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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0200800 |
| Transcript ID | LotjaGi2g1v0200800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mediator of RNA polymerase II transcription subunit 25; TAIR: AT1G25540.1 phytochrome and flowering time regulatory protein (PFT1); Swiss-Prot: sp|Q7XYY2|MED25_ARATH Mediator of RNA polymerase II transcription subunit 25; TrEMBL-Plants: tr|A0A151RZ52|A0A151RZ52_CAJCA Mediator of RNA polymerase II transcription subunit 25; Found in the gene: LotjaGi2g1v0200800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:63837933..63844245) extracted from Lotus japonicus Gifu genome v1.2.
CAACACCCCCACGTTCCTGAGCCTTGCCATTCCTTCAGCTGCTATGGATTGTAATTTCGTTCTAACACACATCAATACAA CCTAAAATAGACCAATATTTACTGTATTGTTAGTTGCTACTTTTCTTAACAATACTCATTCTTTTCTCTCTGAGATCCTA ATGCTGTATTGCCGTTTTCAATTTTTATTATGGTGAACAGCTTGGAAATGTGGTCGTTTGAAATGATGATTCTCCTTTCC GGTCTTTTTCCAAATCCAAAGTTGGAAACATCAGTGCTTTCTATCTGGTTGGTTTAATATTTGGATGCTTTTCACATTTT TTCATATTTTGATCTACATATTGTCGGTGACCTGTGAGCTTTTGTCAGCTTGAGTACAACATCAATTGCTTGGATGATTC CCTTCGGACTCAGTGGAGCTATAAGGTAAGGATTTCCCTGAGCTTACACCTATCAGACATTGAGTTTCTTTCTAATTTCA TTTTTGCAATTTCCATCTAGATTTGGTGTACGAAGTCCCATTAATGCTTTGTATGATATTCTTGCAGCACTCGAGTCTCA AATGAACTTGGAGCTGGTCATCCACGTGCAGCACAATTAAAAGTGTGTGTTGTCATAGTGATTGGCATTATCGAGAGTAT CTTAGTTGGAATTCTGATGATACGAATATGCAATATCTGGGGCTATGCATATAGCAATACAGAAGAAATGGCCAAATATG TCGCAACTTTGATGCCAATTCTTGCTGTATCTAACTTTCTATACGTATTCCAATGCGTTCTTTCAGGTTTTTCCCTATTT CCTCTTTTAATTTTCATTTATTGTCTATATTGGAGTGGAGCTATGACTTAAAAGCACTATGACTCAAAATTGTTCGTCAT TTATCGTAGTATATGATTTTGTCTGATTAGGTTTGTGAAATCCAAAAATTCACATGTATTTTGTCTGATTTTCTCTTCAA TGAAGTTTTTTTAAAAAACAATGTTTTTCATATCATAGATTGAGAAGGGAAGTGAATTGAGTTAATTTGAAGTGGAGTTG CTGATGATGAGAGTATAATTGGCATGAGCTGCGACAATATTTTGCGCACCAAGTTCTTTTTGAGACATGGGTTGTTGTTG CAATGAAGAATGTGCCGAAATGCTAATCTGAGCCTCTCTATCTTCATCTTAGGTTATTGTTCTTTTGTGAAATTTTGGCT TAAAGGACAATACTCGGTCTTCTCCTTAGGATCTAATATATCTCTGTTTGCATATAACCTCTCTGTTACCATTTGATAGA TGCTAAGAGGGCTGGATGAAGTTCTTAAAAGGAGTGTGGATTGGTAGAAATCGTGAAAATTATGTATTGTTACATTAATT TTCTGATTATTTCAAAAAAAAATTTAAGTAAGTAATATTTCTGTTCTCTGTATCAATTTGTAGCTAGTTAATTTTTTCAC CCAAAAAATGTTCAATTGCTTGTTTACCAGGTGGCTTGATTTTTGTTTTCTAGTCACCATTTATCAAACACTAAGTAGCT