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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0211400 |
| Transcript ID | LotjaGi2g1v0211400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sterol-8,7-isomerase; TAIR: AT1G20050.1 C-8,7 sterol isomerase; Swiss-Prot: sp|O48962|EBP_ARATH Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase; TrEMBL-Plants: tr|I3T2H6|I3T2H6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0211400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:65873687..65877433) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTTCCAACTCAACAACACAGTCAACACTTCACAACACCACTCTCATTCTTCATTCTTCATTCTTCATTCATTCCCAT CTCGCGAAGACGAAAATGGAGGGATCTCAAGTCGCACACAGTCACCCCTACGTTCCACGCGATTTGCATCTACCTGACTA TGTTCCTTGCTTCCTCTCTCAGTCCAGCATTCTCTCTGTCTTTGCCATCTCCACTCTTCTCGTCGTTTCCTTCATCTGGA TCTTCTCAGGTACCCACCCCTTCACCATTCCTCTCTCTTTTCCTTTCAATTCATCATTTATTCATTTTTTTCTGGTTTCT CTTCTGATTTCAATGATATTGACCAGCGATTTTGAGGTTGAAATGAAAAATTCTGCAATTCTGAGATTTCAGTGAAATGC AAATTTTCAAATACATCGATTTTGTGTAATTGAATAACGACCCATTAGTGAAATTAGCTTATTTATCAGAAAAAGATACT TTTTTTAATGTAAACTAGGTCCAGTTTCAAATCCTTCACTTACAATGTCAAAATAGTTCAATGTCAATGATGACAACAAA ACTGAATATAGGTCAACTTTTCATTCCATGTTACTTGTTTCCGAATCTTTATTTGCATTTGGCACACATAAGATGAATAG ATGAGCACTTAGAAGTGTAGGATTCAAGTTATGTGATGTGTTATGTGTTCCTTCCTTACTTTTTTTTTTTCTCTGGTTAA GAATATATAATGAGGCTAAAATATATGAATGTATGTGTGATTAACTTTGTTCTGTGGTGTGATTTGTTATTCAACACTGT TCTGATCATTTACTATCTAAGTGGGATTGCCATATATTCTGTGGATCTATTCTGCTATTTGTTGTCCTGCTTGTGACCAT TATATCATGCTTTCTAATTGTTGACAATATGTGATAATCTTTAATGGAGATGGTTACTTGCTTCAAACTAGAATCATGGA CTGAAATTTTCTACAAGCCAATTTTATTGTTTGTGCATGAAAGAAACCATATCAGTTTGGCCTACACTGTCTCAGCTCAA TCTATATGTTTTATCACTTCCTTTATCCTTTAGTGCATATGTTTTCTTTCAATTAAGCTCTTCACTAGGTACTCAAACAA TATCATTCTTTGCAAGTTCAAAGTTCAAGGATCAGGCTGTCTGTACTTTGTTATGGCATTCCATTATCATTTCAGTTTGA ATATCTATCCTCTGATAGGTGGAAATGGTTTTTTAGGTTTCTCTGATTTTGTTTACATGACTGAATTTTCCCAGGACGCC TTCCTAAGAAATCAAAAGTTGATAGAGTGTTAATGTGCTGGTGGGCCTTTACTGGCCTCACACACATAATTCTTGAGGGT TACTTTGTTTTCGCACCAGAGTTTTTCAAGGATAAGACTGGCTTCTACCTGGCTGAAGTTTGTGAGACATTTAATCTTTC TCTGACATTCAATACAGACATAAGATAGTTTGAATTTGGAGCACCTTCAAGGAATTTGAATTTTTAGTTAATGGAAGTGT CTTTTTAACACATAACAGGGAAGGAATATAGCAAAGGGGATTCAAGGTATGTAGGAAGGGATGCAGGAGTAGTTACTGTT