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LotjaGi2g1v0226700.2

Overview

Field Value
Gene ID LotjaGi2g1v0226700
Transcript ID LotjaGi2g1v0226700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Arginine--tRNA ligase; TAIR: AT4G26300.1 Arginyl-tRNA synthetase, class Ic; Swiss-Prot: sp|O23247|SYRM_ARATH Arginine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151T2Z4|A0A151T2Z4_CAJCA Arginyl-tRNA synthetase; Found in the gene: LotjaGi2g1v0226700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:68387447..68388751) extracted from Lotus japonicus Gifu genome v1.2.

GTGTTTTTAATTTGTGTTACTGTTTGCAGGTATGCTGACTTGAAGATCAACAGATTAACGAATTACACATTCAACTTCGA TCAGATGCTTAATGACAAGGTGCGTTTACTGTATGCAAATTGAACGTATGCTTCTCTTCTGACAGTGAAGAATACAAAAG ATTTAATAATCTTCTGACAGTGACAAACTAACATTTCTGAAGTTATTATGTCTCACCTTGCTAAGTTTGTCTTGAAACAG GGGAATACTGCTGTTTATTTGCTGTATGCACATGCAAGGATCTGCTCTATTATCAGGAAATCTGGTAAAGACATGGAAGA AGTAAAGAAAGTAAGTTTCTTTTTCATCACTGGATGATAACTTCCAGTTTATCAAATATTTTCTTATTAAGAATGAAATG TTATAGTTTTTTTTTTGTTTCATATGCTTAATTTTACAATATAAAACTCAAAAGTATCGGCTAGGTTTATATTCTACTGA AACAACTTACCAGTTTATCAAATATTTAATTTGTAAGAAAATTTTGATTTAACTATTTTTATTTCATATGCTTAATTTTA CAAGATCCAAGTCAAGAGTTGTGCCTAGATTTATATTCTACCATGGTTGAGCCGCACTCATCTAATATACTTGTGAACTA GTGACTCGGCATTGCATGTTATTTTATATATTATCTGTCAAATATCAACTTGGGCACATTTCTTACCGTCTAATTCATGT TTATTAACCGATGACAGAATGGGATTATAGTGTTGGATCATGAAGATGAGCGTCTACTGGGACTTCATTTGCTACAATTT CCTGAGGTAGGACATGTGAATAGTCTAGGTTGTGCTTGAGCCACTTTTATTTTAAACAAAAGACTTGAGATATAATGATG AAAGTAGGTGGGCATTAAAACATATTATTTTATCCTGCTAACGATACTTAGTCTTAAATGGACTCATGGACTGTTTTATT TTTCAGGTTTTTGAGGAGGCTTGCATCAATTTATTGCCCAATGTGTTATGTGAATACCTCTATAATTTGGCAGAAATCTT CACCAAAAAGTTTTATTCTAATTGTCAGGTATACTTCTGAATTTCTATGCTTTTCCTATTCCTATTTCCTAGTGATGAGG TACTATGGATCAAGACAGCAAGTTTAAATTCAAGCAATGAGCCATCTAATATTCATCTTCTTGTCCTCTGGTAGGTTGTT GGATCACCTGAGGAAACTAGCAGACTCTTGCTTTGTGAAGCAACTGCAATTGTGATGAGAAAATGCTTTGATCTCCTTGG CATTATACCTGTTTACAAGTTGTAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0226700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTAATGACAAGGGGAATACTGCTGTTTATTTGCTGTATGCACATGCAAGGATCTGCTCTATTATCAGGAAATCTGG TAAAGACATGGAAGAAGTAAAGAAAAATGGGATTATAGTGTTGGATCATGAAGATGAGCGTCTACTGGGACTTCATTTGC TACAATTTCCTGAGGTTTTTGAGGAGGCTTGCATCAATTTATTGCCCAATGTGTTATGTGAATACCTCTATAATTTGGCA GAAATCTTCACCAAAAAGTTTTATTCTAATTGTCAGGTTGTTGGATCACCTGAGGAAACTAGCAGACTCTTGCTTTGTGA AGCAACTGCAATTGTGATGAGAAAATGCTTTGATCTCCTTGGCATTATACCTGTTTACAAGTTGTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0226700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLNDKGNTAVYLLYAHARICSIIRKSGKDMEEVKKNGIIVLDHEDERLLGLHLLQFPEVFEEACINLLPNVLCEYLYNLA EIFTKKFYSNCQVVGSPEETSRLLLCEATAIVMRKCFDLLGIIPVYKL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11956:SF6
1 128 128 4.1E-61 –
Gene3D
G3DSA:1.10.730.10
1 128 128 2.2E-36 –
PANTHER
PTHR11956
1 128 128 4.1E-61
IPR001278
SUPERFAMILY
SSF47323
7 127 121 9.81E-34
IPR009080
SMART
SM00836
12 128 117 3.2E-29
IPR008909
Pfam
PF05746
12 127 116 5.9E-32
IPR008909

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0004812
Molecular function Aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
Subterm of
GO:0004814
Molecular function Arginine-tRNA ligase activity Catalysis of the reaction: ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006418
Biological process TRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis.
Subterm of
Part of
GO:0006420
Biological process Arginyl-tRNA aminoacylation The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. The arginyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of an alanine accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0226700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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