1 [Cicer arietinum] gi|502078212|ref|XP_004485873.1|
GO terms
2
Ljmitog3v0000100.1
– Maturase (mitochondrion) [Lotus japonicus] gi|372450292|ref|YP_005090474.1|
GO terms
1
LotjaGi1g1v0314500.1
– RNA binding protein; TAIR: AT5G09880.1 Splicing factor, CC1-like protein; Swiss-Prot: sp|Q5RC80|RBM39_PONAB RNA-binding protein 39; TrEMBL-Plants: tr|G7LC87|G7LC87_MEDTR CC1-like splicing factor; Found in the gene: LotjaGi1g1v0314500
GO terms
3
LotjaGi1g1v0314500.2
– RNA binding protein; TAIR: AT5G09880.1 Splicing factor, CC1-like protein; Swiss-Prot: sp|Q5RC80|RBM39_PONAB RNA-binding protein 39; TrEMBL-Plants: tr|G7LC87|G7LC87_MEDTR CC1-like splicing factor; Found in the gene: LotjaGi1g1v0314500
GO terms
3
LotjaGi1g1v0375600.2
– Lariat debranching enzyme; TAIR: AT4G31770.1 debranching enzyme 1; Swiss-Prot: sp|Q94K01|DBR1_ARATH Lariat debranching enzyme; TrEMBL-Plants: tr|I1JU50|I1JU50_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0375600
GO terms
2
LotjaGi1g1v0730200.1
– U6 snRNA-associated Sm-like protein; TAIR: AT1G03330.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q1H595|LSM2_ARATH Sm-like protein LSM2; TrEMBL-Plants: tr|G7KQV7|G7KQV7_MEDTR U6 snRNA-associated-like-Smprotein; Found in the gene: LotjaGi1g1v0730200
GO terms
1
LotjaGi2g1v0090100.1
– Cleavage stimulation factor subunit 3; TAIR: AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8GUP1|CTF77_ARATH Cleavage stimulation factor subunit 77; TrEMBL-Plants: tr|V7C004|V7C004_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0090100
GO terms
2
LotjaGi2g1v0128600.2
– Polypyrimidine tract-binding-like protein; TAIR: AT1G43190.1 polypyrimidine tract-binding protein 3; Swiss-Prot: sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3; TrEMBL-Plants: tr|I1JDD2|I1JDD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0128600
GO terms
3
LotjaGi2g1v0128600.3
– Polypyrimidine tract-binding-like protein; TAIR: AT1G43190.1 polypyrimidine tract-binding protein 3; Swiss-Prot: sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3; TrEMBL-Plants: tr|I1JDD2|I1JDD2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0128600
GO terms
3
LotjaGi2g1v0191400.1
– RNA polymerase II subunit A C-terminal domain phosphatase SSU72; TAIR: AT1G73820.2 Ssu72-like family protein; Swiss-Prot: sp|Q558Z3|SSU72_DICDI RNA polymerase II subunit A C-terminal domain phosphatase SSU72; TrEMBL-Plants: tr|A0A1J7ITK5|A0A1J7ITK5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0191400
GO terms
3
LotjaGi2g1v0319900.1
– RNA-binding protein 25; TAIR: AT1G60200.2 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|P49756|RBM25_HUMAN RNA-binding protein 25; TrEMBL-Plants: tr|A0A072UD88|A0A072UD88_MEDTR RNA recognition motif protein, putative; Found in the gene: LotjaGi2g1v0319900
GO terms
1
LotjaGi2g1v0319900.2
– RNA-binding protein 25; TAIR: AT1G60200.1 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|P49756|RBM25_HUMAN RNA-binding protein 25; TrEMBL-Plants: tr|G7K1E8|G7K1E8_MEDTR RNA recognition motif protein, putative; Found in the gene: LotjaGi2g1v0319900
GO terms
1
LotjaGi2g1v0319900.3
– RNA-binding protein 25; TAIR: AT1G60200.2 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|P49756|RBM25_HUMAN RNA-binding protein 25; TrEMBL-Plants: tr|A0A072UD88|A0A072UD88_MEDTR RNA recognition motif protein, putative; Found in the gene: LotjaGi2g1v0319900
GO terms
1
LotjaGi2g1v0319900.4
– RNA-binding protein 25; TAIR: AT1G60200.2 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|P49756|RBM25_HUMAN RNA-binding protein 25; TrEMBL-Plants: tr|A0A072UD88|A0A072UD88_MEDTR RNA recognition motif protein, putative; Found in the gene: LotjaGi2g1v0319900
GO terms
1
LotjaGi2g1v0319900.5
– RNA-binding protein 25; TAIR: AT1G60200.1 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|P49756|RBM25_HUMAN RNA-binding protein 25; TrEMBL-Plants: tr|G7K1E8|G7K1E8_MEDTR RNA recognition motif protein, putative; Found in the gene: LotjaGi2g1v0319900
GO terms
1
LotjaGi2g1v0336800.1
– Survival motor neuron protein; TAIR: AT4G16570.1 protein arginine methyltransferase 7; Swiss-Prot: sp|Q9VV74|SMN_DROME Survival motor neuron protein; TrEMBL-Plants: tr|I1J4R1|I1J4R1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0336800
