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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR040356
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 5 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.683s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi2g1v0220700.1
n.a. cationic amino acid transporter 9; TAIR: AT2G20080.1 hypothetical protein; Swiss-Prot: sp|Q84X40|SPER1_ARATH Protein SPEAR1; TrEMBL-Plants: tr|A0A151TIS9|A0A151TIS9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0220700 LjG1.1_chr2 67606449 67609147 +
2 domain predictions
1 GO term
LotjaGi3g1v0079800.1
n.a. Transposon Ty2-B Gag-Pol polyprotein; TAIR: AT4G27330.1 sporocyteless (SPL); Swiss-Prot: sp|O81836|SPL_ARATH Protein SPOROCYTELESS; TrEMBL-Plants: tr|A0A0L9UMC9|A0A0L9UMC9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0079800 LjG1.1_chr3 8837567 8839417 +
2 domain predictions
1 GO term
LotjaGi3g1v0154300.1
n.a. Actin cytoskeleton-regulatory complex protein pan1, putative isoform 1; TAIR: AT2G34010.2 verprolin; Swiss-Prot: sp|F4IGU3|SPER2_ARATH Protein SPEAR2; TrEMBL-Plants: tr|K7LWF8|K7LWF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0154300 LjG1.1_chr3 20957662 20960327 +
2 domain predictions
1 GO term
LotjaGi3g1v0154300.2
n.a. Actin cytoskeleton-regulatory complex protein pan1, putative isoform 1; TAIR: AT2G34010.2 verprolin; Swiss-Prot: sp|F4IGU3|SPER2_ARATH Protein SPEAR2; TrEMBL-Plants: tr|K7LWF8|K7LWF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0154300 LjG1.1_chr3 20957662 20960382 +
2 domain predictions
1 GO term
LotjaGi6g1v0325600.1
n.a. Actin cytoskeleton-regulatory complex protein pan1, putative isoform 1; TAIR: AT1G29010.1 verprolin; Swiss-Prot: sp|Q9SHQ9|SPER4_ARATH Protein SPEAR4; TrEMBL-Plants: tr|A0A151QUV3|A0A151QUV3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0325600 LjG1.1_chr6 64093232 64096050 +
2 domain predictions
1 GO term