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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009080
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We have found 60 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.010s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0316399.1
n.a. PREDICTED: methionyl-tRNA synthetase-like [Glycine max] gi|356536480|ref|XP_003536765.1| chr0 165222791 165223780 +
3 domain predictions
4 GO terms
Lj0g3v0340979.1
n.a. PREDICTED: methionyl-tRNA synthetase-like [Glycine max] gi|356575379|ref|XP_003555819.1| chr0 178626823 178630463 -
3 domain predictions
4 GO terms
Lj0g3v0340979.2
n.a. PREDICTED: methionyl-tRNA synthetase-like [Glycine max] gi|356575379|ref|XP_003555819.1| chr0 178626823 178630463 -
3 domain predictions
4 GO terms
Lj1g3v1856380.1
n.a. PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max] gi|356515262|ref|XP_003526320.1| chr1 22460570 22466639 -
2 domain predictions
4 GO terms
Lj1g3v1856380.2
n.a. PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max] gi|356515262|ref|XP_003526320.1| chr1 22460570 22466639 -
2 domain predictions
4 GO terms
Lj1g3v3137930.1
n.a. PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Glycine max] gi|356497127|ref|XP_003517414.1| chr1 35773209 35777625 +
3 domain predictions
4 GO terms
Lj2g3v0878950.1
n.a. PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502164060|ref|XP_004513035.1| chr2 13512416 13520834 -
3 domain predictions
4 GO terms
Lj2g3v0879000.1
n.a. PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Cicer arietinum] gi|502164143|ref|XP_004513061.1| chr2 13549167 13557342 +
3 domain predictions
4 GO terms
Lj2g3v1472980.1
n.a. PREDICTED: valyl-tRNA synthetase-like [Glycine max] gi|356563701|ref|XP_003550098.1| chr2 23618530 23626746 -
3 domain predictions
4 GO terms
Lj3g3v3032100.1
n.a. PREDICTED: leucine--tRNA ligase, cytoplasmic-like isoform X1 [Cicer arietinum] gi|502147203|ref|XP_004506691.1| chr3 37916340 37922732 +
3 domain predictions
4 GO terms
Lj3g3v3032100.2
n.a. PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Glycine max] gi|356497127|ref|XP_003517414.1| chr3 37916580 37922732 +
3 domain predictions
4 GO terms
Lj3g3v3032100.3
n.a. PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Glycine max] gi|356497127|ref|XP_003517414.1| chr3 37918412 37922732 +
3 domain predictions
4 GO terms
Lj3g3v3599450.1
n.a. PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502144299|ref|XP_004505648.1| chr3 43532300 43545146 +
3 domain predictions
4 GO terms
Lj3g3v3627890.1
n.a. PREDICTED: probable methionyl-tRNA synthetase-like [Glycine max] gi|356543424|ref|XP_003540160.1| chr3 43772719 43781992 -
3 domain predictions
4 GO terms
Lj4g3v0134610.2
n.a. PREDICTED: leucyl-tRNA synthetase-like [Glycine max] gi|356522021|ref|XP_003529648.1| chr4 1429652 1436749 +
3 domain predictions
4 GO terms
Lj4g3v0134610.3
n.a. PREDICTED: leucyl-tRNA synthetase-like [Glycine max] gi|356522021|ref|XP_003529648.1| chr4 1429652 1438399 +
3 domain predictions
4 GO terms
Lj5g3v2028360.2
n.a. PREDICTED: valyl-tRNA synthetase-like isoform 1 [Glycine max] gi|356535908|ref|XP_003536484.1| chr5 28644475 28653812 +
3 domain predictions
4 GO terms
Lj5g3v2182600.1
n.a. PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max] gi|356575566|ref|XP_003555910.1| chr5 31648840 31653989 -
2 domain predictions
4 GO terms
Lj5g3v2182600.2
n.a. PREDICTED: cysteinyl-tRNA synthetase-like [Glycine max] gi|356575566|ref|XP_003555910.1| chr5 31648840 31653989 -
2 domain predictions
4 GO terms