AAAATGTAAAAGAAGGCTTTCCTATTTAAGGAATGAACAAGACAGGCAGAGGAAGTGGAAAGTATGTGTATGAAAATAAA GTAACACAGATATAAGTATGTGTTCATTCAAACAATTGTGAGATTTGATTTGATTTTCTGAGTTTGTCATAATGCATATT ACATAAATATGTGAATGTGAATAACATATATAGTGACAAATAAAACTTGAGCAGGGCTAGCTTGTTAATAGTCATTTTTC TATAGGGCCGACATTTCATTCTTGCACTCAGCACAAGCATGAACTAGATGACATATTTTTTTTTTTTTTAACTTACTAGT GATTCAGAGAGAAAAGGATATCGTAGAAAGAAAGACTTACCGTGGAGTTCACTTAAATACTGCAAGCTCTATGGTGTGTG ATAGCTATTCCACTGGTACCATTTAAAAAAACGAAGCTATTATAACATTACAAGTGATATTATTTCTTTGCTATGTCAAC CTTAATTCAGGAACTGCAAGAGGATGCGGTTGGCAAAATATTGGTGCATTTGTGAATCTAGGGACATACTATTTAGTCAG AAATCCATCAGCTATTGTGGTAGCTTTTGTATTTCATGTTGGAGACAAGGTAAAAAAATGGTTCATTCTTTTGTAGCATA GTTGGCCTGTTAAATAGGGGCTGTGACTGGGGATAATTTGTGCACTCATTGTTCAAGTATTTTCCCTAATGATCATTACT ATGCGTATTGATTGGGAGAAGGAGATGAAGCTTTCAAAATTTTTTTTCTTTGTAATCTCCTTCATCTTTCATTTTTGTGA TGCAGGTTCTGACATGTTTTATATTTCGGACACCACATTCAGGCAAATAAGGCCACAGATAGAGTCTATGGCGCAATAAC ACCAGAGAACATAGTGTCATGAAGCTGCAATATCTCTGCACATACACATCAATTTACCTTATTATAAAAGATATATCTAT CCTTGCCACATGTTTCTCATGATTTTTGCCCCCGCCTAAATGCATCTAAACAGTTAGTTTTGCACATGTCATTTCTCTCT CTCAACTCCTACTTTTGTTCCTTTCCCACTTACTTCTTACCTCTTCAATTTTTTAATTCATTCAAAATAATTTCCTTTCT TACTGGAAAAATTTCCTGCTCAAGTTCACCCCCCCCTCGCCCCCTTTTTGTTTCTCAGCCAAGCTGATAAACCCTCATCC ATTTCTTCTCCCCCCTTCCTCACTTCCTTCTTTCTCTCGGCGTTTTAACCCCCAACAGGTAATCTTTTCTTAACTCAGAC TCTTTTATCCATCATCACAATTCTCTCGTTATACTCTTCTTTCTCCTACTTCAATAGCTCCCTCTCTCTTTGTGATTTCT TTACGGTAGCACACTTATTCTGAGATTGCCCTTTCTCCTCTTTCACTCCCTTGTATTAATGAATTGTTGTTTGTTGAATG AACAGGTTGTGAGTGACTTTACCCTTCCCTCTGGTTCTGACAAGATTTGTACTGCCAGTACGGACGACACTATAAGGTTT GGGACCACCACACTCGGAAGAATGTTGGTATTTGTTTTTCATTTCGTAGATTAGTGGAAATTTTTGTTTTAATTTTAAAC ACCCAGAAATTGGGATGTTAAGGTACATGTTTGACATAATAATATAAAATTATTCACATGACCCTTACCCAACAGCTTGA GCAAAATTAGCCACGGTAGAAAAAATTCAAAAACACCATACACTTCCTGTGGTGGCCACTCCACTGGCCAGGCCACCGTC ATCATCACCACCGCACCAAATACCATAACACATATCCAAAGTGATTCGAGGATGATTCACTCTAAATGGTAACCCCTTTC AAATTCAACGCACCTCCTTCAACTTTCCATCTATGCAATCAATATAAATCATCCCTCAATTTCCCATCTATAAATAACGC TTCTTCATATAATAACACCACGATATCTTTACTCACAACAAAACCCTAAAAATCCCTGTCTTCCCTTTTGTACTATCGCG TTTTCTTCTACCAATCACCATGGCAGAGAAACAGCTCGTCGTGGCCGTCGAATGCACCGCTGCTATGGGCCCCTATTGGG ACACCATTCTCAGGGATTACCTCCATAAGATCATCAGGTCTTTTGGTGGAAACGAGTCAACTGGTCAGAATCCTTCTGCT