Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0221500 |
| Transcript ID | LotjaGi2g1v0221500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ninja-family protein; TAIR: AT4G28910.1 Putative interactor of JAZ; Swiss-Prot: sp|Q53HY2|NINJA_TOBAC Ninja-family protein mc410; TrEMBL-Plants: tr|I3SU91|I3SU91_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0221500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:67677254..67680780) extracted from Lotus japonicus Gifu genome v1.2.
TTTTCTTATTTGCTCATATCCTAGTCTCAATCTTCCACTGATCTCTGCAGAGAGATGACTTGACCTAGGGTTTGATCATT CCTTCCTCTTCCCAAATTCAGGTATCTCCTTCTCTTACCTATTGATCTTCATCACTCTCCAATCACTGCCATCTGAAACC CTAATTTTGTTTTTTTATTTGATATATCTTTTACATCATGTTTTCCCCCAATCATGCACCTCACAGATTAAGCCCTGAAA CTCCGATCGGAGCTTTACCCATTTTTTCTTAATCTTCAAGCAACGAATTGAGATAGGAAAGTTTCAAAATTGATGAGAAA TAGAGCATGCTCATGTTGCTACTGATTTGCTCTATCTTGTAGCTTTGGGCAACTCCAGACTGTGGTGGCAGTATAAAGTT GTTCAAATCAGTTGAGAGAGGGGGTGGGGAGATCTGGATCAGGAGTGAGGCCAGGTTTTGACCTGATTCACAGTTTCACA CCCTAGCACCTTATAAATTTGCTGAATTTGTTGTTTTTCTGAGTCTATTTTGGTTATTTACTAGTTCTTCTAATCTGTAG TAAATTTCATAGTCTGTTATGTTATGTTCAATAAGGAAATAATTTTTTATTGGGTTTTGGTGGATTCTGGATTGTTGTTG TTATTATTATTATTATTTTAAGCAGACCCTGGATGGTGTATGATGCTCCAGGGAAGCCTTCAGCAACTGCAGTATTACTG CAGCCACAATTTCAAAACCATAATTTATTTTTAATGGAATCTGACCTGTGACCTGTCCTTGGGTATAGAGATTGCAACGA GTTATTCGTTTTTAATTTTTATGTCTGATATTTTAGATGAAAACCATGATGATGTTAATATTTTCCTTATATGAATCTGT GCTATACAATTGATATGGCTTGCCTTGCCTTGTTTGACATCAAACTGATTCACTGAATGCAGATTTTTGTGGATGGTTAC TTATGGTAAATAGGTGGACTTATATAGCGAGTTGTATAGAGGATACGGCGATCAAGCTGTTTGATTTGTTTTGAATTTTG ATAGTGGTCATTTTATTACAACATGGAAGATGATGGTGGGCTTGAGCTCAGTTTGGGTTTATCTTGTGGTAGCTCATCAG TCAAGCCGAAAAATAAGAATGGTAGCTCCTTGGATCTTAGAGCAGAAGAAGTTGGTAAAGGGAACAAGATGGCTGATGAC TTTAAGAGCATATTTGATACCGATAAGCCAGATTCAATCACTGGCACTCGAAGAAATGAGTCTTCAAAGCCTGAGGAGAA TTTCTTTAGTGACCTTTCAAAGGTTAAAGAAGATAATACCTCTTTGAATTTAAATGCGAGAGGATTTCTGGGTGCAAACA GTAGTAGACCTATTGAAATCGAGGAAGATAAACGGTTGGAAACAGTAAGTAAGCGGAAAATATCTTTCGATGAGATACGT AATCAAAAGAAGCATGACAGCGATGTTCATCATACTGATTTACATGACAGGACAAGAACATCTCACATTTCTGTAACAGA AGATGGCTCAACTGCAGAAAATGAAGATGTGGCTGATTCTGAAGCTGAGAACTCCACCTCCAGGCCTCTCTCACACCATA GTGATGGTTCCAAAGGATTCATCAGAGTTGGTGCTACTAGTGATGCTCCAAAAGAGGTTCGTGGAGTTGCTGACTCCAAT GCCACTGATTTTAATGGGCAGAAGAGATTTATTGGGTCATCAGAAAAAGATTTTAAACATGCAAACATGACTTATGGTGC