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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0195600 |
| Transcript ID | LotjaGi2g1v0195600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SURF1-like protein; TAIR: AT3G17910.1 Surfeit locus 1 cytochrome c oxidase biogenesis protein; Swiss-Prot: sp|Q9SE51|SURF1_ARATH Surfeit locus protein 1; TrEMBL-Plants: tr|G7KQ87|G7KQ87_MEDTR SURF1-like protein; Found in the gene: LotjaGi2g1v0195600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:62970143..62976153) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAATCAATTTTAACAAATTTTATGGGGACTAAAAAAATATTTAACTGGAAGGTCCACCGCAGCACATCAGTGCACTC GCACGCAGCCTGTTTTGCCCCCTTAAACCCTTTACGCTTCTTCCTCCATTGTTACTTCTCACATCGATTGTCCCAAATGC CAACTCTTGATTCCGCCGCCAGAATGCTAGGGGAGCTCCGACGCGCCGCCGCAGTATCCTGTGGATGTGCCAGCTCCGGC CATGTTCTCACAGTTAGGCATTTCAGCTCCGCCGCCGCCGCTGTTTCCTCTGCTACTGATTCCGACCCGGCACGTTCATC TTCCTCCGATTCAAAGGGTATGCACTGATTCAGATTCTTTTGATGGATTCTCCATGTGGGTCAATCTGGTTTTTTGCAAT GCTGAAGGCACTCGCATAAAAAATCGATCTTTTTTCTATGATCATTGATGGGTTTTTTTTTTAATATCAAAGGAAAAGCG TCTAAATGGTTGCTGTTTCTACCTGGGGTGATGACATTTGGCCTTGGGACCTGGCAGTTTTTTAGAAGAGAAGAAAAGGT TGGTATGTTTTTGGCATTAGATTCATGATAAGCAGGAAAACTATAGTTGCCAACAGTTGTTTTTCACATGCTCGAACACA TGGAATTTAGTACCACTGATTTTGAAATAAAGGTGTGAATTGTGTTGTTTGATACTTAAGTGAGTTGTGTAAGAGAAAAT TATGTGAATGTAACATCACCGAATAGTTATAGTGTACCTATGTGAATAAGGAAAAAAATTGTGCTTAATGATGAGGATCA AGTACAGGGTTCAGTCCACAAGCTTAGTGGATTATGGTCTCAAAATTAAATTTTCTGTGCTACTGCAATTCATCCTTGGA CATATGTGCTGATCCGTGATCTTTCTCTAAACTCTTATGGGGGGTGAATACTTGTATGTATCAATTTTTTGTGATCGTCC ATATTGTGAGATTTTGAATCAATTTAGGTTGATATTAGTGATCTAGGAAACTTGTGCAAGTTTGATGCAGGCTTGTTAAT AGCGTGCTATAGCGGCGCAATAGCCTATAGTGTAGCGCCCTAGGGGTTCACTGCTACTCCACTATTCACCGCTATTTGCC GCTATAGCGCCGCAATAGCGCTCGAAATAGCGTTTTTTGGGCTTGCCGCTACACTACGCTATCCGCCATTAACAACCCTG GTTTGATGTACTAAGAACTTATAATATTTCAGCATTTTGCTCTTCACCCTTTGAATTTTCTGATATTACCTCTTTGTGTC ACTCATCTTTATGTCTTAAACCATCAAGGAGATTCTAATCATAGGCTCATGTTTTGGATTATTGCCTTCTTCATTTCCAT TCTGAACCATACATGGATGGCTTAAAGACATAATATTATTAGAATTTTATTACGTTATAATAGTTTACTACTAGGTAATT TATATTGGATAATGGGGATATAAGGTAGCAGGTGTTGATACCACTCATGTTACAACCTTTTTGTTCTAAATATTCTGTAA ATAAATTTAAGGTTGAGTTTATTTATATTAAGTTTTTAGATTCCATGTTTATGTATTCGCTGTGCAGATTAGCTCATTGA AAATCCCTTCCATCTTACCATGATACAGATTAAAATGTTGGAGTATCGTGAGAAGAGATTGCAAATGGAACCATTGAATT