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LotjaGi2g1v0196900.1

Overview

Field Value
Gene ID LotjaGi2g1v0196900
Transcript ID LotjaGi2g1v0196900.1
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description C2 domain-containing protein; TAIR: AT3G17980.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q9LVH4|CAR4_ARATH Protein C2-DOMAIN ABA-RELATED 4; TrEMBL-Plants: tr|I3RZM5|I3RZM5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0196900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:63182202..63185555) extracted from Lotus japonicus Gifu genome v1.2.

AGAAAACAAAAAAACAAAAACACACACACAAACACAATAATTAACATCTCACAATTTGGCATTGCCTCATTCAATTCAAT TCATTGCATTGTTCTTCTTCATCTTCTTGTTAAGGTTTCATCATATCAATTCTCCTCACAGGTTCCCCTGCCCCACAGAG ACAGACATTTTCCTTACTGGTAGACCCTACCACCCTCCCTAATCTCTTACCTTCTGCACACGTTCACCGCCACCTTTTTT GGATTTTCATCATTCAGTGTCACAAGACTCATTCAACACATTTAATGATTTTTTATTACAGGTTATGTTATTATTATAAT CATAATATAAAGAGGGAAGAAAGAAAGAAAGAAATGGAAGATTCAACACCAAAGTCTCTGATGGAGAACCTGCTAGGCCT TCTCAGGGTTCGTGTTAAGCGTGGCGTCAACCTTGCTGTTCGTGATGTTCGTAGCAGTGACCCTTATGTTGTTGTTAAGA TGTACAATCAGGTTCATCTTCATCTTCTCATTCAATTTCTCAACTTCTCAGTTTTTTTTGTACCACTGATCATAAAAATT CATTCTTCTTCTTTTTCTTCATTGATCCACTTTTCTTGCAATTGATTCAAGGACCCTTTTTCTATTTAAACAAAAATTTG CTCTTAATTGTGCAGAAACTCTTGCTTCCATTTTTTTTTTCTTCTATGTAGTTAATGGATGTAAATTGTAAAACCATGAA AACCTATGATGTCTTTGTTTTGATCAGATTTATGGTGTGATAAAATTTTTCATTTTAATCTATGTCTTCACTGATGTTAA ATTGCATGGGGGGTTATGAAATATGATGGGCAAGGCAAGATTCTGATGATTGAAGAATTTGATGCAATATATATTCTAGT AGATCTTGTCTAATTATGCATAATCATAACTTGAGTTTTTTGAATTTGTATTCCAGAAACTTAAGACTCGTGTGATTAAG AAGGATGTTAATCCTGAGTGGAATGAAGACCTTACCCTTTCTGTCATAGATCCTCATCACTCCGTTTTGCTGGTAAGTGA CTGAATTGGTTTGTTTATGTCTTTTCAAGTTGAATTGAATTGAATTGAATTTCATTTTTAATTGGTTTCCCAGGACATCT TAATTACTCATGGTCTCATGATGTCCTTGTCTTTATGGTAGGGAAAAATATTTTTAAGAGAAAAATCTACATAGATGATA GAACACACACATACACCTGAACATTTTTGGACTGTCTGTAATTGAACATCCATATATACCCCACTTCATGAATTGATGTG TTCTGATGCAACAAAGTTTATCATTTCACATGTCCTGCCTTGAAAATTAAACTGCCTTATAGTATGCTAGGATCAACTTC TCTTTACACATAATCAATTCTGACACTCATAAGCTACTCATAGAAGTTTCTCCCTATAATTGGTTTTGACGTTAGAATAA ATTCTAGATGCATTTCCAAAAGAAAACTGATGTTATTCTTGCACCACTAGTAAATGTAGTAACACTGACCATACCCATGC ATTTGTACTTGGATGCCTTATTTACTTGGATATGCAATATGAACTATAGAAAAGTGAACACTTCTTTATATTTGGCAAGT TTCACTGCATCCAGGTCAAATAATGCTCTCTTTTTCTGCTGTATTTGTTTTTAGAGTATTGGTGACGAGTGCCCTAAAGG GAAAACTGGTAATGGACCATTGAAAACACTATTAAATACTATCAATCACTTAAAAGGAAAATATTAAAATTCTTAGTTAC AATTAGTTAGCTAGTAACCTAAGGACCAACAGGTGGTTGGTTCAAGTAGTACATGTTTGATTTTCCTTAAGCAAGGCCTT GGGTTAAAGTCTAGTGAATGGGAAAACCCCTGGGGGAGAGCTAGCTCCACCAAGATGTGGATGTTCTCAGCTCGAACATG ATTGTCTAATGTGGAAGATACCTTTCTTTATACCAAAACATGTTAGTAACCTCAGGTAGTTAGAAAGGTAGGATGTTATA ATTTATGTAATTAATAGGTGCAGCTCTGCTATGTGTGTTCTGTTCTTTAATTTGGGCTATTACACCCTTTTCTATCAAAT AAATGCTTTCTTTTTCGTCAAAGTTTTCGATTTTTGTTTCTTTAGGGCACTTGTTAGCATTCTCCTTTGTATTTATCTGA