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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0206500 |
| Transcript ID | LotjaGi2g1v0206500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein,; TAIR: AT3G18400.1 NAC domain containing protein 58; Swiss-Prot: sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2; TrEMBL-Plants: tr|I3SPJ4|I3SPJ4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0206500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:65010169..65014441) extracted from Lotus japonicus Gifu genome v1.2.
GTTAGATGTATGTATTTAACAAAGATATGAAGGAAGCTTCTTGTTGAAGGGTGAGCTATAAATTCATAAAGTGGAGAGGC CTTTAAGAGGATCATCTTGGTGATGTTATTGAGCTTACTTTTGAACACCACTCATCTTCATCATATATATATTTGTGGTG CACCCTCTTAAATTTTTGGTAAACTTCTTCAAGGGATCATATTCAGAAGGCTGCATAGGAAATGGAGGAAAATCTACCTC CTGGATTCAGGTTCCATCCTACAGATGAAGAGCTCATCACATATTATCTTACAAGTAAAGTTTCTGACACTAACTTCACA TCCAAAGCTGTGGCAGTTGTTGATCTCAACAAGTCTGAACCTTGGGACCTCCCAGGTAGTTAATTCTTAGAGTTTCTTAA TTTCAACATGACCTTTTATCATATAAGCATATATCTTCCTATGATCATGTTTCTCTCTTATAAAACTACCTTTGTTTTGT TCTCAAGTTTGATTTTTATTGATTTTTACAAAGGCTTTTTGTTCCTTGACACAACCTATTTGACATTGATCCTTTCAGGA ATTACTGCAAAAAAATATAATATATATATTAAAGCTGATTAATTGTCAAATTGAAGGAAAAATACATAGGGATACTTTTC CTAAGGGGCTGAAATCTTCTAGTGTCTTCAAAATTTTCATGTCCTACCAATTAAATTTACGAGATGTATAATCTTATAAT TGTCATATTTATATGACACAATTTGTTTCATCATGAGACGGGAAATGGGACACCGAATTTCATGCTTTCTCTAACATCCT TTAGCCCTAAGAATTTTTCAGTTTATTTATTTATTTATTAAATTTCAGAAGCTTAAGTTCCTTAGCTGATGAGGAATGTA CAGAAAACTTAATTTATTCATTCTGAAGTCCGCAATTTGATCATTTACAGCTTTTTCAGTTCTAACAACCAAGCAAATCA ACGAAGTCTTTTGTTATTTTGCTTATTCGTCTTCACACTATATATTTAATAGTTTGACCAAATCTAGTTTTGCAATGTGG TGGTTGTTTATAAATCCATGCATCTATTAAATACAATATCCCAGTGCTGTGCTTTCCTAGTTTAAAAATGAATAAAATGG AAATGCACATAGCATTTCAACTCTCTATTAATCTTTTATGGTGTAATTGAAATTTTGAATAGTGACAGTAGTTGACAAAT TTAATGGTATTACTGTTGCCTAGTCTTTTATGAACAGGGAAATTAGATAAATTAATAAAGGGTCATTAATTAGTTGTTTC TGTGTGGTAATTAATTTACAGGTAAGGCTTCAATGGGGGAGAAGGAATGGTATTTCTTCAGCTTGAGAGACAGGAAATAT CCAACAGGGCTTAGAACTAACCGAGCCACTGAATCAGGGTACTGGAAAACTACAGGGAAAGACAAGGAAATTTTTCGAGC TGGGGTTTTGGTGGGAATGAAGAAAACCCTAGTTTTCTATAAGGGTAGGGCTCCAAGGGGTGAGAAAAGCAATTGGGTCA TGCATGAGTACAGGCTGGAAAACAAGCATCACTTCAGAACTTCAAAGGTTAGTATAATTAAATGCATCACAATTGACTCA AACTTTCCTATATAATTACATGAAATTTGATCATATGAAAAGAAAAGAAAAAACTCGTGGAAGAATATAGATGTTTCCAA