TCCAACGTTAAGTTTGCTCTAGTCACCTATAATACTCATGGATGTTTTTCTGGTTGCCTTGTGCAACGGTCTGGCTGGAC AAGAGACCCAGATGTTTTCTTCTTGTGGCTTTCAGCTGTACCCTTTACTGGTGGTGGTTTTAATGATGCTGCAATTGCCG AAGGGCTTGCTGAAGCTCTGATGATGTTCCCAAATTCTCAAAGTGGAGGCCCGAATCAGCAGAATGTGCATATGCATAAG CACTGTATCCTTGTAGCCGCAAGCAATCCTTATCCATTGAAGACACCAGTTTATATTCCGCGACCACAGAACCTAGAGAC GATTGAAACCATTGATTCAGATCCAGGGAACCGTTTATATGATGCTAAAGCTGTTGCAAAAGCATTTCCTCAGTTTTCTA TTTCTCTGTCAGTCATCTGCCCTAGACAACTTCCCAAAGTTAAAGCCATCTACAATGCCGGAAAACGAACTAGTGGAGCA GCTGATCCACCTGTTGATGTTAAAACCCCTCATTTCCTTGTTTTAATATCAGAAGCTTTCAGAGAAGCCTCCAGTGCTTT GAGTCGTTCTGGGATCACAATCTTGCCTACAAATCAAAATCCTGCTAAAGTAGATGCAGTTTCTCTCACACCAGGTACAG GAACACCCCCAACTTCTTTGGCATCAGTTAATGTATCAACTGCACACTGGCGACCAATATCTGCTGGGAATTTGGCTCCT GCAACTGTAAAAGTGGAGCCAGTTCCCGTAGCTTCCATGGTAGCTGGACCTGCTTTTCCCCATAATTCATCAGTTCCTCG TGCTGCTAGTACTGGTCAAGGTGTTCCAAGTTTGCAGACATACTCTTCATCTTCTGCTTCTCAAGGTATCATGACAAGTA CTGAAAATGGTCAGTATACAAAGCCTATGTCGTCAATGTTGCAGCAGCCCTTAGGTCCAGTGAATCCTGCAAAAGTGAAT GTGATCAATTGGAATAATCTCTCTCAAGCACCTCAGGTGATGAACTCTGCTGCCTTAAGTGGTGGAACCTCTATGGGACT TCCCACAATGGGTCAGACTCCTGTTGCCATGCACATGTCAAACATGATATCAAGTGCAATGGCATCTTCTGTACCTGCGG CTCAAAATTCATTTTCATGTGGACCGTCAGGAATGATATCAATAACCAGTTCTGGACCTCTCACCGTTCCTGCTCAGGTT GGACAAAACTCAGCTCTTGGTTCATTAACTTTAGCTACTTTTAATTTGTCTTCAAGTTCAAATCTTGGGATTCCAGAACA CTTAAGTAACCTTCAAAGAGCTATTAGTATGGGACAACAGGCCCCTGGAATGAACCAAGGGAACATTTCAGGAGTCCAAA TGGTGCAAGGTGGAGTTACCATGAACCAAAATGTAATGAATGGCGTTGGTCCATCAGTTGTCTCTTCTGGAAATGGTACG ATGATTCCTACTCCAGGAATGTCCCAACAAGTACAATCAGGTGTACAACCACTTGTGTATAATGCAGCACCTAATATGAC TTTGCCACAGCAGACATCAGGTGGTATGCAGCCTACACATTCCCAATATATCAAGGTCTGGGAGGGAAGCTTATCTGCGC AAAAACAAGGACAGCCGGTATTCATCACCAAACTGGAAGGTTACAGGAGTGCTTCTTCCCCTGAGTCAATTGCAGCAAAC TGGCCCCCTGTAATGCAAATGTTTCGGCTTATACCTCAGGACCACATGAATGACGAGAGATTTGTAGGACAGGCAGATTT CCTTGTTTTCCGGGTAATGAACCCTCATAGGTTTCTTGTTCAGCTGCAGGAAAAGAAGCTGTGTGTAGTTATTCCATTAC CATCACAGACATTGCTACTATCTTTTTCCGACAAAGCCTCCCGCTTGATTGGGATGCTTTTACCAGGGGTATTAGATATG GCTGCATTTAAGCCACAACTGTCCAGTCAACAGAAGCAACAAATGCAACAGCCACAGCAGATGCAGTCACAACAGCAGCA GCTTCCTCACTTGCAACAACAGCAGCAGCAACAGCTTCCTCACTTGCAGCAGCAGCAGCAGCAGCACCTTATCCAGATCC AACAACAACAGCTGCAGCTACCTCCACAAGTCCAACAGCAACAACTTTCCCAGCAGCAACTCCCTCAACTTCAACAACAA