TTCCTTCTCTGTTCAACCTATTAATATGAATATGCCTTACCCTTCTCCAGTTAAAGAGTCCAACTCTGTCGGGGCACCAA GCCCTCAAATTCCTGGAATGATGCATATGATGTCTACAGCTACTGGTGACCGCACAGGAGCCCAATCTGTGAATAATGGG AACTTGCCAGCTATGTTTGGATATCCTCCTGTTCAGCTTCCCATGTTGGATAAGGATAGCTCATGGGGTTTGGGTTCTCG CCCTCAACAGTTACACCCTTCCTTTGTTGGGAGAGGTCCAACTAACCCAGGTAATTGTTATTTGGATGGAAGATATTCTT AAATAATCAATTTTCCTTGCTTGAACTTCCAAGATCTGTATGTCAGATTGATAAACTGTTCAAATGTCTTGGATTGTGTA TACATTATACTATTCATCATAGCCACACCCACAAGATTGATAAATTGAACCAAATATTCTTAGACGGATGGAAGACTTGC ATATCAATTTGAGTTGGAGCCATCTGTGTCAGAAAAGTTTATGTGTTACAAAAGTTTGTTTTTCAGTTCGATACATTATT GTAATAATTACAATGAACTCTATTTATAGTATGATGCTTACTGAATTTTGATCGGGAATGACATTATGCCGTTGTTATGT GGTTACAGCTTCTCTACACATGATGTCAAACAATATATCTGAGGCTGTGCCATATGAGGGAAGGCCGCTAGAACGACTCA AAGGAGATGGAAAACAGCGCGTCACTGAAGATGGCTCCTCTTCACAACATGAAGACGTAAAAGGAAGTAGCACCAACCTC AGGGCCAAAGATGTATCAGACCAGCCAAAAGGAGAAGGCTCCGCTGTTGATTTTTCAAATATTAAGCCAGGTCTTGCTGC AGATGTGAAATTTGGCGGAGGTGGTTCCTATCCAAATCTGCCTTGGGTATCCACCTCAGGTTCAGGCCCAAATGGAAGGA CAATATCTGGTGTTACTTACAGATACAGCTCTAACCAAATCAGGATAGTCTGTGCATGCCATGGGACCCACCTGACCCCT GAGGAGTTTGTTCGCCATGCAAGTGATGACAAAGCCAATCAAGAGGGAAATGCAGTTTTGGGGTCGGTACCTAATGGTAA TCCTGCTGCCTCTTCTCACAGCTAGATTCTTGTACCATTTTAAGTTGTACTTTACTATTATAGTTCTCAACAAAAGATTC AGGCAAAGGGCTTTAATTTTTCTTTAGATGAATGAGATTTGTACCATTTTTCTGTGTACAATTTAATGACCTATTTTGCT ATTCCTCTTTAATTACTTGTAGCAGCTGCAATAGAGATTGCAGTTGTATTTGTATGTAATGATGGACCATCTTCATCTGT TTTCAAATAGTAATTAGAAACCTGCTTTTATTGCTAGCAGTCACAGTCACAGTCTTTCCCTTTTTAGTGTTAGGATCAAT AGTAATGCTGTTTTCAGACTGCTAAGGGTGTGTTATGCATCAAATGGCAAGTGCTTATAGTTATTTATTTTTTTGTAAAC CAAACAAGCCTTTAGAGACTTAAGCTCAACAAGTACAACATGAACTATCCGTAATCACAGTTTGCTGATGCACATACTTA TTACAAAATTGTTTCCTAAGATACACAATCTTGAACTCAGGCCAACCTTTTACAAGATTCAGAGCAAAATTGTGACTACA AGTATAGCTGGATGAGTTCATCACTAACAACAGATGGAGTAAGAACACCTAAATCTGTGAAAAGCAGAGTCAGATATTGA GGTTTAT
CDS sequence (LotjaGi2g1v0221500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATGATGGTGGGCTTGAGCTCAGTTTGGGTTTATCTTGTGGTAGCTCATCAGTCAAGCCGAAAAATAAGAATGG TAGCTCCTTGGATCTTAGAGCAGAAGAAGTTGGTAAAGGGAACAAGATGGCTGATGACTTTAAGAGCATATTTGATACCG ATAAGCCAGATTCAATCACTGGCACTCGAAGAAATGAGTCTTCAAAGCCTGAGGAGAATTTCTTTAGTGACCTTTCAAAG GTTAAAGAAGATAATACCTCTTTGAATTTAAATGCGAGAGGATTTCTGGGTGCAAACAGTAGTAGACCTATTGAAATCGA GGAAGATAAACGGTTGGAAACAGTAAGTAAGCGGAAAATATCTTTCGATGAGATACGTAATCAAAAGAAGCATGACAGCG ATGTTCATCATACTGATTTACATGACAGGACAAGAACATCTCACATTTCTGTAACAGAAGATGGCTCAACTGCAGAAAAT