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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0196900 |
Transcript ID | LotjaGi2g1v0196900.2 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | C2 domain-containing protein; TAIR: AT3G17980.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q9LVH4|CAR4_ARATH Protein C2-DOMAIN ABA-RELATED 4; TrEMBL-Plants: tr|I3RZM5|I3RZM5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0196900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63182202..63185555) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAACAAAAAAACAAAAACACACACACAAACACAATAATTAACATCTCACAATTTGGCATTGCCTCATTCAATTCAAT TCATTGCATTGTTCTTCTTCATCTTCTTGTTAAGGTTTCATCATATCAATTCTCCTCACAGGTTCCCCTGCCCCACAGAG ACAGACATTTTCCTTACTGGTAGACCCTACCACCCTCCCTAATCTCTTACCTTCTGCACACGTTCACCGCCACCTTTTTT GGATTTTCATCATTCAGTGTCACAAGACTCATTCAACACATTTAATGATTTTTTATTACAGGTTATGTTATTATTATAAT CATAATATAAAGAGGGAAGAAAGAAAGAAAGAAATGGAAGATTCAACACCAAAGTCTCTGATGGAGAACCTGCTAGGCCT TCTCAGGGTTCGTGTTAAGCGTGGCGTCAACCTTGCTGTTCGTGATGTTCGTAGCAGTGACCCTTATGTTGTTGTTAAGA TGTACAATCAGGTTCATCTTCATCTTCTCATTCAATTTCTCAACTTCTCAGTTTTTTTTGTACCACTGATCATAAAAATT CATTCTTCTTCTTTTTCTTCATTGATCCACTTTTCTTGCAATTGATTCAAGGACCCTTTTTCTATTTAAACAAAAATTTG CTCTTAATTGTGCAGAAACTCTTGCTTCCATTTTTTTTTTCTTCTATGTAGTTAATGGATGTAAATTGTAAAACCATGAA AACCTATGATGTCTTTGTTTTGATCAGATTTATGGTGTGATAAAATTTTTCATTTTAATCTATGTCTTCACTGATGTTAA ATTGCATGGGGGGTTATGAAATATGATGGGCAAGGCAAGATTCTGATGATTGAAGAATTTGATGCAATATATATTCTAGT AGATCTTGTCTAATTATGCATAATCATAACTTGAGTTTTTTGAATTTGTATTCCAGAAACTTAAGACTCGTGTGATTAAG AAGGATGTTAATCCTGAGTGGAATGAAGACCTTACCCTTTCTGTCATAGATCCTCATCACTCCGTTTTGCTGGTAAGTGA CTGAATTGGTTTGTTTATGTCTTTTCAAGTTGAATTGAATTGAATTGAATTTCATTTTTAATTGGTTTCCCAGGACATCT TAATTACTCATGGTCTCATGATGTCCTTGTCTTTATGGTAGGGAAAAATATTTTTAAGAGAAAAATCTACATAGATGATA GAACACACACATACACCTGAACATTTTTGGACTGTCTGTAATTGAACATCCATATATACCCCACTTCATGAATTGATGTG TTCTGATGCAACAAAGTTTATCATTTCACATGTCCTGCCTTGAAAATTAAACTGCCTTATAGTATGCTAGGATCAACTTC TCTTTACACATAATCAATTCTGACACTCATAAGCTACTCATAGAAGTTTCTCCCTATAATTGGTTTTGACGTTAGAATAA ATTCTAGATGCATTTCCAAAAGAAAACTGATGTTATTCTTGCACCACTAGTAAATGTAGTAACACTGACCATACCCATGC ATTTGTACTTGGATGCCTTATTTACTTGGATATGCAATATGAACTATAGAAAAGTGAACACTTCTTTATATTTGGCAAGT TTCACTGCATCCAGGTCAAATAATGCTCTCTTTTTCTGCTGTATTTGTTTTTAGAGTATTGGTGACGAGTGCCCTAAAGG GAAAACTGGTAATGGACCATTGAAAACACTATTAAATACTATCAATCACTTAAAAGGAAAATATTAAAATTCTTAGTTAC AATTAGTTAGCTAGTAACCTAAGGACCAACAGGTGGTTGGTTCAAGTAGTACATGTTTGATTTTCCTTAAGCAAGGCCTT GGGTTAAAGTCTAGTGAATGGGAAAACCCCTGGGGGAGAGCTAGCTCCACCAAGATGTGGATGTTCTCAGCTCGAACATG ATTGTCTAATGTGGAAGATACCTTTCTTTATACCAAAACATGTTAGTAACCTCAGGTAGTTAGAAAGGTAGGATGTTATA ATTTATGTAATTAATAGGTGCAGCTCTGCTATGTGTGTTCTGTTCTTTAATTTGGGCTATTACACCCTTTTCTATCAAAT