Lj6g3v0819090.1
n.a. PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Glycine max] gi|356497127|ref|XP_003517414.1| chr6 8317811 8322092 -
3 domain predictions
4 GO terms
Lj6g3v1445620.1
n.a. PREDICTED: isoleucine--tRNA ligase-like [Cicer arietinum] gi|502085158|ref|XP_004487851.1| chr6 17038357 17049306 -
3 domain predictions
4 GO terms
LotjaGi1g1v0381500.1
n.a. Cysteine--tRNA ligase; TAIR: AT2G31170.1 Cysteinyl-tRNA synthetase, class Ia family protein; Swiss-Prot: sp|F4IPY2|SYCM_ARATH Cysteine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2PHM9|A0A0B2PHM9_GLYSO Cysteine--tRNA ligase; Found in the gene: LotjaGi1g1v0381500 LjG1.1_chr1 86450298 86456330 -
2 domain predictions
4 GO terms
LotjaGi1g1v0381500.2
n.a. Cysteine--tRNA ligase; TAIR: AT2G31170.1 Cysteinyl-tRNA synthetase, class Ia family protein; Swiss-Prot: sp|F4IPY2|SYCM_ARATH Cysteine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|K7KTG7|K7KTG7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0381500 LjG1.1_chr1 86450763 86456309 -
2 domain predictions
4 GO terms
LotjaGi1g1v0381500.3
n.a. Cysteine--tRNA ligase; TAIR: AT2G31170.1 Cysteinyl-tRNA synthetase, class Ia family protein; Swiss-Prot: sp|F4IPY2|SYCM_ARATH Cysteine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0B2PHM9|A0A0B2PHM9_GLYSO Cysteine--tRNA ligase; Found in the gene: LotjaGi1g1v0381500 LjG1.1_chr1 86450763 86456309 -
2 domain predictions
4 GO terms
LotjaGi1g1v0529100.1
n.a. Leucine--tRNA ligase; TAIR: AT1G09620.1 ATP binding/leucine-tRNA ligases/aminoacyl-tRNA ligase; Swiss-Prot: sp|F4I116|SYLC_ARATH Leucine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1J9U5|I1J9U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0529100 LjG1.1_chr1 105559791 105564220 +
2 domain predictions
4 GO terms
LotjaGi1g1v0529100.2
n.a. Leucine--tRNA ligase; TAIR: AT1G09620.1 ATP binding/leucine-tRNA ligases/aminoacyl-tRNA ligase; Swiss-Prot: sp|F4I116|SYLC_ARATH Leucine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1J9U5|I1J9U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0529100 LjG1.1_chr1 105559811 105564191 +
2 domain predictions
4 GO terms
LotjaGi2g1v0111300.1
n.a. Valine--tRNA ligase; TAIR: AT5G16715.1 protein EMBRYO DEFECTIVE 2247; Swiss-Prot: sp|F4KE63|SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|A0A0B2SHS3|A0A0B2SHS3_GLYSO Valine--tRNA ligase; Found in the gene: LotjaGi2g1v0111300 LjG1.1_chr2 39876222 39926974 -
2 domain predictions
4 GO terms
LotjaGi2g1v0111300.2
n.a. Valine--tRNA ligase; TAIR: AT5G16715.1 protein EMBRYO DEFECTIVE 2247; Swiss-Prot: sp|F4KE63|SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|A0A0B2SHS3|A0A0B2SHS3_GLYSO Valine--tRNA ligase; Found in the gene: LotjaGi2g1v0111300 LjG1.1_chr2 39876827 39926854 -
2 domain predictions
4 GO terms
LotjaGi2g1v0111300.3
n.a. Valine--tRNA ligase; TAIR: AT5G16715.1 protein EMBRYO DEFECTIVE 2247; Swiss-Prot: sp|F4KE63|SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|A0A0B2SHS3|A0A0B2SHS3_GLYSO Valine--tRNA ligase; Found in the gene: LotjaGi2g1v0111300 LjG1.1_chr2 39877264 39918978 -
2 domain predictions
4 GO terms
LotjaGi2g1v0111300.4
n.a. Valine--tRNA ligase; TAIR: AT5G16715.1 protein EMBRYO DEFECTIVE 2247; Swiss-Prot: sp|F4KE63|SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|A0A0B2SHS3|A0A0B2SHS3_GLYSO Valine--tRNA ligase; Found in the gene: LotjaGi2g1v0111300 LjG1.1_chr2 39877264 39926072 -
2 domain predictions
4 GO terms
LotjaGi2g1v0111300.5
