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LotjaGi2g1v0220400.1

Overview

Field Value
Gene ID LotjaGi2g1v0220400
Transcript ID LotjaGi2g1v0220400.1
Lotus japonicus genome version Gifu v1.2
Description Ribosomal L11 methyltransferase; TAIR: AT4G28830.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q8K1A0|METL5_MOUSE Methyltransferase-like protein 5; TrEMBL-Plants: tr|I3SR90|I3SR90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0220400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:67570779..67575981) extracted from Lotus japonicus Gifu genome v1.2.

GTCGGGCCATGACCCATGAGATGAAGTGAATAATACAACAGAGACAGTGAAAGAGAAAGTTTGGTCCTTCATCGGCGTCG TCGCTTGTCGGAGTTGTTCGCCGGAAAACATGAAGCTGAAGCAGCTAGAAGGCCTTCTCGGTGGTCTTGACCAGTTTCCT CACCCAAAGGTTTCTCTTCTCCCTCTCACTCCTTCCAATTTCCTTCTTCTATTAACAAACTATAGCTGTGAAGAATCACT CACTCACTCACTCATTTGATTGTGGGTTGTTGTTGCAGGTGGAGCTTGAGCAGTATCCAACAGGACCCCACATCGCTTCT CGAATGCTTTTCACTGTGTTACTTCTGTACCCTTTGTTCACACTTCCACCACATTTCATATTTTCACTTTGTTTCTTTCC TTTTATGTCCCTTCAAACTTTACTCATCAAATATGCTTAAGTTTGATTCTTTTGCCATATTTGATGTTCATTTTGTGGTG CTTGGTAATGGGTATTTTTCATTTTTTTTAAAGTATGCTTAGTTTTGGAAGTTGACCATTTCAGTATGTGAAGCTCATTC ATTGGTTACATTACATCCAGTTATGATTATAATTGGTGGTGATTGAAAATAGTTGTTTGATTTTGAGATAAAATTTGGGA TATTTGTTTGCAGTTTTTTGTGCTTTGATAAACATGTGGGAAATTTTTATCTGGTGGGAGGGTTAGGGGAAGATGAGTAG GGGTATTGTACTTAGTGTGTGTTCGAGTGAGCGCTTGCCAATGTGGTTTTGAATGAAGCTGACTCTTGTAAAATTTGTTT GGTTAAACATGGACTGAACTTAAGTGCATGTTTGGAAACCTTTCTACAATTGATTCTGAAGCCAAAATCAATTATGGGGA GAAGCTTATTTGAGTAGCTTTCGGGTTTTACAATTGATTTTAATGAAAGAAAAGTTGATTCAAACATTTCAAGATTCAAC CCCTAATCATGATTGAAAATTTTGGTGAACATGTTTCCAAACATGTTAAAGAAATCACAAAACCATGTTTTGAATAGTTC AAACATGACATAATTCAACCTGTTGTGTGCAAGTATCTATGTATTTGCAAAAAGTTTAGGGATGCATCTAGTGTTTGCCT TTTTAATCTTAGGAATAATAGTAGTAATTCTACATTGTTATAATTCCTATTTCCTTTGCTGTTCACGAGAATCAGGCAGA AAATTCTTTTGGGGATGTGAGCGACAAAGTAGTGGCTGACTTTGGATGCGGTTGCGGTACTTTAGGCATTGCAGCTGCTC TTCTGGGTGCAGAGTGAGTTGCATCAAAACCCACCTGCTTTTATGGGATCTCTCAACATTTTTTCCTCTTTTTTTTTTTC TCATTCCCTTACTTCTTTTTATGCTAGGCTACCTAATTCAGAGCTGACATTAGAACTACATTTATAACAGCTATTTTAAA ATTTTGAACTACTATTGTATAGAATGAAACCGTGATGAATGAATTCGTATTTCCCAATTTCTGAGCGATACACTAATTCA CATTCACAGTCTCTTATAGTTCCATTGTTTCTGAACCAAATCTTATGAATGAAAATTCAAATTCATGTTTAGTGAGTAAA AGTGTACCAAATACCTTTTTGCCCTTTCAATCAAATTAATATGTTCTCATGTTACTATATCCAACTCTAATATTCTCTTG ATTTGTGTTAGCATTGATCAGACATGTAGTCAGCATTGACATTGATCCAGAATCTCTTGAAATAGCAACTCTTAATGCTG AAGAACTTGAGGTATTGTCTTTGTCCTGATAAGTATTTTTAATGAGGGCATAGATTTGATGATAGTCAAGTCTCTCGTTT GCGGAAAAGAATAATAATGTTGGATATGTTTTGAGTATTGTACATAAAAGTGTTATGTTAGATGACAATGATTCTGGTAA