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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0209200 |
| Transcript ID | LotjaGi2g1v0209200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CONSTANS-like zinc finger protein; TAIR: AT1G25440.1 B-box type zinc finger protein with CCT domain-containing protein; Swiss-Prot: sp|Q8RWD0|COL16_ARATH Zinc finger protein CONSTANS-LIKE 16; TrEMBL-Plants: tr|A0A0L9VHX8|A0A0L9VHX8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0209200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:65599463..65602486) extracted from Lotus japonicus Gifu genome v1.2.
CCAACATTTACATAAACAATAATTGAATTTGAACCATTTGGGTATCTAATCTAGATAAATACATGAACTATTGAACACCC CTTCTATACTCATTCCTCTGACACCTTGTTGGTAACTGTACTCACTCCCAAAACTGCAACACGATTGTGATTTTGGCCGC GACAGCCACGTTTATTTACAGTTTTTTACAACACGAAGAACCGTGACGCGGCCGCAACTGCAATTTAAAAGCTTGTTGGC AACTAACTATACATTATATAGTTAAATTCAGTTTAAAATCAGACACCAGTTCAATGATGAGTGAAATGAAAGGTGCTGCA AGTGCATTGGGAGCCAAAACAGCAAGAGCTTGTGATAGCTGCTTAAAGGTGAGAGCAAGGTGGTATTGTGCTGCTGATGA TGCTTTCCTCTGCCATGGCTGTGATAACTCTGTTCACTCTGCAAACCAATTAGCTAGCAGGCATGAAAGGGTGAGGCTTC AATCTGCTTCATCATCTAAGGTGAAGAAATCGTCACAGGCTCAGGCATGGCACAGTGGCTTCACACGCAAGGCAAGAACC CCACGTCACAACAACAAGCACCAACAACAAAGACTCAAAAATGATCAACAAGTGCTTTTCAATAATAACACATTTTTTCC TCTTGTGCCTGAGTTAGGAAGTGAAGAAACTCTGCTTCATGATGAGACTGATGAGGAGCTTCTATGTCTTGTGCCTGTGT TTGATGGATTTGATGAAGGGCTTTGCAGTATATACAAAGATGTGAAGGATGAGAGGCTGGAAAACACCACCATAAAAAGT GATGTTGGTGGTGGTGGTGATGGTGAAGAAAAAGCCTTTGACTTGGAGAATTTTTCCTCCCATTTTCTCCCATCAGATAT GGATCTTGCTGAGTTTGCTGCTGATGTGGAAAGCTTGCTTGGTGAAGATTCATTGAAGGGATCAGAACTGGTTAATTGCA AAGATGAACTTGGAGGTGCAATGGTGAAGGTTAAGGATGAAGAATTGGATGCTGATGTGGCTTGTCATTTGGATTCAATA CTTGAAATGAATAGTAGTGAGGTTTTTGATTGGAATTTTGAATCAGAATCACTGGTAGCAGCTGAAGAGGAGGAAAAAGT GGCGGTTCCATTGGTGGAAAGTCGCGGTGCTAAGAAGAAGATATTTTTGAGGCTAAACTATGAGGAAGTGATTGCTGCTT GGGATAGCCAAGGTTCTCCATGGACAACACCAACCCCACCTCAGTTCAACTCTGATGATTGCTGGCCAGACTTTTTGGTA ATTTCTTCTCTCTACCTATTAATTTGCTTATAGAGCAATGCATTAATTGCATGCTACTCTTCACAATTCAGCTAGCACAA GTCTCCTTATTGCATGGGTCAATACAAGAGTCATGCAATTGCATATCTTTCTTGTTGCTTTTTGTTGCAATCAGGATTTT CAATTACAATTGTGTTGTGACTCTTCAAATAATATGTTTGGATCAATTGTGTTGTGTGAGTAGTCCATAATTAATTTTGT TTTTAAAATCAATTATAGAACGATTTTTAAACATGCATCCTAGTTAAAACTGAGGAATATATATTACTATAATATTGTAA CAAAATCTCACAAGCTCAGGTTAATGTGGTTGAAGCAAATATGACAATACCATCGAGATATGATGTCGTGCTCATATCAC ATGATACCATCTTTTTTTTGAAAATCACATGATACCATCTTTAATTTGGAAATTTCTCTTTAGTATATGAATATTTTTTT ATACAAGTTATAAGAATGAGTATGAATGTATGATTGGTTGAGAGAATAAAAGTGGAATATTCAATTATTTTCAAAATCAA ATCTCAACTTATTGTTATGCATTTCACAATATGTTTTTGGTACTAAATAGCATTGTTACTCTAATTTTGAACCCTAATTG CAATCAAGTCAACAAGTTAAAATATAGAATGAATTTTTACATTAAGGAATCTCACACTTCATGACACAAAACTACTAGCA TGTTATGACGCTCTTAGCCACAAAAGCTATTTCTAATAACTTTTCTGATAATCACTTCTCCCTCAAACATGAAAATTTAC TGAGTATTCAAACATACATTACTTGTATACTTTATTGACATGTTCAAGTTTTTTGTGAAGGGTTCGAGCGGCGCAAATGT CCAATGCTGCTATGGGGAAGTAAGGAGCTTAACGGGGCAGGCAATAGGGGGTGGTGTAGATGGAGGAAGAGAAGCAAGAG TCTCACGGTACCGAGAGAAGAGAAGAACACGTTTATTTGCCAAGAAGATAAGGTATGAAGTAAGGAAGTTGAACGCAGAG AAAAGACCAAGAATGAAAGGTCGATTTGTCAAGAGGACTTAATTCCTTTGTTGGAGCCACTACAACTGCTTTTCAAGCTC AATAACCACTCACATCAAAGTGATCACTTTTCCTAGAAATTAGTGCATCTTCGGAGAGTCTTCTACAATTGATTTTGAAG