GO terms
4
LotjaGi2g1v0353800.1
– Kinase, putative; TAIR: AT2G17520.1 Endoribonuclease/protein kinase IRE1-like protein; Swiss-Prot: sp|Q9C5S2|IRE1A_ARATH Serine/threonine-protein kinase/endoribonuclease IRE1a; TrEMBL-Plants: tr|G7K1A9|G7K1A9_MEDTR Endoribonuclease/kinase IRE1-like protein; Found in the gene: LotjaGi2g1v0353800
GO terms
2
LotjaGi2g1v0388200.1
– Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G22350.2 Ubiquitin C-terminal hydrolases superfamily protein; Swiss-Prot: sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2; TrEMBL-Plants: tr|V7BEY8|V7BEY8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0388200
GO terms
2
LotjaGi2g1v0388200.2
– Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G22350.2 Ubiquitin C-terminal hydrolases superfamily protein; Swiss-Prot: sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2; TrEMBL-Plants: tr|V7BEY8|V7BEY8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0388200
GO terms
2
LotjaGi2g1v0388200.3
– Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G22350.2 Ubiquitin C-terminal hydrolases superfamily protein; Swiss-Prot: sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2; TrEMBL-Plants: tr|V7BEY8|V7BEY8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0388200
GO terms
2
LotjaGi3g1v0059800.1
– RNA binding family protein, putative; TAIR: AT3G12640.2 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A; TrEMBL-Plants: tr|A0A1J7IG07|A0A1J7IG07_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0059800
GO terms
1
LotjaGi3g1v0101300.1
– Serrate RNA effector molecule-like protein; TAIR: AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE); Swiss-Prot: sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule; TrEMBL-Plants: tr|K7KJV0|K7KJV0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0101300
GO terms
1
LotjaGi3g1v0101300.2
– Serrate RNA effector molecule-like protein; TAIR: AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE); Swiss-Prot: sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule; TrEMBL-Plants: tr|K7KJV0|K7KJV0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0101300
GO terms
1
LotjaGi3g1v0124000.1
– RNA binding family protein, putative; TAIR: AT3G12640.2 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2; TrEMBL-Plants: tr|A0A1J7IG07|A0A1J7IG07_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0124000
GO terms
1
LotjaGi3g1v0307600.1
– Serrate RNA effector molecule-like protein; TAIR: AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE); Swiss-Prot: sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule; TrEMBL-Plants: tr|A0A151R5X6|A0A151R5X6_CAJCA Serrate RNA effector molecule isogeny; Found in the gene: LotjaGi3g1v0307600
GO terms
1
LotjaGi3g1v0313400_LC.1
– Serrate RNA effector molecule-like protein; TAIR: AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE); Swiss-Prot: sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule; TrEMBL-Plants: tr|K7L882|K7L882_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0313400_LC
GO terms
1
LotjaGi3g1v0313400_LC.2
– Serrate RNA effector molecule-like protein; TAIR: AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE); Swiss-Prot: sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule; TrEMBL-Plants: tr|K7L882|K7L882_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0313400_LC
GO terms
1
LotjaGi3g1v0313400_LC.3
– Serrate RNA effector molecule-like protein; TAIR: AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE); Swiss-Prot: sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule; TrEMBL-Plants: tr|K7L882|K7L882_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0313400_LC
GO terms
1
LotjaGi3g1v0313400_LC.4
– Serrate RNA effector molecule-like protein; TAIR: AT2G27100.1 C2H2 zinc-finger protein SERRATE (SE); Swiss-Prot: sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule; TrEMBL-Plants: tr|K7L882|K7L882_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0313400_LC
GO terms
1
LotjaGi3g1v0336200.1
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0336200.10