CTCTCGCAGCTGCAGCCGCAGCAACAACTTCCGCAGTTGCAGCAACTACAGCATCAACAACTTACTCAGCAGCAACAGAT GGTTGGGGCAGGAATGGGTCAATCCTATGTTCAAGGTCCTGGACGCTCACAAATGGTTTCTCAGGGACAGGTATCACAAG GAGCAACAAACATTGGTGGATGGGGTTTCATGAGTTAGCTCAAATTTTTATATGGATTCCTGACAACTGACGCAAGTTAT ATTTATATTTTCGTTGATAGGTCAAAATCACATATTAATGTTGTATGACCATATAATTTCTTGTTTTGTTTCTGATTCTC GGTGAGCTTGGATTCGGTATTTGTTTAGCTCTTTGTTAATGCTATTGCGGGTTTCTCTGCTGGGTAGGGTCTTTGTTCTT TGTGGTTTTTGTTGTTGCTTGATGAGATCCAGTTTTGGTTGAACCCGTCGCCGCATTTGGTACCTAAATGGAG
CDS sequence (LotjaGi2g1v0200800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGAAACAGCTCGTCGTGGCCGTCGAATGCACCGCTGCTATGGGCCCCTATTGGGACACCATTCTCAGGGATTA CCTCCATAAGATCATCAGGTCTTTTGGTGGAAACGAGTCAACTGGTCAGAATCCTTCTGCTTCCAACGTTAAGTTTGCTC TAGTCACCTATAATACTCATGGATGTTTTTCTGGTTGCCTTGTGCAACGGTCTGGCTGGACAAGAGACCCAGATGTTTTC TTCTTGTGGCTTTCAGCTGTACCCTTTACTGGTGGTGGTTTTAATGATGCTGCAATTGCCGAAGGGCTTGCTGAAGCTCT GATGATGTTCCCAAATTCTCAAAGTGGAGGCCCGAATCAGCAGAATGTGCATATGCATAAGCACTGTATCCTTGTAGCCG CAAGCAATCCTTATCCATTGAAGACACCAGTTTATATTCCGCGACCACAGAACCTAGAGACGATTGAAACCATTGATTCA GATCCAGGGAACCGTTTATATGATGCTAAAGCTGTTGCAAAAGCATTTCCTCAGTTTTCTATTTCTCTGTCAGTCATCTG CCCTAGACAACTTCCCAAAGTTAAAGCCATCTACAATGCCGGAAAACGAACTAGTGGAGCAGCTGATCCACCTGTTGATG TTAAAACCCCTCATTTCCTTGTTTTAATATCAGAAGCTTTCAGAGAAGCCTCCAGTGCTTTGAGTCGTTCTGGGATCACA ATCTTGCCTACAAATCAAAATCCTGCTAAAGTAGATGCAGTTTCTCTCACACCAGGTACAGGAACACCCCCAACTTCTTT GGCATCAGTTAATGTATCAACTGCACACTGGCGACCAATATCTGCTGGGAATTTGGCTCCTGCAACTGTAAAAGTGGAGC CAGTTCCCGTAGCTTCCATGGTAGCTGGACCTGCTTTTCCCCATAATTCATCAGTTCCTCGTGCTGCTAGTACTGGTCAA GGTGTTCCAAGTTTGCAGACATACTCTTCATCTTCTGCTTCTCAAGGTATCATGACAAGTACTGAAAATGGTCAGTATAC AAAGCCTATGTCGTCAATGTTGCAGCAGCCCTTAGGTCCAGTGAATCCTGCAAAAGTGAATGTGATCAATTGGAATAATC TCTCTCAAGCACCTCAGGTGATGAACTCTGCTGCCTTAAGTGGTGGAACCTCTATGGGACTTCCCACAATGGGTCAGACT CCTGTTGCCATGCACATGTCAAACATGATATCAAGTGCAATGGCATCTTCTGTACCTGCGGCTCAAAATTCATTTTCATG TGGACCGTCAGGAATGATATCAATAACCAGTTCTGGACCTCTCACCGTTCCTGCTCAGGTTGGACAAAACTCAGCTCTTG GTTCATTAACTTTAGCTACTTTTAATTTGTCTTCAAGTTCAAATCTTGGGATTCCAGAACACTTAAGTAACCTTCAAAGA GCTATTAGTATGGGACAACAGGCCCCTGGAATGAACCAAGGGAACATTTCAGGAGTCCAAATGGTGCAAGGTGGAGTTAC CATGAACCAAAATGTAATGAATGGCGTTGGTCCATCAGTTGTCTCTTCTGGAAATGGTACGATGATTCCTACTCCAGGAA TGTCCCAACAAGTACAATCAGGTGTACAACCACTTGTGTATAATGCAGCACCTAATATGACTTTGCCACAGCAGACATCA