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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0224100 |
Transcript ID | LotjaGi2g1v0224100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein PP2; TAIR: AT1G80110.1 phloem protein 2-B11; Swiss-Prot: sp|Q949S5|P2B11_ARATH F-box protein PP2-B11; TrEMBL-Plants: tr|A0A0B2PZN8|A0A0B2PZN8_GLYSO F-box protein PP2-B10; Found in the gene: LotjaGi2g1v0224100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68030198..68031645) extracted from Lotus japonicus Gifu genome v1.2.
GATAGATTGAGACACACAATTAAGGCAATTCACAACAATTATCGAAGAAGGGTAAGAAAGAAAGGAAAAGAGAAAGTGAG ATATGGAACTGCCGAAAGAATGCATTGCTGACATATTGGGCCGCACTACTCCATTGGATGTCGCCAGGAACTCCATCGTT TCTAAGATCTTCTGCTCCGCCGCTGATTCTGACTCTATTTGGAATAATTTTCTCCCTTCTGATTTTCATTCGATCATTTC CCAGTCTCCTTTCTTAGCCAACGCTCCAAAGAAAACCATTTATCTCGCTCTCTCAGATCACCCTATCATCATCGATCAGG GAAAAAAGGTAAATAATCTCATCAATCTAATATGATCATTTCTTCAATTAGGGCTTTACAGAGTATTAATTGACCTTTTG TTGTTTTTTAATTATCTGAAATGCAGAGCTTTCAATTGGACAGGAAGACTGGGAAGAAATGTTACATGCTTGCTGCCAGA GCTCTCCAAATTTCTATGGGTGACGATGAGCGTTACTGCGGCTGGGTCACCCTCCCAGAGTCTAGGTTAGCTCTTTAATA TTGATTTTTCTTCATTTCATTCTAGTTTTGTTTTGCAGCGAATTTTATTTTTATTTTATTGACCAATGATCAGACTTATC AAACAAAAACCACAATGTTAAATAATATCATCTTTAATGTATGAATAATATATTTATAAAAATTATAGTGATCGATGAAT TTTATTTTCAACTCATTTATTTTAAACATAAAGTCTATTTATGATAAGATTATTTAAATTTTGAATAAGGTGCATTGCCA TTTAATTTTGAGTTATATAGTGAGTGTTTGTCTATTCATACCACATGTCATATACAAATGTTCATTATGTACAAATGTTG CCAACTTATATATTGAACAGGTTCGAAGAAGTTGCCAAGCTTGAAGTTGCCAAGCATGAAGTTGGGTTCTGGTATGATAT TTATGGGATGATAAATACAGTTGATTTGTCCCCAAACACTCAATATGCAGCTTTTCTTGTGTTTAAGATGATCACTGATA ATGGAGGCCCTATCCGTGCATTGTTATCGATTGACATTTTTGGGGTCCCTATCCGTAAGAATGCAGTTTGTTTGGACATG AAGCTAAAACTGATCTCTGAGTGTCCAAATGTGAGAAGTGATGGCTTGTTGGAGATTGAGATGGGGGAGTTCTTCAATTC AGGCCTAGAAGATGGTGAAGTGGAGATGAGGGCTATGATATCAAAGTTTTTATTTTGGGAGGGAAGTTTTTATCTTGAAG GAATAGAAGTTAGGCCTAAGCTATAGTAGATAGGACTAGCAAATATGTTAAGGGAATTGCAACTTTTGGGGTAGAAAATA AACATATGTAGCATGGTCCCCAAGTAAATTTCTCTTTAATTTAGTTTTTGACAAAATGAACTTATTGCATGTCTGTTTTT TCTTTATT
CDS sequence (LotjaGi2g1v0224100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTGCCGAAAGAATGCATTGCTGACATATTGGGCCGCACTACTCCATTGGATGTCGCCAGGAACTCCATCGTTTC TAAGATCTTCTGCTCCGCCGCTGATTCTGACTCTATTTGGAATAATTTTCTCCCTTCTGATTTTCATTCGATCATTTCCC AGTCTCCTTTCTTAGCCAACGCTCCAAAGAAAACCATTTATCTCGCTCTCTCAGATCACCCTATCATCATCGATCAGGGA AAAAAGAGCTTTCAATTGGACAGGAAGACTGGGAAGAAATGTTACATGCTTGCTGCCAGAGCTCTCCAAATTTCTATGGG TGACGATGAGCGTTACTGCGGCTGGGTCACCCTCCCAGAGTCTAGGTTCGAAGAAGTTGCCAAGCTTGAAGTTGCCAAGC ATGAAGTTGGGTTCTGGTATGATATTTATGGGATGATAAATACAGTTGATTTGTCCCCAAACACTCAATATGCAGCTTTT CTTGTGTTTAAGATGATCACTGATAATGGAGGCCCTATCCGTGCATTGTTATCGATTGACATTTTTGGGGTCCCTATCCG TAAGAATGCAGTTTGTTTGGACATGAAGCTAAAACTGATCTCTGAGTGTCCAAATGTGAGAAGTGATGGCTTGTTGGAGA TTGAGATGGGGGAGTTCTTCAATTCAGGCCTAGAAGATGGTGAAGTGGAGATGAGGGCTATGATATCAAAGTTTTTATTT TGGGAGGGAAGTTTTTATCTTGAAGGAATAGAAGTTAGGCCTAAGCTATAG
Protein sequence (LotjaGi2g1v0224100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELPKECIADILGRTTPLDVARNSIVSKIFCSAADSDSIWNNFLPSDFHSIISQSPFLANAPKKTIYLALSDHPIIIDQG KKSFQLDRKTGKKCYMLAARALQISMGDDERYCGWVTLPESRFEEVAKLEVAKHEVGFWYDIYGMINTVDLSPNTQYAAF LVFKMITDNGGPIRALLSIDIFGVPIRKNAVCLDMKLKLISECPNVRSDGLLEIEMGEFFNSGLEDGEVEMRAMISKFLF WEGSFYLEGIEVRPKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 43 | 43 | 9.286 | ||
PANTHER | 2 | 254 | 253 | 1.2E-88 | – | |
PANTHER | 2 | 254 | 253 | 1.2E-88 | – | |
SUPERFAMILY | 3 | 97 | 95 | 9.81E-10 | ||
Pfam | 92 | 254 | 163 | 2.3E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0224100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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