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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0223700 |
Transcript ID | LotjaGi2g1v0223700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein PP2; TAIR: AT1G80110.1 phloem protein 2-B11; Swiss-Prot: sp|Q949S5|P2B11_ARATH F-box protein PP2-B11; TrEMBL-Plants: tr|G8A220|G8A220_MEDTR Phloem protein 2-B11; Found in the gene: LotjaGi2g1v0223700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:67982481..67983740) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAAGAAAGAAAAAAAGAGAGTAAGATATGGAATTGCCGGAAGAATGCATCGCTGACATACTGTGCCGTACTACTCCA GTAGATGTCGCCAGGAACTCCGTCGTGTCTAAGATCTTCTGCTCCGCCGCTGAATCTGACACTATTTGGAATCATTTTCT CCATTCCGATTATCATTCCATCGTTCCCCAGTCTCTTTCCTTGGCCAACGCTCCTTCAAAGAAAGCCCTTTATCTCGCTC TCTCAGATCACCCTATCATCATCGACCAGGGGAAAAAGGTAAATACTCTCATCAATCTAATATGATCATTTCTCAGATTA GGGCTTCACAAAGTATTAATTAACCTTTGGTTGTTTTCTAATTGTCTGAAATGCAGAGCTTTCAATTGGACAGGAAGAGT GGGAAGAAATGTTACATGCTCTCTGCTAGAGCTCTCCACATTTCTAGGGGTGACGATGAACGTTACTGCAGCTGGGTCAC CCTCCCAGAGTCTAGGTCAGTACTTCAACATTGATTTTTGTTCGTTTTATTCTAGTTTTTTTAGTGAAATTTATTTTACA AAAGTCACGATGTTAAATAATCTCATCTTTAGTGGTATATTTATAAGAATTAAAGTAAAAGATCGATAAATTTTATTTTC AACTCATTTATGTTAAACATAAATTCTACTTATGATAAGATTATTTAAGTTTTGAGTAAGGTGCATTCCCATTTAACTAG GAGTTATGTTGTGAATATTTGTCTATTTATACCACATGCCATTCTTGTACAAATATTTCTTATATACAAATGTTGCCAAC CTATATATTGAACAGGTTTGAAGAAGTTGCCCAGCTTAAACTTGGGTTCTGGTATGGTATTTGTGGGAAGATAAATATCG TTGATTTGTCCTCAAACACTCAGTATGCAGCTTTTCTTGTTTTTAAGTTGATCACTGACGATCGATATTTCCAAAACCCT GTGATGTTCTCAATTGGCATTTTTGGAGGGCCTATGCGTACCAAGGTGGTTTGGATGGACATTGAGTTAGAAAAGTTTAT TGACAAGGTATTAGAATATCCCAATGTGAGAAGTGATGGCTTGTGGGAGATTGAGATGGGGCAGTTCTTCAATTCAGGCC TAGACGATGGTGAAGGGGAGATGACAGTTATGATGCCATATGATTATGTTTTGGGGGGCAGTTTCTATCTTGAAGGAATA GAAGTTAGGCCTAAGATATAGTAGTAGGACTAGCAAATATGTTAACTTATTATAACTTTT
CDS sequence (LotjaGi2g1v0223700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATTGCCGGAAGAATGCATCGCTGACATACTGTGCCGTACTACTCCAGTAGATGTCGCCAGGAACTCCGTCGTGTC TAAGATCTTCTGCTCCGCCGCTGAATCTGACACTATTTGGAATCATTTTCTCCATTCCGATTATCATTCCATCGTTCCCC AGTCTCTTTCCTTGGCCAACGCTCCTTCAAAGAAAGCCCTTTATCTCGCTCTCTCAGATCACCCTATCATCATCGACCAG GGGAAAAAGAGCTTTCAATTGGACAGGAAGAGTGGGAAGAAATGTTACATGCTCTCTGCTAGAGCTCTCCACATTTCTAG GGGTGACGATGAACGTTACTGCAGCTGGGTCACCCTCCCAGAGTCTAGGTTTGAAGAAGTTGCCCAGCTTAAACTTGGGT TCTGGTATGGTATTTGTGGGAAGATAAATATCGTTGATTTGTCCTCAAACACTCAGTATGCAGCTTTTCTTGTTTTTAAG TTGATCACTGACGATCGATATTTCCAAAACCCTGTGATGTTCTCAATTGGCATTTTTGGAGGGCCTATGCGTACCAAGGT GGTTTGGATGGACATTGAGTTAGAAAAGTTTATTGACAAGGTATTAGAATATCCCAATGTGAGAAGTGATGGCTTGTGGG AGATTGAGATGGGGCAGTTCTTCAATTCAGGCCTAGACGATGGTGAAGGGGAGATGACAGTTATGATGCCATATGATTAT GTTTTGGGGGGCAGTTTCTATCTTGAAGGAATAGAAGTTAGGCCTAAGATATAG
Protein sequence (LotjaGi2g1v0223700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELPEECIADILCRTTPVDVARNSVVSKIFCSAAESDTIWNHFLHSDYHSIVPQSLSLANAPSKKALYLALSDHPIIIDQ GKKSFQLDRKSGKKCYMLSARALHISRGDDERYCSWVTLPESRFEEVAQLKLGFWYGICGKINIVDLSSNTQYAAFLVFK LITDDRYFQNPVMFSIGIFGGPMRTKVVWMDIELEKFIDKVLEYPNVRSDGLWEIEMGQFFNSGLDDGEGEMTVMMPYDY VLGGSFYLEGIEVRPKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 43 | 43 | 9.18 | ||
PANTHER | 2 | 255 | 254 | 2.9E-94 | – | |
PANTHER | 2 | 255 | 254 | 2.9E-94 | – | |
SUPERFAMILY | 3 | 100 | 98 | 6.93E-11 | ||
Pfam | 93 | 255 | 163 | 2.4E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0223700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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