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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0206600 |
| Transcript ID | LotjaGi2g1v0206600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1666 family protein; TAIR: AT1G73850.1 DNA ligase (DUF1666); Swiss-Prot: sp|Q6FSU2|GATF_CANGA Glutamyl-tRNA(Gln) amidotransferase subunit F, mitochondrial; TrEMBL-Plants: tr|A0A0B2RI97|A0A0B2RI97_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0206600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:65020221..65025365) extracted from Lotus japonicus Gifu genome v1.2.
GCCACACTTGTCCAATATTACAAACTTTTATGACGGATTTACCCTTGTTGCTTAAGGCTTATCATTTGGGATGTGAAGTG GGTAAATAGTAAAAACAATTTTGGGGATATATTAGAGATTGTGATTTGTGAGTAATTTTTGGAGTATGTTGATAGAGAAT GATAGATGTTAAGTTAGTGTGCTATGAAAGTAACCAAGCCTGCTTTTTCTAGGACTTTGCTTTGGTCATTGGTGGAGTTC CTTTGGAACACAATTTGAAGGAGCAAAGCAACCACTAAGGAAAAAAATGCCATGTTCAAAAGAAGAAGCTCTTGTTAGAC TCTTCTACAATGCCTCAAGCACTTTCCAGCTTCTCTTTCTCTTCCTCTTCTCCTCTGCCAATTTGCTTCTCAAGCTCTCA AACTTCATCACCAGCTACTCCATATTCCAAAGGTCCTAATTCTGCTGCTCTTAATTTCTCATTTTCTCTTGTTCTTCTCC CCCCTCAAATACAAAAATTTCCTCCACCATCTAACTCACAATTAAGTTAATTTCTTTTTATTTGTTGCAGAGATCAGCAA TATGACTATGTGTCCTCTGAATGTGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTCATGAAAGCTATTCTTA TGCTGGTTCTATTGACAGAGAAGATCATTTAGTAGCTGACATAGTTTGTGGTGGAGAAACTCTTTTGTTTCTGCATAAAA ACCACCCTCAGGGGAATAATTCTTCTTCTGAAGAATTCATTAGTCCTCGAGATAGTTTGATTGAAGAAGATTCAGAAGAA AACAATTCCACAGAAACTTTATCTATTCATAATTCCCCTCTTGTTTCAGAGTTTGAAAATGAAGTGACAGAAGAAGTTGA AGAAGAAGAAGAATTTCCAGCAGAAGATGCTGATTCTGTTCCAAATTCTGTCCCAATTGAAAGCAGGCCCACTTCTCCCA TCACCCTGAACATACACAAAAGTGACATAGTGGACAGTGACAAAAACTGTGACGGTATTTCACATCATAGCTAGAATCTA GTTTGTTACATTATTCACATGCACCACTTATAATTTGGCACTAAACTACTTCACTTCTGCAGAAAATCATGTTCATATTG GAATTATAAGAAACAAGAAGGTGCAAGAAGAAAATCTCACAAGAGATGAGAGATTCTTTGTCATTGGTCCTACACAATTA GAGACTAAGAAGCTGATTGTTGATGAAAAAGATGAGGAAGAAATATATGGTGATTCCTGCACTGTTGGGTCCACATCTAA GAGCTCCTCTGATTGGAGGAGCTCCATTAATTGCAGGGACTCTGGAACTGATGACCCTTTTTCTTCTTCATCAAGAAGAA GCTGCCCCAAGTGGGAATCATACACAGTTTTCCAGAAATATGATGAAGAAATGTCATTCCTAGACAGGATTAGTGCACAG AAACTTCATGAAACTGGTAACTTCAACATATCCTTTTGTGTAATTTTTAGTCCATGATTGCAAGTTTAAGTCCATGTTTT GAAATTTTTTCTAACAAGTGATTTTGAAACCAAAATCAATTCTAGATAGAAATTTAATTGAGTAGCTTCTGCTACTAGAA