TCAGTAGTGCTTATCCATCAAATGAGGAATTAGATTCTGTAGAATTCAGAAAGGTTGTTTTCAAAGGAGTTTTTGATGAT AAAAAATCAATCTTTGTTGGACCACGTTCAAGAAGCATTTCAGGAGTTACTGAAAATGGCTACTATGTTATAACACCTCT TATGCCAGTTCATAATTATCCTAACAGGTAAAGCATAATTATTCATAGCTTTCTCGATGAAAGTCACACAAGAAGTCATT AGAATTTTTTTATTGCTGACATTGCATTGTAACTTTGTTTATTATTAGTTTAAATATAACCAAATTCGAATTTGAAACTT ATATATTACTTCATCATTGGAGACTAGAGCAATAAAAGTTTTCACTTTCAGTAGGTGTTCTAAATAGATGGCATTGTTCC TTGACATTACGTCCTGTTTAGAACATTTGTTCAAATTACAAAGGATGAAAACTTCAGTATAATTTTATTCAAACTGTTGC TCATGATGTTCAATAGTACTATTTATTGTGAAATGGATGTTTACTATATACCAACTTTTACTTTATAATGATCTTTATTG TTTTGAAACTGTGATAAGTACAGAAATATATAGAGTAATAGTCACACAAATCCTGGATGTTCGAGAGCCAGTTCTCTCCC AATATCTTGACTACAGAATTCCTGAATGCCTTAAACAATCAGTCTTGTTCCCTATTTATAACAGATCCTTATCATTTAAT TTTAAAATATAATGACTGTTCATAACTACTCCTAACAGACACATCTGTTCAGGCCTAACTGCCATGCCCATAACTGCTCA GCAACTGATGTGCACGTTTCTGTGTAACTGTCATGCCTGTTCCCGATCCAGAGTCCAGGTTTGTTGGGTATTACCCCTTG GGTTGCACCTGTTGGGTCGCTCTCCCCTGTATCAGCCATGGTGGGTTGCGCCTCCTATCAATACCCCGCCCTAGAAGATC CACCTTGTCCTCAAGGTGAAAATCAGGAAAACGTGACTGGTGGCTTTGGCAGTGGTCTTCGAGTCACCTTGTTCGACGTC AACTGCCATTGCTGCATCTGCAAGAGGGCGCTCATCCTTGCCTCCGTCTTTGATGTGAACTCCGCTTTTTCCATCGCATG CATTCCCTGGTCGGGCGGTTCTGGAGGGGGTCGCCTGACTTGACTTTTTGGACATTCTTGGCCTCTACTGCACTGGCCTT CTGGCTTTGCATTCTGGGTTTCTCTGCCACCAAAATTTCTCTTTTCTGCTTGATCTTGCTGCTCCAACCAACTGTACGCA TCATATTCCCCACCATAGAGAGGAATCTCCAATTTGCGCCTATCTTCTTCTAAGGTTGCGCCTAGATTTCCCTTTTCTCC TCATGTGTGCATTGCTTGTTTCCTTCTTATGTAAACTTTGGTGATTGGTGCCCTCCTTCCGTTATCTTCCATCACAAGAA CTTTGAGGCCTGCAAAGTTTGTAGTTCCATGAGTTACTGGAACTTTAGGTACAAATGGTAGTTTAAACTCATTTGACCAG TCTGGGATCCCAAGTTTTACGGCGAAGGTGACTGCACATCCTTTACCAATGCCTTCGCTTCCAATCCAAATACCCCCTTC CATGAGATTTACAAACATCCTACGAATTGAAAGGCCGAGTCCACTTCCAGCAGAATTTCTTGTTGCTGGTGATCAGCTTT GTGCAAACTTAGTAAGTAACTTTGGGATATCTTGTGGATTAATTCCTGATCCTGAATCTTTTACCTGCACTCGCAGATAA AAGTGTCCATCACTTGGCACTGGTAGGAAGGTAGGAGTTCTGGTATCCCTGAAGGATTCAGCCTTTGCAACAAAAGTGGT AATGGAAACTGGCATCTTCAAGCTGTGAAAGATCCAAAACGTCATCATTCAAAGTAGCCACACAAATCCTTGATGTTCGA GAGCCCGTTCTCTCCCAATATCTAGACTACAGAGTTCCTGAATGCCTTAAACAATCAGTCTTGTTCCCTATTTATACCAG ATCCTAATTATTTATTTTTAAAATATAATAACAGTTCATAACTACTCCTAGCACACATCTGTTCAGGCCTAACTGCCATA ACTGCTCAGCAACTGATGTGCCTGTTCATGTGTAACTGTTGTACCTGTTCACGTTCCAGGGTCCGGGTTTGTTGGGTCGC TCGCACCGCCTATCAAACTATGCCATACCAATCTTCATTACTTCTGAATGAACTTTAAGCTTTTCCTTTTGGGGAAAGAT