ATGTTTTGATCTTCTAATGGAATGAGAGGCGATGAAAAGTGACCTTTTTATAGATCCAATAAGTATTTTTTTTATCAAAT GCAATAATTATGTAAAAGTTGGTATTAATCACTGATACACCCCATTTCTTTGTTATTCAATTAAAACTGCAGCTGGACAT GGATTTTATTCAGTCTAATCTCTTGGACTTGGGATGGAGAGGTAGCTTTCTATATCATTCATCATATATTCCTAAGATAG TATGATACCATCGCATTGTATGGCTTTTTATTGTGACATCTTATTTCGGGTACATGACGCATAACCTTAATTACATGCCG GACCTAGTGGGAAAAGCTTTTGTTGTTGCTGTTGAAGTATAACCTATGTCCTTTATTATGGAAAGTATCGGAGAATAGGA TCAAATAGATTTATAGGCAGTTAGGCACTATAAGTTCACGTTATATGGTACCAGTTGGTGGTCTATTTTCTTATTTCCAT TTGTCAAGTGCTAACCTTTTATGTATTAGGTGTTAGGTTGTTTTATTTTTTTGTAAGAAGTTGGTTTATACTTGTCCTCT TAGTGGTTTTACAACACCTACCTGTAAAAATATTGGATTCATTGTTGAATTTTATAGACTCAGTTCAAAACGTGTCTGAT TGTGTTGACCATGAAACTACTGTATTCGTAATTATTGTTGGCATTTTGGACAGCAACAGTCTGAAATGAAGGTTTATTGC CAAGTGCAGTTTACTGATTTTCCTCTGTCTTTCCCTTTTGTCTCTCCCCTGCCCTGCTCTTATGTGGATGTGCAAAGTGA CTTCCATCATGTGTCCAGGATCCCTAATTGAGAATATAATAGATTAAACTGTTTTTCTGAATTGAATTTGAACCATTTAT TCTTATAGTAACTTCTAACTTGTATAATTTTCAAGGATCATTTACTATATGACTTTAGACATTGCATGCTATTTAGAAAA GATTGGTGTATTGTTGACTTGTTCTAGTAGTAGTCAAACAACATTGTCGTGTGATTAGTCAGCTATTTAAGGGGAAATGT GGCCGATTCTAAATCTAGATTTCATCTGTTGCGGAAAACTGTTTCTTTTATAACTTCATATGATCGATCATCTGGGTGTT TTCCCTAGGTCCAATAGTTGATACAGTTATAATGAATCCTCCATTTGGAACTCGGAAAAAAGGTGCAGATTTGGATTTTG TCTCTGTTGCTTTGAAGGTAAGCTAAAGCATGGGTGTTGTTTGTAAACATATGATTCACGGGAATTCTAATCTACCTATG TTCCTTGTATTGCTTTATCAGGTTGCTTCTCAAGCTGTTTATTCTTTGCATAAGACTTCAACAAGAGACGTAAGTCGTTT GTATCTTAAACTAGTTATTAAAATGAGTAATTGAGTTCTGCCACCTGAATTGTTTTTTCTTATTATCTCATGTATCATAT TTATGTGTTTGATTACAGAAGGTATATCAGGCCATTGGTTTCTATCTTCCCGTTCCATGTGGATGCCATTAGTGTTATTT TTTTAAATCTACTTAATATAAGTGTGGTATTCATATGAAGCTTTTTCTATACTTCCTGCCAGTTATTTAAATGCCTTTAG CTACCACATTAGGTTTAAGCATTACCTTTAGCAATTATATGTTCTAATCTTTAACATTTAGAAGTTCAAGATTGGTGGTT TAATCATGAAATTTGAGCAATAAAGTAGGGGTTAAAAATATTTCGTAATATTTTAGTGACCTTGTCCCCCTTTTTTGAAT TTAACATATCAACATATCAGCTCCTTAATATATGCTTTCCCCCCTGTGGGCTTAACAAGCTGCACCTTCTTGCCTGTTGC TGTTTTTTTTTTCAATTTATCATAGGAAAAAGTTAATACAAGTCATAAGCTCATAATCTCAACCTGCTTCAAGCTACATC ACAACTATATGAAATTATTGACTGTCTACTGGTTTAGCTATTCAGTTCAATTTGACTGCGATAGGTTGGTTGGTATAGCA TCACTACATATACTTTTTGCATTATATACTTCATTTCTTTAAATGATTTATTGGTTTAGTCATTAATTTCTCCATGAGCC ATTGGTTGTTTTTATGTTGTAACATTCTTACATTACATATATATTTAGTTTACATTTCTATGGAAGCATTTCCAAAATTC ATCTGATAGAAATTAATTTATAATCATGAATTCCTTTTGTTTGCTTCTCAATGGTATGATAGTAATTTTCCCTCGTGTAT GACACTGAAGGTTCATTTTTTATTTGATTACAGCATGTGAAACGAACAGCCTTAAGGGATTTCGGTGCTAGCAGCGCTGA AGTTCTTTGTGAGGTGAGTGGATTTTACTTCATATTTGATGCGTTGAGTCCTACATTTTAAAAGTCAAATTTAGTATTTT ACTCTGAATCGAGTATTGGCCTCATTTGTGCATAAGCAAATACATATTCTATTCATTAACTATGAGAATAATTTCTATGC