GGTGGTATGCAGCCTACACATTCCCAATATATCAAGGTCTGGGAGGGAAGCTTATCTGCGCAAAAACAAGGACAGCCGGT ATTCATCACCAAACTGGAAGGTTACAGGAGTGCTTCTTCCCCTGAGTCAATTGCAGCAAACTGGCCCCCTGTAATGCAAA TGTTTCGGCTTATACCTCAGGACCACATGAATGACGAGAGATTTGTAGGACAGGCAGATTTCCTTGTTTTCCGGGTAATG AACCCTCATAGGTTTCTTGTTCAGCTGCAGGAAAAGAAGCTGTGTGTAGTTATTCCATTACCATCACAGACATTGCTACT ATCTTTTTCCGACAAAGCCTCCCGCTTGATTGGGATGCTTTTACCAGGGGTATTAGATATGGCTGCATTTAAGCCACAAC TGTCCAGTCAACAGAAGCAACAAATGCAACAGCCACAGCAGATGCAGTCACAACAGCAGCAGCTTCCTCACTTGCAACAA CAGCAGCAGCAACAGCTTCCTCACTTGCAGCAGCAGCAGCAGCAGCACCTTATCCAGATCCAACAACAACAGCTGCAGCT ACCTCCACAAGTCCAACAGCAACAACTTTCCCAGCAGCAACTCCCTCAACTTCAACAACAACTCTCGCAGCTGCAGCCGC AGCAACAACTTCCGCAGTTGCAGCAACTACAGCATCAACAACTTACTCAGCAGCAACAGATGGTTGGGGCAGGAATGGGT CAATCCTATGTTCAAGGTCCTGGACGCTCACAAATGGTTTCTCAGGGACAGGTATCACAAGGAGCAACAAACATTGGTGG ATGGGGTTTCATGAGTTAG
Protein sequence (LotjaGi2g1v0200800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEKQLVVAVECTAAMGPYWDTILRDYLHKIIRSFGGNESTGQNPSASNVKFALVTYNTHGCFSGCLVQRSGWTRDPDVF FLWLSAVPFTGGGFNDAAIAEGLAEALMMFPNSQSGGPNQQNVHMHKHCILVAASNPYPLKTPVYIPRPQNLETIETIDS DPGNRLYDAKAVAKAFPQFSISLSVICPRQLPKVKAIYNAGKRTSGAADPPVDVKTPHFLVLISEAFREASSALSRSGIT ILPTNQNPAKVDAVSLTPGTGTPPTSLASVNVSTAHWRPISAGNLAPATVKVEPVPVASMVAGPAFPHNSSVPRAASTGQ GVPSLQTYSSSSASQGIMTSTENGQYTKPMSSMLQQPLGPVNPAKVNVINWNNLSQAPQVMNSAALSGGTSMGLPTMGQT PVAMHMSNMISSAMASSVPAAQNSFSCGPSGMISITSSGPLTVPAQVGQNSALGSLTLATFNLSSSSNLGIPEHLSNLQR AISMGQQAPGMNQGNISGVQMVQGGVTMNQNVMNGVGPSVVSSGNGTMIPTPGMSQQVQSGVQPLVYNAAPNMTLPQQTS GGMQPTHSQYIKVWEGSLSAQKQGQPVFITKLEGYRSASSPESIAANWPPVMQMFRLIPQDHMNDERFVGQADFLVFRVM NPHRFLVQLQEKKLCVVIPLPSQTLLLSFSDKASRLIGMLLPGVLDMAAFKPQLSSQQKQQMQQPQQMQSQQQQLPHLQQ QQQQQLPHLQQQQQQHLIQIQQQQLQLPPQVQQQQLSQQQLPQLQQQLSQLQPQQQLPQLQQLQHQQLTQQQQMVGAGMG QSYVQGPGRSQMVSQGQVSQGATNIGGWGFMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 744 | 744 | 4.8E-244 | – | |
| PANTHER | 1 | 744 | 744 | 4.8E-244 | – | |
| Pfam | 3 | 225 | 223 | 1.1E-45 | ||
| SUPERFAMILY | 5 | 138 | 134 | 7.78E-6 | ||
| MobiDBLite | 311 | 346 | 36 | - | – | |
| MobiDBLite | 696 | 726 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0200800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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