TAATATTCACATCTTGTTGCCCAATACGTATATAAATATCCCTGGGTGCTTTATGTCAACTGGGCCTGAATAAACGTTGC TAAACTTCTGAATTTTGAGGGCTTGGGATATATTGGATTTATTCTAACACGTTATAAGCTTTAATCTTTTTTTAAGGTAC TCAACACTTTATAAGCTTGAAGTCCTAACATTTCTACTATAACATACCTATATCATATTATCATATCAACAATAAATTTT TCTTGATCTTAACCAATCAATTGCTAGTTTTGCATACTTCACTGCCACTGGTTTTTGGATTGAAAATATTATTATTTCTG AGTTTCAACACTTTTTATATTGTACATTGTTGTTTCTTCCAGTGTAGGTTTTCCAATTTTAGTCAATAGAGGTTGGGTTC CTCGCAGTTGGAAAGATAAATTTTTAGAGGATTCACAAGATGAACAGTTTGCGGATGAACTTCCTTTCCCTTCACAGGCT GATGGAACTAGATCTTGGTGGAGATTTTGGGCTAGAAAGCCTGTCATAATTGAGGTTCTCTCTCTCTCTCTCTCTCTGTA GTCATTTTCCCATTCATTGTTTCATACATAAAAATTGTGAATTCAAACTTATTTTGTCCAACTTACAGGATCAGGCCCCT TCTGTAACACCTATAGAAGTAGTCGGTGTAGTTCGTGGAAGTGAGAAGCCAAGCATATTTGTTCCACCAAATGATCCTGG GTCTTCCCAGTGGTTTTATGTTGATGTTCCTGGCATTGCCCGTGCCTGTGGCCTTCCAGAAAATACTATTTACGTTGAAG ATATTAACGAGAATGTCAACCCGAGTAATCCTTACCCTGTTCCCAAGGATGTCAATACCTTGATTCGAAGTTCGGTTATG CCGCAGGACCACCTAAACTACATATTGACATGGTTTGCAACTTACTTTTCTCCCATTAGTTACTCCTTTCATGCATTGTA GTTGTATTATTGGTAGCCTTCCTTCTTTTAATTTGGCTTACTGTTACAGTCTTACTGTACCAGCTTTTGTATAATTAACA GATGCAATACTAATTAGTTTACTACCAAATGATGCTGCTGCCAATAAAGGATAAACAGCTTAATTAAGCGCTTATGACAA TAAACGTTTATTGCTAAAACTTATTGAAATTGGCTGAAAAAAATGTTATATATTAGCATAAGCTCTTATTCATATGTTAA TATGAATATAAGCTCAAAACAGCTGATAGGTAGGCCATAAGCTGTTTGCATAAGCTCTCCCAAACACTTGGATAAGCGCT TATGCTATAAGATAAGCTCAAATAAGCTCTTCCAAACGGGGCCTAGTTTTGTTGCTATACACTAAGATATTTCCTTGCTG CATAATGTGTGATTCCTCTTTTATTACTATGATTATTCAGTTTATCTTTGGTGTTCTATCAGATTTCTACAGCAAGCATT TTTCTGACATTTTCTCATTTGTATTTGAAATAGGTATTCACTTTCTGCAGCCGTTACTTTCATGGCTTTTAAGAGGCTCA GACAGAAAAGTAAGCGGAGATAGCAAAGACATTACTGTTACAGTTGAAATTTACAGGCACATACACCCTCATTTCGCATC TAGATATAACTATCTCTTTGGAGGATTGTCTTCCCTATCTTTTTCTTCAAATCTCAGTTTTCAAGAATCATTTTCAAGCA TCTTCAGCTATTCAACTGAAGTCTTTTCAGAAAGGTACCCACCCACATAAAAAACAATGGTGAAGTGAAAGTGGAACAAT ATTTACTGAACAAAGTAATTTAATGGGGATATAATAGTGGATATTCATGATCTGAAAGGTTGATTTTTTATTAGAATTGC AAGTACTGTCTGTGGTTGTATAAGGATGTGATTATATTTGGATTTGTCTGTAAGGTTAGGAGGTTATGATATGCTTCAGT CTTACTGACTTATTGTTCAACTAAAATAAATGAGATCAAACTCTAGTCAAGCTTTTGAAGAGAAGCTCAACAGTATGGCA TTGTGAGAAACTGTTTTACTTGCCAATAAATAATAATACTTGAACCTACACCGGTTCAAAGGTTCGATAGTTGAACCGTG GTCGGACTGAT
