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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0220700 |
| Transcript ID | LotjaGi2g1v0220700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | cationic amino acid transporter 9; TAIR: AT2G20080.1 hypothetical protein; Swiss-Prot: sp|Q84X40|SPER1_ARATH Protein SPEAR1; TrEMBL-Plants: tr|A0A151TIS9|A0A151TIS9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0220700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:67606449..67609147) extracted from Lotus japonicus Gifu genome v1.2.
AATAATCAAAGAAAAATAGATGCAAAGAGGTTAGAGGAGGAGAGATAAAGAGCATAGAATCTAGGCGTATATATATAACT TAAGATTGAAATCTACACACAATCTGATCCAGCGATGCAATTATTCTTATTATTTTGCTAGCTAGAAGAAGCTGCTTAAA AGAGCATTGGATCTCTCTGATTTCCCTGGAAGTGGAAGCAGTTCTTCCGGGATTTGCAAAAACCTCAAGAAAGATTTAGA GAGAGAAGGAGCAAAATGGGTAGCAGTTATTTTGGAGAGCCAAACATGGGAAATAATGAAAGAGTGAGTGGATCTTCTTC AAGGAAAGGGAAGAAGAACAATCAAGACAAGCCAAAGCAACCGCAAAGAGGACTTGGTGTTGCTCAATTGGAGAAAATCA GGTTACATGGTCAAATGGCCTATGGCTTTCATCCTCTTCATCAGGGTTCTTTTCCTTCAAATCTTAACAATGTAAATCTC TCTACTTCTCTAGCTCCCTTTGATCAAATTAAGTGCATCTTTGGAAACCCCTTACCGTTTCTAAAGTCAAAATCAATTCG AGATAGAAGTTTATGTTGGTAGCTTCTAGATGTCTAAATTGATTTTGCGAATAAAAGAGACTGATCTTGTAACCTAGCAG TTTTCTTTTTTAATTGGATTTGTGGAATTGGAGGGAGTTTTAATTGATTTTTGATGATCATGCAGGAAGATCCAAGAGTG CAAACACCATATTCATCCTCAATACCATCATCATCATTTTCTTACTCATCATCATCCACATCATACTCAGCTTCACATGG CTTCCAACCCAACCTTGTGGTATGTGTAATTTTGGCCTTTTCTTTATTACAAATTGGTTGAACACTTTTACTGATATACT TTTTTTCTTTTTAACTTGTACCATATTCAACTTATTCGTTTTCATTCTTTTGTGATGAGTGAGCATGTTTCACTCATATT TTCATAATTGTGATTTGTCAAGACTTAGTAATTATAACTAGAAAAAAAATATATATCTTCAATTGTCCCCAAAGCAATCA AGGTGACTGTTTTTTCAACCCTTGTAAAAATTATTTGTGGTAATGATATGACATGATAATTATCTTCTTATCTTGAAAAG TTTATGTAGCATATATATACATAGATAACCCTAGAAACCTTCTTGTTGAACCTGATTGAACTAACTCTCGTCTATGCTGG GTTCAATTTGAAATTTCAAGGATAGTAATATATAACCTAGCTAGGTAATAAGGATAGTGCAAAATTATTAAAATTGATTA GAAGAGCCAGTACTACGTACTATCATTGAGAACACAATAATTGGCTAATTAATTCTCACATCCGATTTTGCAAAAACAAA TAATTTAACAAGTTCATATGGAGTTTGGAAATGTATATGGTAAAGTTATATTTGGAGGATCCTGAATTTCAAAACACTGT TTGCTTTTGCAGATTGGCCTACCTGAATACGAGAGATCAAGCATGGGATATGGAGTTTCTCAGCCAACTAGTACAACAAG GTACTTCAAATTTCCAGCCCATGATCATCATTGCATGTTTGGAAATCCTTCTACAATTGATTTTAAAGTTAATTCTGGAG ATAAGTTTATGTGAGTAGTTTCTGGGTTACAGAATTGATTCTGACGAAAGAGAAACTGCTCCTATAATCATTTGTCATCA ATTAATGCAAAGACCAACATGTGTTAATTAACATATGTCGGATATTTTGTTCTTCTGATCTTGTTTAATGATTTTGCCAT