TTGATTCTGTCTTTTGAGAAAAGAAGCACATTCAAGCGAATTTGGATCATCTCCTGCCTTGAAGCCTCAGTAATAGCAAA ATGATAACTACATAAAAGTTTTGACAAAATTAATATTTTACAAATCAATCTGAACCATTTAATATAAATCAAGAGCTAAG AATTTGCAGTAGAGAGTTGTAGAGAATATGATTGCACATGATTCATGTTAAATCCGAGCATGATATAAATTAGTGTATGT TGAGGATTGATTTTATTGCATATTGTTAATTATTAACACCTTAATTATTTCAGAGTCTTTAAGATCTATCAAAGTAGCTC CAAGATCAATATCAGGGCGAATTGTGCACAAAATTTCAACTATGAACAAGAAACCAGATGATACCCGTCACAACCCGTAC CACGAACTAGAGGCCGCATATGTGGCGCAAATTTGCATAACATGGGAGGCTCTTAATTGGAACTACAAAAATTTCCAATC CAAAAGAGCTTCAAGGCAAGATGGTGATGTAGGTTGTCCTGAAACCATTGCACAGCAGTTCCAACAGTTTCAGGTTTTGC TGCAGAGGTATGTGGAGAATGAACCTTATGAGCATGGTAGGAGACCAGAGATCTACGCTAGAATGAGGCATATGGCTCCC AAATTGCTCTTGGTTCCCGAATATCGAGGTATCATTTGCTTATGTGATAAAATTAATTTGTAGAAATATTTATTTAATTT GCTTGTGAACCAGATTTTTTTTTAATCAACAGTAGTCTAATCCTAATAATAATGTTCCATACTCATTTTTATAGCACTAC AATTTCACCTCAAAATCCAAGTTTGATGAGAAATGATGAAGTGATAGGAAATGAGATGAAATAAACAGAAACTTAGTGTA AAATAAATGTAAAAAATTGGGGAAAAAATCCCTGCTCATTTTAAACTTTTTATAAATACAAGTTTTACATCTTTATTTAT CCCTTTCTTCTCCTGTTAATATGTCATGTGTCATCCTTACAAAGGAGGTAAATGAAGTGTAACTCCAAACTAAAGCATTT AATACTATTTATTCAAGATGTGTAAAAAAGTAATGCTAACTAATAGGTTCGTTACCACATCTAAAAATTAGATTTTCACG TAAAGGTAGGGTCAAGTATGTCTTTGTTCATTAACTTTTTTTTATTTTGAAAATTTGTTCATTAACTTTACAACCCTCAT TGATTGGTGTACACCAGTTTTTTCTTACATTGACACCACCTGTAATTAATGGTTCTAATCGTCGCAAATTGTAGGTGCGG TATAAAATAAAAGTTATATATCAATCATTTTTGTTAACTTTAACATATCTTAATTTCTTAATTAATTAACGTTAATATAA TTATTGTATTGCCAAGATTATGATGACTTTTCTTTTTGGTGTGTTAAAGAATCAGATGATGATCACAAGGAGAATTCCTT AAAAATATCGTCAGGTTCATTTCTTGTGATAATGGAAGATGGAATCAGAACATTCATGAATTTCCTCAAGGCTGATAAAG AGAAGCCATGTCAGGTCCTTGCAGCCTACTTTAGGAGAAACCGAAGAGGCTTGATTGATCCAACACTACTCCGGCTTATC AAGAAAGTTAATCAAAAGGTAAGTCATGCATGAAATTTTATATTCCTCGTATTAATAAGTTATTTTCTACTTATTCACAT AGATTAAGAAAATTAATTCCTAACAAGTTGAGTTGTTACTAGTAAACAAGTTAGACATTTATATGAGTGTGAACATGTTC AAACTTCATAAAAATCATTTGTTATGAGAGACAGTAATAATTTCCTGAATAAGTGAGGACATCTGAGTAAAATTAAAAAA AAAAAGCAATTACTCCAAACTTATCAAAATTATGTTAATTTTTTTAAAGAATTCATTGGTAAGGTTAGATAATTGATTAA TTGAATATATATGTGTGTGTGGAGCATTAAAAGATAATGGCTTTTTTTATAATATATTTAATGTTTTATTGAAATTTTAA AGTGAGATATGTTAGGACATATAAAGCTTCTAAATTGTGATTAGGGATATAATTAAGTAGGATAAATTTTTCTTCAGTGC ATTCCACATCACTTTCATATTTTATATTTCTTTCTAACATTTTGTGTCTCCACAACTCTACCTAAAATTTGCAGAAGAAG ATCAAAGTTAAAGATCTTCGCCGTTCCCACAAATGCTTGAGGAAGAAAAAGTTGAAGGAGGAAGAAGAGATGGAGATTTT