CCAAAATCAATGGTAGGAAAGAGCTTTGATGAGTAGTTTCCGAGTTTTTGAATTGATTCTGATGGAAGCTTATCTTGGAT TACTTTGGTGTTACCATGTATAGCCTCCATAAAGTGCATGTGACATCAAGCTTCAAAGTGATTCACTTTTCCGAGAAACT CTTCTCAAATTAATTCTGAAGCCAGAATCAATTATGGAAGAAGCTTTTGTAAGTAGTTTCATAGTCCAAGCTTCTCTTGG ATTACTTTGGTGTTGTCATGTATAGCCTGTACTAAAGTAACATTAACCTGCTAGGTCAGGTTTCTCTCGCTTGGGATATT TTTTTGACTTTCTCTAGCAGGTTTTATTTAGTACTAATGGAAGTGGCAGTCCTTCTCAGCATTTGGGTAATCAAATTTCA AAAGGCTTTCACAATGTTCGTTATGATCAGAAACTCAGTTATTTATGCTGATGCTACCATTACTTTAACTTTTCTATGCT ACTGATTATCAGTGTTTAATATCAGGTACCTATATCTACAAGTTATACATCTATATAAGAGAAG
CDS sequence (LotjaGi2g1v0209200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGTGAAATGAAAGGTGCTGCAAGTGCATTGGGAGCCAAAACAGCAAGAGCTTGTGATAGCTGCTTAAAGGTGAG AGCAAGGTGGTATTGTGCTGCTGATGATGCTTTCCTCTGCCATGGCTGTGATAACTCTGTTCACTCTGCAAACCAATTAG CTAGCAGGCATGAAAGGGTGAGGCTTCAATCTGCTTCATCATCTAAGGTGAAGAAATCGTCACAGGCTCAGGCATGGCAC AGTGGCTTCACACGCAAGGCAAGAACCCCACGTCACAACAACAAGCACCAACAACAAAGACTCAAAAATGATCAACAAGT GCTTTTCAATAATAACACATTTTTTCCTCTTGTGCCTGAGTTAGGAAGTGAAGAAACTCTGCTTCATGATGAGACTGATG AGGAGCTTCTATGTCTTGTGCCTGTGTTTGATGGATTTGATGAAGGGCTTTGCAGTATATACAAAGATGTGAAGGATGAG AGGCTGGAAAACACCACCATAAAAAGTGATGTTGGTGGTGGTGGTGATGGTGAAGAAAAAGCCTTTGACTTGGAGAATTT TTCCTCCCATTTTCTCCCATCAGATATGGATCTTGCTGAGTTTGCTGCTGATGTGGAAAGCTTGCTTGGTGAAGATTCAT TGAAGGGATCAGAACTGGTTAATTGCAAAGATGAACTTGGAGGTGCAATGGTGAAGGTTAAGGATGAAGAATTGGATGCT GATGTGGCTTGTCATTTGGATTCAATACTTGAAATGAATAGTAGTGAGGTTTTTGATTGGAATTTTGAATCAGAATCACT GGTAGCAGCTGAAGAGGAGGAAAAAGTGGCGGTTCCATTGGTGGAAAGTCGCGGTGCTAAGAAGAAGATATTTTTGAGGC TAAACTATGAGGAAGTGATTGCTGCTTGGGATAGCCAAGGTTCTCCATGGACAACACCAACCCCACCTCAGTTCAACTCT GATGATTGCTGGCCAGACTTTTTGGGTTCGAGCGGCGCAAATGTCCAATGCTGCTATGGGGAAGTAAGGAGCTTAACGGG GCAGGCAATAGGGGGTGGTGTAGATGGAGGAAGAGAAGCAAGAGTCTCACGGTACCGAGAGAAGAGAAGAACACGTTTAT TTGCCAAGAAGATAAGGTATGAAGTAAGGAAGTTGAACGCAGAGAAAAGACCAAGAATGAAAGGTCGATTTGTCAAGAGG ACTTAA
Protein sequence (LotjaGi2g1v0209200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSEMKGAASALGAKTARACDSCLKVRARWYCAADDAFLCHGCDNSVHSANQLASRHERVRLQSASSSKVKKSSQAQAWH SGFTRKARTPRHNNKHQQQRLKNDQQVLFNNNTFFPLVPELGSEETLLHDETDEELLCLVPVFDGFDEGLCSIYKDVKDE RLENTTIKSDVGGGGDGEEKAFDLENFSSHFLPSDMDLAEFAADVESLLGEDSLKGSELVNCKDELGGAMVKVKDEELDA DVACHLDSILEMNSSEVFDWNFESESLVAAEEEEKVAVPLVESRGAKKKIFLRLNYEEVIAAWDSQGSPWTTPTPPQFNS DDCWPDFLGSSGANVQCCYGEVRSLTGQAIGGGVDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR T
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 401 | 401 | 1.6E-158 | – | |
| PANTHER | 1 | 401 | 401 | 1.6E-158 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 7 | 14 | 8 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| SMART | 15 | 62 | 48 | 7.6E-9 | ||
| ProSiteProfiles | 15 | 62 | 48 | 10.324 | ||
| Pfam | 17 | 60 | 44 | 6.6E-6 | ||
| CDD | 18 | 62 | 45 | 1.67523E-8 | ||
| Phobius | 20 | 401 | 382 | - | – | |
| MobiDBLite | 63 | 82 | 20 | - | – | |
| MobiDBLite | 63 | 103 | 41 | - | – | |
| ProSiteProfiles | 358 | 400 | 43 | 15.993 | ||
| Pfam | 358 | 400 | 43 | 1.4E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0209200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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