CTCTAATATGATGGATTCCAATGAAGAATACAACATTCGGTTGCACATTTTGAATTCATTTATTTGTTATCAAAAGCTTA ATTGGGTTAAAAGTGGTTCTTAGGTTTGCACAAAATCTTTTCGGGCTATATTTAGCTCAGCTCATTAATAGATATTATCC TAAGAATTTAATAAAGATTGGCAGATTATTTTTTGGTTTAGAAACCAAAATATATTTGAAGTGAAAAGAGAAAAATAATA AATGTGATGTGACAGAATAGAAGAGATGAGGAGAAAAAAAGATGTATATGAATGTTGTTGCTATTTTGTGATACACATAT TTCGAATCTTAAAAATTATCCTTAATTTATAAAGATATGTCAATATGATTAATCAGCTTAGTTACACTTTTGTGTATTTA ATTTCTATAATGATACTTGAACATACAAAAAATGTAGACATGCAACCGACACTTATTTTTATCGCTAGCCAGTGTTGTCA ATCTCTAGAGATATCTCTTAATTTCTTACGAGATTACGATATCACGTACCAAAAACGAGACTAACGGGGGGTAATAACTG TTTTTTCAAATCTCAGCTGATATCTCGAGATATCTCTTAATCTCTTGTAATATCGCGAGATTACCGCGATATTACAAGAG ATTACGAGATTAGCTTGTTTTGTCAAAAATATCAAAAATTGTTATGTCCAGGGCTATTTCAGTCATTTAACCCACAAATT TTAGGGTCTTCACTCCTCTCTGCCGTTATTTCCACTAAACTTTGTCGTTCTTTCCACTTCAATCTGATGATGAATGGATA ACTTAAGAGGTAGATCTAGAGGAGAATGAGATTGATAGTGATGATGATATTGTGGATGTCATTGAACTAGTTCTAGACAA CAGTGAGAATTTGGTCCTTGATCTTAATGTTGGAGGGTCTATGTCTATCTCATATGAGAAATAACTTGATGGTGATGATG GAGATGATGATTCTAGTGGTTCTAAATTCGATGGTGTTGTAGGATTTTAAATTTGGATGACTATTGACTTATTTGTTTAA GTTTATCCTAACTTGCATTGATATTTTGTTAACTTGTTATGACTTATGTACCTTAGATTTGGATATTTGGTAATTTTATG CTTGATTTTAATTTTCATTGTTAGATAATTTGGATAATTTTTAGTAGTATTAGTGTGACTTAATCATTATTATAGTTTAA AAATATCATTTTTGCACGAGGTAATCTCTTACGAGACTACGTTACGAGATTACGTTACGAGATTACCTTCTCTCCACGAG ATTAGGTAATCTCAGATTGACAACCATGTCGCTAGTCTTATCTTCTTACATATATTAATTATTTCTCTCTTCTCTAATTT TCCTACTTTAAGGTGTTTATTGGATGTTTACACTATTTAGATGTCTACAAATAAGTTTACACTATTTTGTACAAGAATGT CAATATGTAATTAAGTTCATCACCATGCTTTGGTTTCATTGGTGAGAATAATCACATTCTGTAATCTTTACTTTTATAGG ACGAATGGGTTGTTTGTAGGGTTTTTCAGAAGACCACAGCAGCCAAAAAACTACAACAAACTTCATCTTCCCAACCAGAA TCCCCATGTGACACAACCTCAATGGTCAATGAATTTGGTGATGTTGAGCTGCCAAATCTAAACAACATTGCAAGTTCATC TGGTCATGGACTCACTAACATTAATTCAGCACAAACTTTCAACTATGATCTCATGAGTAACAATAATGTTAACACAAACA TGAACTTGACCATGAACTGGCCACCTGCAACTGGTGTTTCCTCACTTCCATGGCCTTCTGGGTTGCTGAATCCAAACATT AATTCTGTAAATTCTTTGCTTCTCAAGGCCTTGCAATTTAGAAGTTATAATCAGCAAAAAGAAGCTGCAGCTGCAGAACA TTTTGCAACATCATACATGATGCCTCAAGGAGTTTCCCACCACCTTGGAACTGACCTGAGCTCAAATAATCTCAGTGCTT CTTCTTCAAGAGTTTTAGAGTGTATGCCACAGCAGCAACATCAGCAGGAGCAACCATTCAATTCGGACTCCATTTGGTGA AGTTGTTGATTAAAGCATGAAGCTAACATTGTGTAAATTAATCCCAAAACCCTCCAACAGAACCTATAGATAAAGTAAAT ATTGGGATTTTGGGACTTTGTTAATTAAGTTGTTATTTTCATTTTCTTACATGCAAAATAAACTCAACCGTTGATGTTGT AAACATAGCTCGTCAATTGTTGTAATTAGGTGTCCTTTCTTTGCCAATCTTAATTAAGGAGGAAAATCTCTAGTTCGTTC TTCCTGTCAAAAAAAAGAGAGTTACAAGTGTTTTATACAAAGGTAAAGTAACTAACTAATGAACCTCTAACTAGCAAATG AATGTGTATATGAGCTAATATCCCCTCAAGTTGGATGGTATATATCTAAAATTCCCAACTTGTGAAACAATATGCTAGCT GATGTTTGCTTTGTACAAGAACAAGCTTGATTTTTCCACTTTGAACCAATTCTCGGATATAGCAACAATCCACATGTATG TGTTTTGATCTTTCATGATGAGCTGGGTTAGAA
