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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0223400 |
| Transcript ID | LotjaGi2g1v0223400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein PP2; TAIR: AT1G80110.1 phloem protein 2-B11; Swiss-Prot: sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12; TrEMBL-Plants: tr|A0A0B2PZN8|A0A0B2PZN8_GLYSO F-box protein PP2-B10; Found in the gene: LotjaGi2g1v0223400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:67946744..67948545) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGAAGAGAGTCATCTATGGAATTGCCGGAAGAATGCATCTCTGACATACTGTGTCGCACTACTCCATTGGATGTCGC TAGGATCTCTGTCGTTTCTAAGATCTTCTGCTCTGCCGCTGATTCTGACACTATTTGGGATCATTTTCTCCCTTCTGATT ATCGTTCCATCATTTCCCAATCGCTTTCCGTGGCCAACGCTCCTTCAAAGAAAGCCATCTATCTCGCTCTCTCTGATCGC CCTATCATCATCGACGAGGGGAAAAGGGTAAATACTTTCACCTATCGAATACGATCATTTCTTATATTAGGGCTTTATAG AGTATTAATTAACATTTGGGTGTTTCTTAATTGTCTGAAATGCAGAGCTTTCAATTAGACAGAAAGAGTGGGAAGAAATG TTACATGCTTTCTGCCAGAGCTCTCAACATTTCTAACGGTGAAGATGAACGTTACTGCCGCTGGGTTACCCTCCCAGAAT CTAGGTCAGATCTTCAATATTGAATTTTCTTCATTTTATTCTAGGTTTTTTTTTGGAGTGCATTTTATTTTATTTTTATT AATCAATGATCAGACTTGTCAAACAAAAGTCATGATGCTAAATAATCTCATCTTTAGTGGGTCAATAATGTATATGTAAA AAGAAAAGTAAAAGATGGATGAATTTTATTTTCAACTCATTTATTTTAAACATAAAGTCTACTTATGTTTATGGTACACA TTTATGTATGATATATGATTGCACAGATGATGTCGCCTACTTCCATATTGCATCTCAAATCAATGCTCGTAGGATTCCAT AGGGTAGCTTGGGGGGTGTTGTTTTGGTTTTAGGGGCTTCGAGGGTTGTTGGTTCATGCTTTCGGTTTTGTCTTTGTCTT TGAGTGGGGGGGGGGGGTTGGTTCTTTCTTGCTACTCTTATGGGTTGATTGTTGTTCGTTTCGGGGTTTTTGCCTCTAGT GCTGGATTTTGATCCCTTTTGAGGAAGGATGTATTTCTATGTCATTTTTCTATCAGTATGTTTTTTTTTGTTGAAAATAA GGTCTTCTTATGATAAGATTATTTAAATTTTGAGTAAGGTACATTTTCATTTAATTATGAATTATATTTTGAATGTTTGC CTTTTTGTACCACATGTCTTTCTTGTAGATATATTCCTTATGTAAAAATGTTGTCAACCTCTATATTGAACAGGTTCGAA GAAGTTCCCATGCTTAAAGATCCATTATGGTTTGCTATTTCTGGGAAGATAAATACTGTTGATTTGTCCTCAAGCACTCA ATATGCAGTTTTTCTTGTTTATAAGTTGGTCACTACTCATGGCTCATACTATGAACCTGTGTTGTTATTGATGCGCATTT TAGGAGGTCGTGTCCGTACTAAGAAGGCTTGTTTGGCCATGAGGTTAAAAGAGAATTCTATGAACAGTGTACCAGAATGT CCAAATATGAGAAGTGATGGTTTGTTGGAGATTGAGATGGGAGAATTCTTCAACTTAGGTCTAGAAGATGGTGAAGTGGA GATGAATGTTATGATAACACAGATGTTTTCATGGAATGGCAGTTTCTATCTTGAAGGAATAGAAGTTAGGCCTAAGATAT CTCGTCCCATAAGAAATGGTAGACAGGCCTAGCAAATATGTTAAGGGTATTGCAACTTTTGGGGTAGAAAATAAACATAT ACAGCATGGTTCCCAAATAAATTTCTTTTTTATTTCTTAGTTTTTGACAAAATAAACTTATTGTCTGCTTGTTCGTTCTT TATTCCCTTTGCTTGTTTAATCAGTCAATCTCGATTTGAAAA
CDS sequence (LotjaGi2g1v0223400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATTGCCGGAAGAATGCATCTCTGACATACTGTGTCGCACTACTCCATTGGATGTCGCTAGGATCTCTGTCGTTTC TAAGATCTTCTGCTCTGCCGCTGATTCTGACACTATTTGGGATCATTTTCTCCCTTCTGATTATCGTTCCATCATTTCCC AATCGCTTTCCGTGGCCAACGCTCCTTCAAAGAAAGCCATCTATCTCGCTCTCTCTGATCGCCCTATCATCATCGACGAG GGGAAAAGGAGCTTTCAATTAGACAGAAAGAGTGGGAAGAAATGTTACATGCTTTCTGCCAGAGCTCTCAACATTTCTAA CGGTGAAGATGAACGTTACTGCCGCTGGGTTACCCTCCCAGAATCTAGGTTCGAAGAAGTTCCCATGCTTAAAGATCCAT TATGGTTTGCTATTTCTGGGAAGATAAATACTGTTGATTTGTCCTCAAGCACTCAATATGCAGTTTTTCTTGTTTATAAG TTGGTCACTACTCATGGCTCATACTATGAACCTGTGTTGTTATTGATGCGCATTTTAGGAGGTCGTGTCCGTACTAAGAA GGCTTGTTTGGCCATGAGGTTAAAAGAGAATTCTATGAACAGTGTACCAGAATGTCCAAATATGAGAAGTGATGGTTTGT TGGAGATTGAGATGGGAGAATTCTTCAACTTAGGTCTAGAAGATGGTGAAGTGGAGATGAATGTTATGATAACACAGATG TTTTCATGGAATGGCAGTTTCTATCTTGAAGGAATAGAAGTTAGGCCTAAGATATCTCGTCCCATAAGAAATGGTAGACA GGCCTAG
Protein sequence (LotjaGi2g1v0223400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELPEECISDILCRTTPLDVARISVVSKIFCSAADSDTIWDHFLPSDYRSIISQSLSVANAPSKKAIYLALSDRPIIIDE GKRSFQLDRKSGKKCYMLSARALNISNGEDERYCRWVTLPESRFEEVPMLKDPLWFAISGKINTVDLSSSTQYAVFLVYK LVTTHGSYYEPVLLLMRILGGRVRTKKACLAMRLKENSMNSVPECPNMRSDGLLEIEMGEFFNLGLEDGEVEMNVMITQM FSWNGSFYLEGIEVRPKISRPIRNGRQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 43 | 43 | 10.16 | ||
| PANTHER | 2 | 256 | 255 | 7.6E-96 | – | |
| PANTHER | 2 | 256 | 255 | 7.6E-96 | – | |
| Pfam | 2 | 43 | 42 | 1.6E-5 | ||
| SMART | 3 | 43 | 41 | 2.0E-4 | ||
| SUPERFAMILY | 3 | 100 | 98 | 2.94E-11 | ||
| Pfam | 93 | 256 | 164 | 3.7E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0223400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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