GATGGCACTCATAGACCTAAAAGTGGTGTCCAGGGTTTTGAGAATGAGTGACTTGAGTGAAGAGCAGTTGCACTGGTGTG AAGAGAAGATGAGCAAAGTAAGAGTCATGGATGGGAAACTTCAAAGAGATTCCACTCCACTTTTCTTCCCTGCACATTGA CCCACAAAAAAAGATGACTATATTGCTTGATGACTGGATGTTGAATGTGCATGAGTGCATCAAAAAGAATATCCACGACA TACTTTTTTGTAAATATACTCCTATATATGGTTAAAGAAAAAGGAGATAGGGGCAAAGTGAAATTAAAGATGTGGGCTGG CATGGAATTTGGAGCCTAAAATCCATGGAAAGGTGGGTAGGATATTGAATGGAAATGCTATTGATGAATATTGAAAGGGA AAGACCAGAATGAAAGCAAGGTACAAGATAGAGACAAGAATAGCTTTAGTTTGCTTTAGCTTTTTAATTAGGGTTTATCT ACAAGGGTTTTGAGCTGAATATCAAAAGAAGAATGAGCAAGCACATGCACTTGTAATAAAGTTAGTCTTAACTCTTAAGC ACTTGGAAAAAAGTAGATCACACTGATAAAAGAATGGTAGGCTTAGTATTTTTTTATTTTTTACGTACTTTCATTTTTCC AAATAAGACAATAAGGACCTCATTTACTTTTTTGATTGAGAAAAGAAAAATAAAGGAATAAAATCTCAAAGGAGCACCTA GAACTTCTTGCAGGTATGAGTACTATTATCTTGGAAGGCAATTTACATAAAATTATATCCTTTATATAAAAAAATGTTGA TGAAAAAAATGTTGTCTTTCAGCTATCTACATTTCTTTCTACATATGCAAATCCTTTCATTTTAGTCTATAGGTTGGCAC ACTGGTAGGCGTGCAGGACCGGGGTTTGAGTCTCATCCCCTAAGGGTATGAGTTTGACTTCCCCTGCAAACAAAAATATT AAGTTGGTGCACATTCTTACTTGGGAGATTCTTAGCGTTCAAACATGTAATTGGAGTAGGCCTTTCCTAATCTCTACAGA GTTAAAAGAGGAGACAATCCTCGTTTACTAGAGATCCTCGTGTATCATTAGCATTTTGTCCGGTTGGCATGGAGGTCCAT GTAATTTTTTTTGGTAATATTGACCAAATTGCTGACCTATGCGATATTGGGGCTCATTGTAAATGAGCTATGAAAAATGT AATTGGTGCATTGTTGTTGTTACAGGAAGGGAAATTGGGGAAAAATTATATATTGCTAGGATGAATATGGTCCCAAGGGA TTCACATTTTCAATTTAGATTTCAA
CDS sequence (LotjaGi2g1v0206600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCATGTTCAAAAGAAGAAGCTCTTGTTAGACTCTTCTACAATGCCTCAAGCACTTTCCAGCTTCTCTTTCTCTTCCT CTTCTCCTCTGCCAATTTGCTTCTCAAGCTCTCAAACTTCATCACCAGCTACTCCATATTCCAAAGAGATCAGCAATATG ACTATGTGTCCTCTGAATGTGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTCATGAAAGCTATTCTTATGCT GGTTCTATTGACAGAGAAGATCATTTAGTAGCTGACATAGTTTGTGGTGGAGAAACTCTTTTGTTTCTGCATAAAAACCA CCCTCAGGGGAATAATTCTTCTTCTGAAGAATTCATTAGTCCTCGAGATAGTTTGATTGAAGAAGATTCAGAAGAAAACA ATTCCACAGAAACTTTATCTATTCATAATTCCCCTCTTGTTTCAGAGTTTGAAAATGAAGTGACAGAAGAAGTTGAAGAA GAAGAAGAATTTCCAGCAGAAGATGCTGATTCTGTTCCAAATTCTGTCCCAATTGAAAGCAGGCCCACTTCTCCCATCAC CCTGAACATACACAAAAGTGACATAGTGGACAGTGACAAAAACTGTGACGAAAATCATGTTCATATTGGAATTATAAGAA ACAAGAAGGTGCAAGAAGAAAATCTCACAAGAGATGAGAGATTCTTTGTCATTGGTCCTACACAATTAGAGACTAAGAAG CTGATTGTTGATGAAAAAGATGAGGAAGAAATATATGGTGATTCCTGCACTGTTGGGTCCACATCTAAGAGCTCCTCTGA