CDS sequence (LotjaGi2g1v0206500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAAATCTACCTCCTGGATTCAGGTTCCATCCTACAGATGAAGAGCTCATCACATATTATCTTACAAGTAAAGT TTCTGACACTAACTTCACATCCAAAGCTGTGGCAGTTGTTGATCTCAACAAGTCTGAACCTTGGGACCTCCCAGGTAAGG CTTCAATGGGGGAGAAGGAATGGTATTTCTTCAGCTTGAGAGACAGGAAATATCCAACAGGGCTTAGAACTAACCGAGCC ACTGAATCAGGGTACTGGAAAACTACAGGGAAAGACAAGGAAATTTTTCGAGCTGGGGTTTTGGTGGGAATGAAGAAAAC CCTAGTTTTCTATAAGGGTAGGGCTCCAAGGGGTGAGAAAAGCAATTGGGTCATGCATGAGTACAGGCTGGAAAACAAGC ATCACTTCAGAACTTCAAAGGACGAATGGGTTGTTTGTAGGGTTTTTCAGAAGACCACAGCAGCCAAAAAACTACAACAA ACTTCATCTTCCCAACCAGAATCCCCATGTGACACAACCTCAATGGTCAATGAATTTGGTGATGTTGAGCTGCCAAATCT AAACAACATTGCAAGTTCATCTGGTCATGGACTCACTAACATTAATTCAGCACAAACTTTCAACTATGATCTCATGAGTA ACAATAATGTTAACACAAACATGAACTTGACCATGAACTGGCCACCTGCAACTGGTGTTTCCTCACTTCCATGGCCTTCT GGGTTGCTGAATCCAAACATTAATTCTGTAAATTCTTTGCTTCTCAAGGCCTTGCAATTTAGAAGTTATAATCAGCAAAA AGAAGCTGCAGCTGCAGAACATTTTGCAACATCATACATGATGCCTCAAGGAGTTTCCCACCACCTTGGAACTGACCTGA GCTCAAATAATCTCAGTGCTTCTTCTTCAAGAGTTTTAGAGTGTATGCCACAGCAGCAACATCAGCAGGAGCAACCATTC AATTCGGACTCCATTTGGTGA
Protein sequence (LotjaGi2g1v0206500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEENLPPGFRFHPTDEELITYYLTSKVSDTNFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRA TESGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKTTAAKKLQQ TSSSQPESPCDTTSMVNEFGDVELPNLNNIASSSGHGLTNINSAQTFNYDLMSNNNVNTNMNLTMNWPPATGVSSLPWPS GLLNPNINSVNSLLLKALQFRSYNQQKEAAAAEHFATSYMMPQGVSHHLGTDLSSNNLSASSSRVLECMPQQQHQQEQPF NSDSIW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 322 | 322 | 3.7E-110 | – | |
| PANTHER | 1 | 322 | 322 | 3.7E-110 | – | |
| SUPERFAMILY | 3 | 151 | 149 | 2.88E-63 | ||
| ProSiteProfiles | 5 | 151 | 147 | 60.179 | ||
| Pfam | 6 | 130 | 125 | 4.6E-40 | ||
| Gene3D | 14 | 157 | 144 | 5.0E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0206500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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