GATTTTCTGATGTATCATTTTTTGTTCATTCTATTGGACTGCACACTAGTTAATAATCTTTTCCAATTGCAGACTGTGTA TGACCATGACACTTTTAGCAAAGATGACAAAATGGGAGATGCGGAATTTGAAATCTTTCCCTATATAGAAGCCTTGAAGA TGAACGTAACTGGCCTTCCCAACGGCACCGTGATCAAGAGAATACAACCAAGCAAGGAGAATTGCTTGGCGGACGAGAGC TGTATCTATTATAACAGCGGCAAAATTATCCAAGACATGATCCTCAGATTGCGACATGTCGAATGTGGTGAAGTGGAAAT CTCGTTGCACTGGATTGATCTTCCCGGTTCTAAGGGTTTATGATTGATCTTATGGGATGTTTGTTTATTCACAACTACAT CCATATAAGCTGGCTTTCCTCCTTCAACTACCTGGTTTTGTGAAATATGGTTAGGTTATATTATAAGACTTGAGCAACAA ACTGAACTTGTATTTATTCAAGTTTACCTATTTGTATCCAGTTTGTAATGCATTTAGTACAGTTGAGAAAATTGTCTGTT CATGTATAAATCTGTCCTCTGGTTTGTGTTGCTTTCTTTACATGTTGCTGAACACCTGTTTCTTTGTGTATTAGAAAGAC TTAGTAGTTTCTCAGTGTGTTCTAAGATCAGGATCTCTGCATCATTCATTTTACAAATCTTCCAATTTTACAATCTTCCA TTTCAAATTTTACTTTTCTTCCTCTAGCAAGCATGGTTAAAAATTGTCTTGCATCAACTCAGATGGTGTGAGCGCGTGCT TGGATCGGCGTGGTCTAAAATTGATTTTGATAGAGTTCATTTTAATAAAATTGATTGTGATAAACGTGATTTTAAAGTGT ACTGTTTGTACTTATGTTTGAATACCTTAAACAGAAAAGTGAGTTTTGTAGGGTAATGTTATCAAATTCAGTTTGAAAAA TTATGTTCAACAAAAAAGCTATTTTCTCTAGCTTCCTAGCGTGATCGATTTTGAGGCTGAAATAGATTCTTCATAATCAC ACTCAAATATTTATATTGTCATCCATAATTAACTTTGCGCTATCAGAATTGATTCTGGGTTCCCCGGAACTAAACAAGCA CTAAGTTAAGAAAAATTGAAGAAGTACATTCAATCATTGGATTAGGATTTGTATGGTCGAAAGTGATAAATGAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0196900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTTTTTATTACAGGTTATGTTATTATTATAATCATAATATAAAGAGGGAAGAAAGAAAGAAAGAAATGGAAGATTC AACACCAAAGTCTCTGATGGAGAACCTGCTAGGCCTTCTCAGGGTTCGTGTTAAGCGTGGCGTCAACCTTGCTGTTCGTG ATGTTCGTAGCAGTGACCCTTATGTTGTTGTTAAGATGTACAATCAGAAACTTAAGACTCGTGTGATTAAGAAGGATGTT AATCCTGAGTGGAATGAAGACCTTACCCTTTCTGTCATAGATCCTCATCACTCCGTTTTGCTGACTGTGTATGACCATGA CACTTTTAGCAAAGATGACAAAATGGGAGATGCGGAATTTGAAATCTTTCCCTATATAGAAGCCTTGAAGATGAACGTAA CTGGCCTTCCCAACGGCACCGTGATCAAGAGAATACAACCAAGCAAGGAGAATTGCTTGGCGGACGAGAGCTGTATCTAT TATAACAGCGGCAAAATTATCCAAGACATGATCCTCAGATTGCGACATGTCGAATGTGGTGAAGTGGAAATCTCGTTGCA CTGGATTGATCTTCCCGGTTCTAAGGGTTTATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0196900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIFYYRLCYYYNHNIKREERKKEMEDSTPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYVVVKMYNQKLKTRVIKKDV NPEWNEDLTLSVIDPHHSVLLTVYDHDTFSKDDKMGDAEFEIFPYIEALKMNVTGLPNGTVIKRIQPSKENCLADESCIY YNSGKIIQDMILRLRHVECGEVEISLHWIDLPGSKGL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50004
25 119 95 15.34
IPR000008
PANTHER
PTHR45933:SF15
28 197 170 9.5E-107 –
PANTHER
PTHR45933
28 197 170 9.5E-107 –
Gene3D
G3DSA:2.60.40.150
31 195 165 5.4E-27
IPR035892
SUPERFAMILY
SSF49562
34 123 90 2.53E-27 –
CDD
cd04038
37 180 144 2.14671E-75 –
Pfam
PF00168
38 122 85 4.3E-22
IPR000008
SMART
SM00239
39 134 96 8.9E-18
IPR000008

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0196900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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