AAATGCTTTCTTTTTCGTCAAAGTTTTCGATTTTTGTTTCTTTAGGGCACTTGTTAGCATTCTCCTTTGTATTTATCTGA GATTTTCTGATGTATCATTTTTTGTTCATTCTATTGGACTGCACACTAGTTAATAATCTTTTCCAATTGCAGACTGTGTA TGACCATGACACTTTTAGCAAAGATGACAAAATGGGAGATGCGGAATTTGAAATCTTTCCCTATATAGAAGCCTTGAAGA TGAACGTAACTGGCCTTCCCAACGGCACCGTGATCAAGAGAATACAACCAAGCAAGGAGAATTGCTTGGCGGACGAGAGC TGTATCTATTATAACAGCGGCAAAATTATCCAAGACATGATCCTCAGATTGCGACATGTCGAATGTGGTGAAGTGGAAAT CTCGTTGCACTGGATTGATCTTCCCGGTTCTAAGGGTTTATGATTGATCTTATGGGATGTTTGTTTATTCACAACTACAT CCATATAAGCTGGCTTTCCTCCTTCAACTACCTGGTTTTGTGAAATATGGTTAGGTTATATTATAAGACTTGAGCAACAA ACTGAACTTGTATTTATTCAAGTTTACCTATTTGTATCCAGTTTGTAATGCATTTAGTACAGTTGAGAAAATTGTCTGTT CATGTATAAATCTGTCCTCTGGTTTGTGTTGCTTTCTTTACATGTTGCTGAACACCTGTTTCTTTGTGTATTAGAAAGAC TTAGTAGTTTCTCAGTGTGTTCTAAGATCAGGATCTCTGCATCATTCATTTTACAAATCTTCCAATTTTACAATCTTCCA TTTCAAATTTTACTTTTCTTCCTCTAGCAAGCATGGTTAAAAATTGTCTTGCATCAACTCAGATGGTGTGAGCGCGTGCT TGGATCGGCGTGGTCTAAAATTGATTTTGATAGAGTTCATTTTAATAAAATTGATTGTGATAAACGTGATTTTAAAGTGT ACTGTTTGTACTTATGTTTGAATACCTTAAACAGAAAAGTGAGTTTTGTAGGGTAATGTTATCAAATTCAGTTTGAAAAA TTATGTTCAACAAAAAAGCTATTTTCTCTAGCTTCCTAGCGTGATCGATTTTGAGGCTGAAATAGATTCTTCATAATCAC ACTCAAATATTTATATTGTCATCCATAATTAACTTTGCGCTATCAGAATTGATTCTGGGTTCCCCGGAACTAAACAAGCA CTAAGTTAAGAAAAATTGAAGAAGTACATTCAATCATTGGATTAGGATTTGTATGGTCGAAAGTGATAAATGAG
CDS sequence (LotjaGi2g1v0196900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATTCAACACCAAAGTCTCTGATGGAGAACCTGCTAGGCCTTCTCAGGGTTCGTGTTAAGCGTGGCGTCAACCT TGCTGTTCGTGATGTTCGTAGCAGTGACCCTTATGTTGTTGTTAAGATGTACAATCAGAAACTTAAGACTCGTGTGATTA AGAAGGATGTTAATCCTGAGTGGAATGAAGACCTTACCCTTTCTGTCATAGATCCTCATCACTCCGTTTTGCTGACTGTG TATGACCATGACACTTTTAGCAAAGATGACAAAATGGGAGATGCGGAATTTGAAATCTTTCCCTATATAGAAGCCTTGAA GATGAACGTAACTGGCCTTCCCAACGGCACCGTGATCAAGAGAATACAACCAAGCAAGGAGAATTGCTTGGCGGACGAGA GCTGTATCTATTATAACAGCGGCAAAATTATCCAAGACATGATCCTCAGATTGCGACATGTCGAATGTGGTGAAGTGGAA ATCTCGTTGCACTGGATTGATCTTCCCGGTTCTAAGGGTTTATGA
Protein sequence (LotjaGi2g1v0196900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDSTPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYVVVKMYNQKLKTRVIKKDVNPEWNEDLTLSVIDPHHSVLLTV YDHDTFSKDDKMGDAEFEIFPYIEALKMNVTGLPNGTVIKRIQPSKENCLADESCIYYNSGKIIQDMILRLRHVECGEVE ISLHWIDLPGSKGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 2 | 96 | 95 | 15.34 | ||
PANTHER | 6 | 174 | 169 | 8.0E-107 | – | |
PANTHER | 6 | 174 | 169 | 8.0E-107 | – | |
SUPERFAMILY | 11 | 100 | 90 | 1.64E-27 | – | |
Gene3D | 11 | 172 | 162 | 4.2E-27 | ||
CDD | 14 | 157 | 144 | 4.7438E-74 | – | |
Pfam | 15 | 99 | 85 | 3.2E-22 | ||
SMART | 16 | 111 | 96 | 8.9E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0196900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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