GAAGATGTGGCTGATTCTGAAGCTGAGAACTCCACCTCCAGGCCTCTCTCACACCATAGTGATGGTTCCAAAGGATTCAT CAGAGTTGGTGCTACTAGTGATGCTCCAAAAGAGGTTCGTGGAGTTGCTGACTCCAATGCCACTGATTTTAATGGGCAGA AGAGATTTATTGGGTCATCAGAAAAAGATTTTAAACATGCAAACATGACTTATGGTGCTTCCTTCTCTGTTCAACCTATT AATATGAATATGCCTTACCCTTCTCCAGTTAAAGAGTCCAACTCTGTCGGGGCACCAAGCCCTCAAATTCCTGGAATGAT GCATATGATGTCTACAGCTACTGGTGACCGCACAGGAGCCCAATCTGTGAATAATGGGAACTTGCCAGCTATGTTTGGAT ATCCTCCTGTTCAGCTTCCCATGTTGGATAAGGATAGCTCATGGGGTTTGGGTTCTCGCCCTCAACAGTTACACCCTTCC TTTGTTGGGAGAGGTCCAACTAACCCAGCTTCTCTACACATGATGTCAAACAATATATCTGAGGCTGTGCCATATGAGGG AAGGCCGCTAGAACGACTCAAAGGAGATGGAAAACAGCGCGTCACTGAAGATGGCTCCTCTTCACAACATGAAGACGTAA AAGGAAGTAGCACCAACCTCAGGGCCAAAGATGTATCAGACCAGCCAAAAGGAGAAGGCTCCGCTGTTGATTTTTCAAAT ATTAAGCCAGGTCTTGCTGCAGATGTGAAATTTGGCGGAGGTGGTTCCTATCCAAATCTGCCTTGGGTATCCACCTCAGG TTCAGGCCCAAATGGAAGGACAATATCTGGTGTTACTTACAGATACAGCTCTAACCAAATCAGGATAGTCTGTGCATGCC ATGGGACCCACCTGACCCCTGAGGAGTTTGTTCGCCATGCAAGTGATGACAAAGCCAATCAAGAGGGAAATGCAGTTTTG GGGTCGGTACCTAATGGTAATCCTGCTGCCTCTTCTCACAGCTAG
Protein sequence (LotjaGi2g1v0221500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDDGGLELSLGLSCGSSSVKPKNKNGSSLDLRAEEVGKGNKMADDFKSIFDTDKPDSITGTRRNESSKPEENFFSDLSK VKEDNTSLNLNARGFLGANSSRPIEIEEDKRLETVSKRKISFDEIRNQKKHDSDVHHTDLHDRTRTSHISVTEDGSTAEN EDVADSEAENSTSRPLSHHSDGSKGFIRVGATSDAPKEVRGVADSNATDFNGQKRFIGSSEKDFKHANMTYGASFSVQPI NMNMPYPSPVKESNSVGAPSPQIPGMMHMMSTATGDRTGAQSVNNGNLPAMFGYPPVQLPMLDKDSSWGLGSRPQQLHPS FVGRGPTNPASLHMMSNNISEAVPYEGRPLERLKGDGKQRVTEDGSSSQHEDVKGSSTNLRAKDVSDQPKGEGSAVDFSN IKPGLAADVKFGGGGSYPNLPWVSTSGSGPNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHASDDKANQEGNAVL GSVPNGNPAASSHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 2 | 494 | 493 | 1.5E-151 | – | |
| PANTHER | 2 | 494 | 493 | 1.5E-151 | ||
| MobiDBLite | 12 | 26 | 15 | - | – | |
| MobiDBLite | 45 | 79 | 35 | - | – | |
| MobiDBLite | 45 | 80 | 36 | - | – | |
| MobiDBLite | 128 | 188 | 61 | - | – | |
| MobiDBLite | 128 | 149 | 22 | - | – | |
| MobiDBLite | 308 | 333 | 26 | - | – | |
| MobiDBLite | 351 | 370 | 20 | - | – | |
| MobiDBLite | 351 | 399 | 49 | - | – | |
| Pfam | 420 | 467 | 48 | 9.7E-7 | ||
| MobiDBLite | 469 | 494 | 26 | - | – | |
| MobiDBLite | 478 | 494 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi2g1v0221500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…