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0336200.11
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0336200.12
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0336200.13
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0336200.14
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0336200.15
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I1JZD4|I1JZD4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0336200.2
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I1JZD4|I1JZD4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0336200.3
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0336200.4
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A151SZL6|A0A151SZL6_CAJCA Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0336200.5
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0336200.6
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0336200.7
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.2 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I1JZD6|I1JZD6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0336200.8
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0S3SJF2|A0A0S3SJF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0336200.9
– Splicing factor u2af large subunit, putative; TAIR: AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A151SZL6|A0A151SZL6_CAJCA Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200
GO terms
3
LotjaGi3g1v0490500.1
– Serine/arginine repetitive matrix protein 1; TAIR: AT2G29210.1 splicing factor PWI domain-containing protein; Swiss-Prot: sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein 1; TrEMBL-Plants: tr|V7AGQ0|V7AGQ0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0490500
GO terms
1
LotjaGi4g1v0001700.1
– Survival of motor neuron-related-splicing factor 30; TAIR: AT2G02570.1 nucleic acid binding/RNA binding protein; Swiss-Prot: sp|Q6DEY1|SPF30_XENTR Survival of motor neuron-related-splicing factor 30; TrEMBL-Plants: tr|I3SL72|I3SL72_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0001700
GO terms
4
LotjaGi4g1v0001700.2
– Survival of motor neuron-related-splicing factor 30; TAIR: AT2G02570.1 nucleic acid binding/RNA binding protein; Swiss-Prot: sp|Q6DEY1|SPF30_XENTR Survival of motor neuron-related-splicing factor 30; TrEMBL-Plants: tr|I3SL72|I3SL72_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0001700
GO terms
4
LotjaGi4g1v0134700.1
– Kinase, putative; TAIR: AT2G17520.1 Endoribonuclease/protein kinase IRE1-like protein; Swiss-Prot: sp|Q9C5S2|IRE1A_ARATH Serine/threonine-protein kinase/endoribonuclease IRE1a; TrEMBL-Plants: tr|K7LEW9|K7LEW9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0134700
GO terms
2
LotjaGi4g1v0201400.1
– DWNN domain, A CCHC-type zinc finger protein; TAIR: AT5G47430.1 DWNN domain, a CCHC-type zinc finger; Swiss-Prot: sp|B9DFV2|PQT3L_ARATH E3 ubiquitin ligase PQT3-like; TrEMBL-Plants: tr|A0A151SKU9|A0A151SKU9_CAJCA Retinoblastoma-binding protein 6; Found in the gene: LotjaGi4g1v0201400
GO terms
3
LotjaGi4g1v0261700.1
– G-patch domain-containing protein; TAIR: AT5G23080.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; Swiss-Prot: sp|Q8GXN9|TGH_ARATH G patch domain-containing protein TGH; TrEMBL-Plants: tr|I1K185|I1K185_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0261700
GO terms
1
LotjaGi4g1v0406100.1
– RNA-binding protein 39; TAIR: AT5G09880.1 Splicing factor, CC1-like protein; Swiss-Prot: sp|Q14498|RBM39_HUMAN RNA-binding protein 39; TrEMBL-Plants: tr|G7LC87|G7LC87_MEDTR CC1-like splicing factor; Found in the gene: LotjaGi4g1v0406100
GO terms
3
LotjaGi4g1v0459500.1
– THO complex subunit 2; TAIR: AT1G24706.7 THO2; Swiss-Prot: sp|F4IAT2|THOC2_ARATH THO complex subunit 2; TrEMBL-Plants: tr|I1K5H3|I1K5H3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0459500
GO terms
3
LotjaGi4g1v0459500.2
– THO complex subunit 2; TAIR: AT1G24706.7 THO2; Swiss-Prot: sp|F4IAT2|THOC2_ARATH THO complex subunit 2; TrEMBL-Plants: tr|I1K5H3|I1K5H3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0459500
GO terms
3
LotjaGi4g1v0459500.3