CDS sequence (LotjaGi2g1v0195600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGACTAAAAAAATATTTAACTGGAAGGTCCACCGCAGCACATCAGTGCACTCGCACGCAGCCTGTTTTGCCCCCTT AAACCCTTTACGCTTCTTCCTCCATTGTTACTTCTCACATCGATTGTCCCAAATGCCAACTCTTGATTCCGCCGCCAGAA TGCTAGGGGAGCTCCGACGCGCCGCCGCAGTATCCTGTGGATGTGCCAGCTCCGGCCATGTTCTCACAGTTAGGCATTTC AGCTCCGCCGCCGCCGCTGTTTCCTCTGCTACTGATTCCGACCCGGCACGTTCATCTTCCTCCGATTCAAAGGGAAAAGC GTCTAAATGGTTGCTGTTTCTACCTGGGGTGATGACATTTGGCCTTGGGACCTGGCAGTTTTTTAGAAGAGAAGAAAAGA TTAAAATGTTGGAGTATCGTGAGAAGAGATTGCAAATGGAACCATTGAATTTCAGTAGTGCTTATCCATCAAATGAGGAA TTAGATTCTGTAGAATTCAGAAAGGTTGTTTTCAAAGGAGTTTTTGATGATAAAAAATCAATCTTTGTTGGACCACGTTC AAGAAGCATTTCAGGAGTTACTGAAAATGGCTACTATGTTATAACACCTCTTATGCCAGTTCATAATTATCCTAACAGTG TAGGTTTTCCAATTTTAGTCAATAGAGGTTGGGTTCCTCGCAGTTGGAAAGATAAATTTTTAGAGGATTCACAAGATGAA CAGTTTGCGGATGAACTTCCTTTCCCTTCACAGGCTGATGGAACTAGATCTTGGTGGAGATTTTGGGCTAGAAAGCCTGT CATAATTGAGGATCAGGCCCCTTCTGTAACACCTATAGAAGTAGTCGGTGTAGTTCGTGGAAGTGAGAAGCCAAGCATAT TTGTTCCACCAAATGATCCTGGGTCTTCCCAGTGGTTTTATGTTGATGTTCCTGGCATTGCCCGTGCCTGTGGCCTTCCA GAAAATACTATTTACGTTGAAGATATTAACGAGAATGTCAACCCGAGTAATCCTTACCCTGTTCCCAAGGATGTCAATAC CTTGATTCGAAGTTCGGTTATGCCGCAGGACCACCTAAACTACATATTGACATGGTATTCACTTTCTGCAGCCGTTACTT TCATGGCTTTTAAGAGGCTCAGACAGAAAAGTAAGCGGAGATAG
Protein sequence (LotjaGi2g1v0195600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTKKIFNWKVHRSTSVHSHAACFAPLNPLRFFLHCYFSHRLSQMPTLDSAARMLGELRRAAAVSCGCASSGHVLTVRHF SSAAAAVSSATDSDPARSSSSDSKGKASKWLLFLPGVMTFGLGTWQFFRREEKIKMLEYREKRLQMEPLNFSSAYPSNEE LDSVEFRKVVFKGVFDDKKSIFVGPRSRSISGVTENGYYVITPLMPVHNYPNSVGFPILVNRGWVPRSWKDKFLEDSQDE QFADELPFPSQADGTRSWWRFWARKPVIIEDQAPSVTPIEVVGVVRGSEKPSIFVPPNDPGSSQWFYVDVPGIARACGLP ENTIYVEDINENVNPSNPYPVPKDVNTLIRSSVMPQDHLNYILTWYSLSAAVTFMAFKRLRQKSKRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 109 | 109 | - | – | |
| PANTHER | 84 | 383 | 300 | 2.2E-92 | – | |
| PANTHER | 84 | 383 | 300 | 2.2E-92 | – | |
| ProSiteProfiles | 106 | 384 | 279 | 37.353 | ||
| TMHMM | 110 | 128 | 19 | - | – | |
| Phobius | 110 | 128 | 19 | - | – | |
| Pfam | 114 | 370 | 257 | 5.1E-40 | ||
| CDD | 119 | 375 | 257 | 1.31618E-47 | ||
| Phobius | 129 | 358 | 230 | - | – | |
| TMHMM | 358 | 377 | 20 | - | – | |
| Phobius | 359 | 377 | 19 | - | – | |
| Phobius | 378 | 387 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi2g1v0195600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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