TTGGAGGAGCTCCATTAATTGCAGGGACTCTGGAACTGATGACCCTTTTTCTTCTTCATCAAGAAGAAGCTGCCCCAAGT GGGAATCATACACAGTTTTCCAGAAATATGATGAAGAAATGTCATTCCTAGACAGGATTAGTGCACAGAAACTTCATGAA ACTGAGTCTTTAAGATCTATCAAAGTAGCTCCAAGATCAATATCAGGGCGAATTGTGCACAAAATTTCAACTATGAACAA GAAACCAGATGATACCCGTCACAACCCGTACCACGAACTAGAGGCCGCATATGTGGCGCAAATTTGCATAACATGGGAGG CTCTTAATTGGAACTACAAAAATTTCCAATCCAAAAGAGCTTCAAGGCAAGATGGTGATGTAGGTTGTCCTGAAACCATT GCACAGCAGTTCCAACAGTTTCAGGTTTTGCTGCAGAGGTATGTGGAGAATGAACCTTATGAGCATGGTAGGAGACCAGA GATCTACGCTAGAATGAGGCATATGGCTCCCAAATTGCTCTTGGTTCCCGAATATCGAGAATCAGATGATGATCACAAGG AGAATTCCTTAAAAATATCGTCAGGTTCATTTCTTGTGATAATGGAAGATGGAATCAGAACATTCATGAATTTCCTCAAG GCTGATAAAGAGAAGCCATGTCAGGTCCTTGCAGCCTACTTTAGGAGAAACCGAAGAGGCTTGATTGATCCAACACTACT CCGGCTTATCAAGAAAGTTAATCAAAAGAAGAAGATCAAAGTTAAAGATCTTCGCCGTTCCCACAAATGCTTGAGGAAGA AAAAGTTGAAGGAGGAAGAAGAGATGGAGATTTTGATGGCACTCATAGACCTAAAAGTGGTGTCCAGGGTTTTGAGAATG AGTGACTTGAGTGAAGAGCAGTTGCACTGGTGTGAAGAGAAGATGAGCAAAGTAAGAGTCATGGATGGGAAACTTCAAAG AGATTCCACTCCACTTTTCTTCCCTGCACATTGA
Protein sequence (LotjaGi2g1v0206600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPCSKEEALVRLFYNASSTFQLLFLFLFSSANLLLKLSNFITSYSIFQRDQQYDYVSSECDEEEEEEEEEEEIHESYSYA GSIDREDHLVADIVCGGETLLFLHKNHPQGNNSSSEEFISPRDSLIEEDSEENNSTETLSIHNSPLVSEFENEVTEEVEE EEEFPAEDADSVPNSVPIESRPTSPITLNIHKSDIVDSDKNCDENHVHIGIIRNKKVQEENLTRDERFFVIGPTQLETKK LIVDEKDEEEIYGDSCTVGSTSKSSSDWRSSINCRDSGTDDPFSSSSRRSCPKWESYTVFQKYDEEMSFLDRISAQKLHE TESLRSIKVAPRSISGRIVHKISTMNKKPDDTRHNPYHELEAAYVAQICITWEALNWNYKNFQSKRASRQDGDVGCPETI AQQFQQFQVLLQRYVENEPYEHGRRPEIYARMRHMAPKLLLVPEYRESDDDHKENSLKISSGSFLVIMEDGIRTFMNFLK ADKEKPCQVLAAYFRRNRRGLIDPTLLRLIKKVNQKKKIKVKDLRRSHKCLRKKKLKEEEEMEILMALIDLKVVSRVLRM SDLSEEQLHWCEEKMSKVRVMDGKLQRDSTPLFFPAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 597 | 597 | 2.6E-271 | – | |
| PANTHER | 1 | 597 | 597 | 2.6E-271 | – | |
| Phobius | 12 | 35 | 24 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 36 | 597 | 562 | - | – | |
| MobiDBLite | 125 | 185 | 61 | - | – | |
| MobiDBLite | 136 | 150 | 15 | - | – | |
| MobiDBLite | 152 | 168 | 17 | - | – | |
| Pfam | 358 | 595 | 238 | 2.4E-94 | ||
| Coils | 521 | 541 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0206600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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