– THO complex subunit 2; TAIR: AT1G24706.7 THO2; Swiss-Prot: sp|F4IAT2|THOC2_ARATH THO complex subunit 2; TrEMBL-Plants: tr|I1K5H3|I1K5H3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0459500
GO terms
3
LotjaGi4g1v0462000.1
– Pre-mRNA-splicing factor SPF27; TAIR: AT3G18165.1 modifier of snc1,4; Swiss-Prot: sp|Q949S9|SPF27_ARATH Pre-mRNA-splicing factor SPF27 homolog; TrEMBL-Plants: tr|I3SET9|I3SET9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0462000
GO terms
1
LotjaGi5g1v0083000_LC.1
– Kinase, putative; TAIR: AT2G17520.1 Endoribonuclease/protein kinase IRE1-like protein; Swiss-Prot: sp|Q7XIT1|IRE1_ORYSJ Serine/threonine-protein kinase/endoribonuclease IRE1; TrEMBL-Plants: tr|A0A0D9WYP0|A0A0D9WYP0_9ORYZ Uncharacterized protein; Found in the gene: LotjaGi5g1v0083000_LC
GO terms
2
LotjaGi5g1v0113300.1
– Polyribonucleotide nucleotidyltransferase; TAIR: AT3G11964.2 RIBOSOMAL RNA PROCESSING 5; Swiss-Prot: sp|F4J8K6|RRP5_ARATH rRNA biogenesis protein RRP5; TrEMBL-Plants: tr|I1JFV5|I1JFV5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0113300
GO terms
2
LotjaGi5g1v0133600.1
– Maturase K; TAIR: AT5G04050.1 RNA-directed DNA polymerase (reverse transcriptase); Swiss-Prot: sp|P05511|YMC6_SCHPO Uncharacterized 91 kDa protein in cob intron; TrEMBL-Plants: tr|A0A0L9UK50|A0A0L9UK50_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0133600
GO terms
1
LotjaGi5g1v0289300.1
– Polypyrimidine tract-binding-like protein; TAIR: AT1G43190.1 polypyrimidine tract-binding protein 3; Swiss-Prot: sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3; TrEMBL-Plants: tr|I1NH38|I1NH38_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289300
GO terms
3
LotjaGi5g1v0289300.2
– Polypyrimidine tract-binding-like protein; TAIR: AT1G43190.1 polypyrimidine tract-binding protein 3; Swiss-Prot: sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3; TrEMBL-Plants: tr|I1NH38|I1NH38_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0289300
GO terms
3
LotjaGi6g1v0272200.1
– Maturase-like protein; TAIR: AT5G46920.1 Intron maturase, type II family protein; Swiss-Prot: sp|P38456|YMF11_MARPO Uncharacterized mitochondrial protein ymf11; TrEMBL-Plants: tr|A0A1J7H0Y5|A0A1J7H0Y5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0272200
GO terms
1
LotjaGi6g1v0272200.2
– Maturase-like protein; TAIR: AT5G46920.1 Intron maturase, type II family protein; Swiss-Prot: sp|P38456|YMF11_MARPO Uncharacterized mitochondrial protein ymf11; TrEMBL-Plants: tr|A0A1J7H0Y5|A0A1J7H0Y5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0272200
GO terms
1
LotjaGi6g1v0309000.1
– Maturase-like protein; TAIR: AT1G30010.1 Intron maturase, type II family protein; Swiss-Prot: sp|P38456|YMF11_MARPO Uncharacterized mitochondrial protein ymf11; TrEMBL-Plants: tr|A0A1J7HMP3|A0A1J7HMP3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0309000
GO terms
1
LotjaGi6g1v0321900.1
– Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G22350.1 Ubiquitin C-terminal hydrolases superfamily protein; Swiss-Prot: sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2; TrEMBL-Plants: tr|I1L9D9|I1L9D9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0321900
GO terms
2
LotjaGi6g1v0321900.2
– Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G22350.2 Ubiquitin C-terminal hydrolases superfamily protein; Swiss-Prot: sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2; TrEMBL-Plants: tr|V7BEY8|V7BEY8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0321900
GO terms
2
LotjaGi6g1v0324900.1
– THO complex subunit 7 like; TAIR: AT5G16790.1 Tho complex subunit 7/Mft1p; Swiss-Prot: sp|Q8LDS5|THO7A_ARATH THO complex subunit 7A; TrEMBL-Plants: tr|A0A0L9VF74|A0A0L9VF74_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0324900
GO terms
2
LotjaGi6g1v0333800.1
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I3T7G4|I3T7G4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333800
GO terms
3
LotjaGi6g1v0333800.2
– Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I3T7G4|I3T7G4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0333800
GO terms
3

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0006397
Biological process MRNA processing 1 1.08