GAAGGACTAACAGCAGTTATAGAGGGTCCAGCTAGCCTTCTAGCAGTGTAAGTTGTAACTAAGGAGCAAAATATATGATC AACAAGCTAATGCTATCATGCTGCAACTAGTGAATTTTTGTTTATCCAGTCTAATTCTATGTTTTTTTATGTTTAATCTT CTCTTGATTTTCATTTTAAATTTAACTGTTTGTGTTACCAATATGGATTACAGATACGCTATAGCTACTGGAAAGTCATA TAGCTACATGCTTCAGTTTGCCATTTCTCTGGGGCAGCTATATGGAACTGCTGTGTATTACATAACCGCAATCTTGGAAG GTGATAATTTTTCCACAAACTCATTTTACTATTATGCATACTATATTGGAGCAAATTTCTCCTGGATTGTGATACCCTCG ATCATCGCCATCCGCTGCTGGAGGAAGACTTCTGCTGCATTTCGAGTTCAAGGCCAGACAAAAAAGCCTAAAGTTCGATG ATGCAAAGTGCAAACTTGTCAGGTTATCGTTGATGACTTCAGTTATTAAGTTAATTGGGATGGTTAAGGTAGGAGAGGAT ATTTTAAATGAATTGTTTCAATTGATTCTCTTAAGCTGCATATCTCCAAAATTGAATATTCCATTATTATTTGAGAAGAT GGTGTTTAATGTTTTTAACTTAGTTTTCTTTTGATACTGACTGTTTTGAAATTCCAATTGTTATTCGGAATTAAATGTGA ACACACGTCCTTCTGCTCATAGTTTTTCTAGGATTCACGTCGTTGTTCTAGATCTTACACTCGCTTAATTTGTTTCTTAA TTATTTGTTTGTGATGACTTGTAGGTTGTTTCAGAGAGCAAGTAGCTTTGTTACTTTGTACTCAACTTCATGTTTTGTTT GTGTTTGTTTGTTAGATATTTTATTTTTGGTTACATGGAAAGTCCCAAAACAGTATATAAAACCATTTTTGTGAATATAT AAAGGCATATAAACACTTGAAGAGCAAGTTTCAGTATGTTAAGCAGCGTTGTCAATAGCGCTATACCGGCAGAGCGTGGT GGATCGACGGTTGGCCGCGACGTTGGAGGTCGTAGTGGCGCGGAAATCGCGTAGTGGCCACAATTGCGCAAGGAAGAAAC AAGTATAAAAAACGTTAAATTCATACCGAAAACTCCAAATTCCCCCTAGATTTAAACATTAGGTTAAACTTTTTAAGGGC ATTTTTAGGTTTTCCTACCATTTAATGAAACATTGTGTTTCATTCCCCGAAACCTCTGTAATCGAAAACCCTACTCATCC TAGCAAAAACCCTAAATTACCCCAGAATTTAAACATTAGGTCAAAATTTTAAGGGCATTTTGGTGTTTTCTCAGCATTTA ATGAAATGTTGCATTTCATCCTTCTTCAACTTGGAGGCTCTGCGATCTCTTTCATTTTTTTTCTCGATGAAACGCTGTGT TTCCTCCTTTGTCCTCCTCCTTTCAGCCCCTTTCTTCCTTCTTCCTCCTCCTTCTTTAATGTAGTTGCCATTGCGCTACA TGCTAGCGTTTTTTGGGCTTGCTGTTACGCAATGCTATTTGCCATTAACAACATTGATCTTTAAGTATATTAATCAACAT CAAAATGACTAGATTAATAGCTATATTGTATTGTGTTTAGCATTATGTTTTCACATAAATGCAGTATACATAATGGGTCT ACATATCGACCAAATTTTTAATTCTCATGTACTGTTGAGTTTTGAGCATTTCTTTTTATAATTGTCTAATTAGATAGTTT TTTTCCTTAAAAAATAAAGGTTTAATTGCAACTTTAGTCTCCGACGTTTACAAAAATCATAATTTTAGTCCTTCTCCTAA TTTAATTACAAGACTAGTCCCTCACGTTTGCTCCCGTTTGCAATGTTAGTCTTTCTGCCTAATTATTAACGGATGAGGCT TATGTGGCAAGTCTTTGGGGACGTGGCACTACCACTAGAGAAAGGACTAAAATCATAGTTTTGTAAACGTCATGGACTAA AGTTGCAATTAAGCCTAACTAAAATACTAAGATATAAGGATGAGGTGAGGTGAGAAGAGGTGCCCAACAAGAGCCTCAGC TAGCCTATTTATACTAATAAACAAACTTGTCCAGTAAGAAAGAATTCCTTGTTCTTTAAGTCTTCAC