ACCGACAATGTAAATGATACCAATCAAATTTCAAGGATGTGGAAAATAAGTTTTTTTTTTATTTAATTTAATTAGTTGAC TTGACACATCCTTATATTGGTTGACAGTGTAAAAAAAACTTAACACTGATAATTTGTACCTTTTTCTCTTTTATTATGTT AACATCCTTATTTTATCATCGAGTATAACACTGTTGAACTTTTCTAGATTATCTAACAAAACTCTGTATTTTGCACCTAT GATCCCGGAACCAAACTTTTCAAATTAATTGACTGAAGTGTTTGCATTGAAGTTTTTTCTATCAAAATATTGTGAACCAT AAATTTCAATCCCATGGTGCAATTCTAGACCTGTCTCTTATTGTTGAAATCTTATTTTTGTTTTCTTGTTTTGGCAGCTT CGGTTTGATGTACCAAAACTTTACAAATTTCACAAGAAGAAAGAGGTAGATATTGCCGTGGATCTCTGGCAATTTGTACC AGCAAGTAATCAAAGCTGAGATATGTAGTGCAGACATGGATAGTGTGTATTGCAGTAGTTATAAGATTGCAAATCAATGA AATTTTGTTATGTACTTCAAAAAATTGTATTTCCCGTCTCACCCCCACCCTAAAACTGTTATAAGCTCTTGTTAAACTTG CAATGCCACTTTAGTTTCTTGTGAATACCTATGAATTCAATAGTTGAGCATGTCCGAAACTCTTGCACATATGACTTGTT TCAAATGACTATTGATGTGTCTGAATACTAGTTAAGTGAAATGTGAACCGTGAACCGACTTTCATTCCAAAAATTTAAAG AAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0220400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGCTGAAGCAGCTAGAAGGCCTTCTCGGTGGTCTTGACCAGTTTCCTCACCCAAAGGTGGAGCTTGAGCAGTATCC AACAGGACCCCACATCGCTTCTCGAATGCTTTTCACTGCAGAAAATTCTTTTGGGGATGTGAGCGACAAAGTAGTGGCTG ACTTTGGATGCGGTTGCGGTACTTTAGGCATTGCAGCTGCTCTTCTGGGTGCAGAACATGTAGTCAGCATTGACATTGAT CCAGAATCTCTTGAAATAGCAACTCTTAATGCTGAAGAACTTGAGCTGGACATGGATTTTATTCAGTCTAATCTCTTGGA CTTGGGATGGAGAGGTCCAATAGTTGATACAGTTATAATGAATCCTCCATTTGGAACTCGGAAAAAAGGTGCAGATTTGG ATTTTGTCTCTGTTGCTTTGAAGGTTGCTTCTCAAGCTGTTTATTCTTTGCATAAGACTTCAACAAGAGACCATGTGAAA CGAACAGCCTTAAGGGATTTCGGTGCTAGCAGCGCTGAAGTTCTTTGTGAGCTTCGGTTTGATGTACCAAAACTTTACAA ATTTCACAAGAAGAAAGAGGTAGATATTGCCGTGGATCTCTGGCAATTTGTACCAGCAAGTAATCAAAGCTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0220400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKLKQLEGLLGGLDQFPHPKVELEQYPTGPHIASRMLFTAENSFGDVSDKVVADFGCGCGTLGIAAALLGAEHVVSIDID PESLEIATLNAEELELDMDFIQSNLLDLGWRGPIVDTVIMNPPFGTRKKGADLDFVSVALKVASQAVYSLHKTSTRDHVK RTALRDFGASSAEVLCELRFDVPKLYKFHKKKEVDIAVDLWQFVPASNQS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23290:SF0
1 209 209 2.2E-99 –
PANTHER
PTHR23290
1 209 209 2.2E-99 –
Gene3D
G3DSA:3.40.50.150
1 207 207 3.3E-63 –
SUPERFAMILY
SSF53335
10 196 187 2.5E-31
IPR029063
Pfam
PF05175
48 136 89 2.3E-14
IPR007848
CDD
cd02440
52 124 73 4.08322E-11 –
Coils
Coil
84 104 21 - –
ProSitePatterns
PS00092
118 124 7 -
IPR002052

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0032259
Biological process Methylation The process in which a methyl group is covalently attached to a molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0220400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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