n.a. Valine--tRNA ligase; TAIR: AT5G16715.1 protein EMBRYO DEFECTIVE 2247; Swiss-Prot: sp|F4KE63|SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|A0A0B2SHS3|A0A0B2SHS3_GLYSO Valine--tRNA ligase; Found in the gene: LotjaGi2g1v0111300 LjG1.1_chr2 39877264 39926072 -
2 domain predictions
4 GO terms
LotjaGi2g1v0111300.6
n.a. Valine--tRNA ligase; TAIR: AT5G16715.1 protein EMBRYO DEFECTIVE 2247; Swiss-Prot: sp|F4KE63|SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|A0A0B2SHS3|A0A0B2SHS3_GLYSO Valine--tRNA ligase; Found in the gene: LotjaGi2g1v0111300 LjG1.1_chr2 39877264 39926565 -
2 domain predictions
4 GO terms
LotjaGi2g1v0111300.7
n.a. Valine--tRNA ligase; TAIR: AT5G16715.1 protein EMBRYO DEFECTIVE 2247; Swiss-Prot: sp|F4KE63|SYVM2_ARATH Valine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|A0A0B2SHS3|A0A0B2SHS3_GLYSO Valine--tRNA ligase; Found in the gene: LotjaGi2g1v0111300 LjG1.1_chr2 39877264 39926568 -
2 domain predictions
4 GO terms
LotjaGi2g1v0226300.1
n.a. Arginine--tRNA ligase; TAIR: AT4G26300.1 Arginyl-tRNA synthetase, class Ic; Swiss-Prot: sp|O23247|SYRM_ARATH Arginine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|W0G2X0|W0G2X0_9FABA Arginyl-tRNA synthetase; Found in the gene: LotjaGi2g1v0226300 LjG1.1_chr2 68343707 68353116 -
2 domain predictions
4 GO terms
LotjaGi2g1v0226300.2
n.a. Arginine--tRNA ligase; TAIR: AT4G26300.1 Arginyl-tRNA synthetase, class Ic; Swiss-Prot: sp|O23247|SYRM_ARATH Arginine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151T2Z4|A0A151T2Z4_CAJCA Arginyl-tRNA synthetase; Found in the gene: LotjaGi2g1v0226300 LjG1.1_chr2 68344446 68345908 -
2 domain predictions
4 GO terms
LotjaGi2g1v0226700.1
n.a. Arginine--tRNA ligase; TAIR: AT4G26300.5 Arginyl-tRNA synthetase, class Ic; Swiss-Prot: sp|O23247|SYRM_ARATH Arginine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072UDN7|A0A072UDN7_MEDTR Cytoplasmic-like arginine-tRNA ligase; Found in the gene: LotjaGi2g1v0226700 LjG1.1_chr2 68381641 68389216 +
2 domain predictions
4 GO terms
LotjaGi2g1v0226700.2
n.a. Arginine--tRNA ligase; TAIR: AT4G26300.1 Arginyl-tRNA synthetase, class Ic; Swiss-Prot: sp|O23247|SYRM_ARATH Arginine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151T2Z4|A0A151T2Z4_CAJCA Arginyl-tRNA synthetase; Found in the gene: LotjaGi2g1v0226700 LjG1.1_chr2 68387447 68388751 +
2 domain predictions
4 GO terms
LotjaGi3g1v0484200.2
n.a. Leucine--tRNA ligase; TAIR: AT1G09620.1 ATP binding/leucine-tRNA ligases/aminoacyl-tRNA ligase; Swiss-Prot: sp|F4I116|SYLC_ARATH Leucine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1J9U5|I1J9U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0484200 LjG1.1_chr3 90145572 90149348 +
2 domain predictions
4 GO terms
LotjaGi3g1v0484200.3
n.a. Leucine--tRNA ligase; TAIR: AT1G09620.1 ATP binding/leucine-tRNA ligases/aminoacyl-tRNA ligase; Swiss-Prot: sp|F4I116|SYLC_ARATH Leucine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1J9U5|I1J9U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0484200 LjG1.1_chr3 90145578 90149348 +
2 domain predictions
4 GO terms
LotjaGi3g1v0535700.1
n.a. Isoleucine-tRNA ligase; TAIR: AT4G10320.1 tRNA synthetase class I (I, L, M and V) family protein; Swiss-Prot: sp|F4JLM5|SYIC_ARATH Isoleucine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|A0A0S3SEB7|A0A0S3SEB7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0535700 LjG1.1_chr3 95247685 95260808 +
2 domain predictions
4 GO terms
LotjaGi3g1v0538600.1