CDS sequence (LotjaGi2g1v0211400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGATCTCAAGTCGCACACAGTCACCCCTACGTTCCACGCGATTTGCATCTACCTGACTATGTTCCTTGCTTCCT CTCTCAGTCCAGCATTCTCTCTGTCTTTGCCATCTCCACTCTTCTCGTCGTTTCCTTCATCTGGATCTTCTCAGGACGCC TTCCTAAGAAATCAAAAGTTGATAGAGTGTTAATGTGCTGGTGGGCCTTTACTGGCCTCACACACATAATTCTTGAGGGT TACTTTGTTTTCGCACCAGAGTTTTTCAAGGATAAGACTGGCTTCTACCTGGCTGAAGTTTGGAAGGAATATAGCAAAGG GGATTCAAGGTATGTAGGAAGGGATGCAGGAGTAGTTACTGTTGAAGGACTAACAGCAGTTATAGAGGGTCCAGCTAGCC TTCTAGCAGTATACGCTATAGCTACTGGAAAGTCATATAGCTACATGCTTCAGTTTGCCATTTCTCTGGGGCAGCTATAT GGAACTGCTGTGTATTACATAACCGCAATCTTGGAAGGTGATAATTTTTCCACAAACTCATTTTACTATTATGCATACTA TATTGGAGCAAATTTCTCCTGGATTGTGATACCCTCGATCATCGCCATCCGCTGCTGGAGGAAGACTTCTGCTGCATTTC GAGTTCAAGGCCAGACAAAAAAGCCTAAAGTTCGATGA
Protein sequence (LotjaGi2g1v0211400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGSQVAHSHPYVPRDLHLPDYVPCFLSQSSILSVFAISTLLVVSFIWIFSGRLPKKSKVDRVLMCWWAFTGLTHIILEG YFVFAPEFFKDKTGFYLAEVWKEYSKGDSRYVGRDAGVVTVEGLTAVIEGPASLLAVYAIATGKSYSYMLQFAISLGQLY GTAVYYITAILEGDNFSTNSFYYYAYYIGANFSWIVIPSIIAIRCWRKTSAAFRVQGQTKKPKVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| PANTHER | 8 | 224 | 217 | 5.3E-104 | ||
| PANTHER | 8 | 224 | 217 | 5.3E-104 | – | |
| TMHMM | 28 | 50 | 23 | - | – | |
| Phobius | 32 | 51 | 20 | - | – | |
| Pfam | 37 | 211 | 175 | 4.2E-54 | ||
| Phobius | 52 | 62 | 11 | - | – | |
| ProSiteProfiles | 60 | 202 | 143 | 15.912 | ||
| Phobius | 63 | 84 | 22 | - | – | |
| TMHMM | 63 | 85 | 23 | - | – | |
| Phobius | 85 | 122 | 38 | - | – | |
| TMHMM | 118 | 140 | 23 | - | – | |
| Phobius | 123 | 141 | 19 | - | – | |
| Phobius | 142 | 147 | 6 | - | – | |
| TMHMM | 147 | 169 | 23 | - | – | |
| Phobius | 148 | 171 | 24 | - | – | |
| Phobius | 172 | 182 | 11 | - | – | |
| Phobius | 183 | 206 | 24 | - | – | |
| TMHMM | 184 | 206 | 23 | - | – | |
| Phobius | 207 | 225 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Sterol metabolic process | The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. | ||
| Molecular function | Cholestenol delta-isomerase activity | Catalysis of the reaction: 5-alpha-cholest-7-en-3-beta-ol = 5-alpha-cholest-8-en-3-beta-ol. |
Expression pattern of LotjaGi2g1v0211400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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