GATGAATTTCTTGCTGATATATTATTACTTATTTAAATCCAGATGGGAACAGGCCAATACCATTGCTCAACCCAACACAA CTAGACCCTTACTTAACCTATATGTAAGCACTCTTTTTTCACATGAACAGTCTCTCATTGGATATTTCACGCCTTAATCT ATATGTGAATTCAAAATGACCTTGATTATGTTTTCGATCATAATTAGGATTCAACACACATAAAGACCACTGAATACAGA AGTGGTTCCGCAGGCTCAAGCAGTCATTACTCTGAATCAAGTGACACTCAAGAGCCAGATTTGGAGCTAAGATTATCTCT TTGATCTTTCCATTTGGAAGAGTGGTGTGATTCTTGTAACTGCAATGCTTTTATTTACAAGTGAGAATTGCAATAGAACA ATGAACAAGCAGCCAAGGTGTTTGTTTGTTTTAAAGTTTCATCCGGAGATCACAACTCTTGTGTAATGGAAGATAGATTA TTGACACTTTGCATACAAAATAATGCAAATTAAACTTTCTCCTTTAACGTAAATTGTATCAAAGAAAAGAGGAGTTATTG TTATCTCTAGTCCTTAATTTTTGTTAGGTTTTCATTAGTTAGTATATGCAGATTCTTTCATGAATTTATCCAATCATTTT TTCTTTTAAACTGCTTGGAGTTGAAGAAGTTGATACTTTCATGAATAAACTAAATATTCAGAACTGAGGTGGTAATAGTA CTTCATTTTATTTTCCTCAACCAAATTTGATGCATGTAATAATAAAGGTAATCCAAAGTTATTGTTTCATTTTTAGGCTT TGTCGTCCAAGGTAGGTTGGGTACTTTTCCTAAGTTGTTGAGTTTGGTTTATAATTATATCTAATAAAGCTTGTAATTAT CATTGACGTTTATAATCATGTCTCATTTTTCGATCTTGAATTTGTTGAAAATGATAAGG
CDS sequence (LotjaGi2g1v0220700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGCAGTTATTTTGGAGAGCCAAACATGGGAAATAATGAAAGAGTGAGTGGATCTTCTTCAAGGAAAGGGAAGAA GAACAATCAAGACAAGCCAAAGCAACCGCAAAGAGGACTTGGTGTTGCTCAATTGGAGAAAATCAGGTTACATGGTCAAA TGGCCTATGGCTTTCATCCTCTTCATCAGGGTTCTTTTCCTTCAAATCTTAACAATGAAGATCCAAGAGTGCAAACACCA TATTCATCCTCAATACCATCATCATCATTTTCTTACTCATCATCATCCACATCATACTCAGCTTCACATGGCTTCCAACC CAACCTTGTGATTGGCCTACCTGAATACGAGAGATCAAGCATGGGATATGGAGTTTCTCAGCCAACTAGTACAACAAGAT GGGAACAGGCCAATACCATTGCTCAACCCAACACAACTAGACCCTTACTTAACCTATATGATTCAACACACATAAAGACC ACTGAATACAGAAGTGGTTCCGCAGGCTCAAGCAGTCATTACTCTGAATCAAGTGACACTCAAGAGCCAGATTTGGAGCT AAGATTATCTCTTTGA
Protein sequence (LotjaGi2g1v0220700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSSYFGEPNMGNNERVSGSSSRKGKKNNQDKPKQPQRGLGVAQLEKIRLHGQMAYGFHPLHQGSFPSNLNNEDPRVQTP YSSSIPSSSFSYSSSSTSYSASHGFQPNLVIGLPEYERSSMGYGVSQPTSTTRWEQANTIAQPNTTRPLLNLYDSTHIKT TEYRSGSAGSSSHYSESSDTQEPDLELRLSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| MobiDBLite | 1 | 46 | 46 | - | – | |
| PANTHER | 2 | 191 | 190 | 4.2E-70 | – | |
| PANTHER | 2 | 191 | 190 | 4.2E-70 | ||
| MobiDBLite | 65 | 97 | 33 | - | – | |
| MobiDBLite | 162 | 178 | 17 | - | – | |
| MobiDBLite | 162 | 191 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi2g1v0220700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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