n.a. Methionine-tRNA ligase, putative; TAIR: AT4G13780.1 methionine-tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS; Swiss-Prot: sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase; TrEMBL-Plants: tr|A0A0B2SPF8|A0A0B2SPF8_GLYSO Putative methionine--tRNA ligase; Found in the gene: LotjaGi3g1v0538600 LjG1.1_chr3 95499734 95520542 -
2 domain predictions
4 GO terms
LotjaGi3g1v0538600.2
n.a. Methionine-tRNA ligase, putative; TAIR: AT4G13780.1 methionine-tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS; Swiss-Prot: sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase; TrEMBL-Plants: tr|A0A0R0H9H8|A0A0R0H9H8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0538600 LjG1.1_chr3 95503516 95520312 -
2 domain predictions
4 GO terms
LotjaGi3g1v0538600.3
n.a. Methionine-tRNA ligase, putative; TAIR: AT4G13780.1 methionine-tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS; Swiss-Prot: sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase; TrEMBL-Plants: tr|A0A0R0H0Q5|A0A0R0H0Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0538600 LjG1.1_chr3 95503715 95520312 -
2 domain predictions
4 GO terms
LotjaGi4g1v0011900.1
n.a. Leucine--tRNA ligase; TAIR: AT4G04350.1 tRNA synthetase class I (I, L, M and V) family protein; Swiss-Prot: sp|Q9XEA0|SYLM_ARATH Leucine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7JJA8|G7JJA8_MEDTR Leucyl-tRNA synthetase; Found in the gene: LotjaGi4g1v0011900 LjG1.1_chr4 1489379 1498607 +
2 domain predictions
4 GO terms
LotjaGi4g1v0011900.2
n.a. Leucine--tRNA ligase; TAIR: AT4G04350.1 tRNA synthetase class I (I, L, M and V) family protein; Swiss-Prot: sp|Q9XEA0|SYLM_ARATH Leucine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7JJA8|G7JJA8_MEDTR Leucyl-tRNA synthetase; Found in the gene: LotjaGi4g1v0011900 LjG1.1_chr4 1489460 1497099 +
2 domain predictions
4 GO terms
LotjaGi4g1v0011900.3
n.a. Leucine--tRNA ligase; TAIR: AT4G04350.1 tRNA synthetase class I (I, L, M and V) family protein; Swiss-Prot: sp|Q9XEA0|SYLM_ARATH Leucine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1KNG6|I1KNG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0011900 LjG1.1_chr4 1489472 1497241 +
2 domain predictions
4 GO terms
LotjaGi5g1v0029200.1
n.a. Methionine--tRNA ligase; TAIR: AT3G55400.1 methionyl-tRNA synthetase / methionine-tRNA ligase / MetRS (cpMetRS); Swiss-Prot: sp|Q9M2T9|SYMM_ARATH Methionine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A0S3SL75|A0A0S3SL75_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0029200 LjG1.1_chr5 4792795 4803476 +
2 domain predictions
4 GO terms
LotjaGi5g1v0029200.2
n.a. Methionine--tRNA ligase; TAIR: AT3G55400.1 methionyl-tRNA synthetase / methionine-tRNA ligase / MetRS (cpMetRS); Swiss-Prot: sp|Q9M2T9|SYMM_ARATH Methionine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151U822|A0A151U822_CAJCA Methionyl-tRNA synthetase; Found in the gene: LotjaGi5g1v0029200 LjG1.1_chr5 4800096 4802711 +
2 domain predictions
4 GO terms
LotjaGi5g1v0305000.1
n.a. Valine--tRNA ligase; TAIR: AT1G14610.1 valyl-tRNA synthetase / valine-tRNA ligase (VALRS); Swiss-Prot: sp|P93736|SYVM1_ARATH Valine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A151U9X6|A0A151U9X6_CAJCA Valyl-tRNA synthetase; Found in the gene: LotjaGi5g1v0305000 LjG1.1_chr5 62314354 62324725 -
2 domain predictions
4 GO terms
LotjaGi5g1v0305000.2
n.a. Valine--tRNA ligase; TAIR: AT1G14610.1 valyl-tRNA synthetase / valine-tRNA ligase (VALRS); Swiss-Prot: sp|P93736|SYVM1_ARATH Valine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A151U9X6|A0A151U9X6_CAJCA Valyl-tRNA synthetase; Found in the gene: LotjaGi5g1v0305000 LjG1.1_chr5 62314743 62324700 -
2 domain predictions
4 GO terms