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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0227200 |
| Transcript ID | LotjaGi2g1v0227200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Profilin; TAIR: AT2G19760.1 profilin 1; Swiss-Prot: sp|O82572|PROF1_RICCO Profilin-1; TrEMBL-Plants: tr|I3SDB5|I3SDB5_LOTJA Profilin; Found in the gene: LotjaGi2g1v0227200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68412578..68414664) extracted from Lotus japonicus Gifu genome v1.2.
TGCAAGGTGGACTTAACTACGTGGTTTCAACGCTACTTCTGCTGAACACAACACAACAGAGCAACACTCAGAAATTTTCC CAGCAAATTTTCCCGGAAAATCAAACTCCCAAGCGAGAAAAATAAAGAAAGGAAGAAGATGTCGTGGCAAACCTACGTCG ATGATCACCTTCTCTGCGAAATCGAAGGTAATCATCTCAGCTCCGCCGCTATCCTCGGCCAAGACGGCAGCGTTTGGGCA CAGAGCGCCAATTTCCCTCAGGTAATTATTGAATGAGCAAGCATTTTGTTGTGTGCAGGCAACATCGGTGATCTAACGGA TCTGATTTCATTTTTGTTGATTTAGTTCAAGCCTGAGGAAATAACTGGGATTATGAATGATTTTGCGGAGCCTGGATCAC TTGCTCCAACTGGATTGTATCTTGGTGGCACAAAATATATGGTGATTCAAGGTGAGCCTGGAGCTGTCATTCGAGGGAAG AAGGTAACAACAACAACTGCTTCTAACTTCTAATCTTAGCTTCAATTTTGTATTGAAAGATAAATTTGTGAATGATGAAT TCTCAATTTGCTGGCTCTAATGTTAATAGGAGTGAGTTATAAGAAGCGAATCCGAACATGCTATCACACATGACAACCAT TTTAAATATAGGTTTATAAATGTTAAGTTTATATCTATTAGGGACTAAAATGAATTTTAGCCTAGTGATTGTATCACTTA ACTTATTTGACAATGGTTGCTCGCATAGTTGCATATTAACTGTTTAGGTCAGATTAGGATCCTTGCATCGATTGTCATGT GAAATTTTGCCAAGAGGGAGTTAGACTCAATATTTTCGCATGACAGTGTCATATGAAGTTTTCACATGAGAGAATCTTGA TCCCTGATTCGTTCTAGGTGTTTGATCACATGATATCTTCACCAAGATACCAAGCAAGAAGTGAAACTGATGTGTGTTCG TGTTTCAGAACTGAATCCAAAATTTGAAAGACAAATCTAGGCTTTGAAATCAAGATACACTTAATGCCAGATGATCATTA CACAGTTCTAGGTGTTTCTTCAACAAGTAAATGCTTTGTAGATGCTTGATGTAATGATTGTCAGACATTAAGCTTATCTC AAACCTTAGTAAGCCTTTCAAATTCTGGATTCAACTATGGAACATGAACATATATTGGTTCATTTCTTGCTCGATATCTT GTGCGGATATTGCGTTCATGTTGTTTTGACCCTTATTGCCATAATCTGAGTTTTTTTCCATGTTATTCAGGGTCCTGGTG GTGTTACTGTCAAGAAGACCAATCAAGCCTTGATCATTGGCATTTATGATGAACCTATGACTCCGGGTCAGTGCAACATG ATAGTTGAAAGGCTTGGTGATTATCTCATTGATCAGGGTCTTTAATTGTATGGTATTTCTTGTTATCATGTTTATTTTAT TGGCTCCTATACAAGGCTTTGCATTGGCTTGCCAAGACAATGCTTGACCGTGATGTAATAATATTATGGGGTATTAAAAG TCATGGGATCTGCTTACAGGAAAGAAGTGTTTGGTGCTTGAGAAGTTATGACTAGCATTTGTTGTGCTTTCTTTAGCAGG TACCTGTATACATCACAGTGGTTTTAATGGTATGGTACAATGATTGGTATAAATTAAAAACAAACCAAAAAAAAAACTTT GCTTATTTTCTTTTATCTGGCAGAAAGCCTTCTTGATAATACCAAGTTGTAGCCTCTCTATTTTCTACTTGCAATTGTCT ACCAGGTCGCCAGCACTCAACAGTTTTTGACGTATCTGTCTTAGGAAGCCCTGTTATGATCATAGTTCCATCCTAGGGCT AGTATCATGGTTAACTTCCAAACCTATCCAAGTGAACTGAATGCAAACCTGGTAATTACAATATATAGGGTATAATAATA TTTGTGGACCTTGATTCAGATTTTAAAGACAAGCTAATTTTCTGATGTAGCAAAAAAAAAAGATTTTAAAGATAAGCTTG AACAAAGAAAATTATGGCGAAAGCCATATAGTGTTCTTCTCCTTTGTGACATCCTTTGTGACATAGCGTCTCGAAAATTG ATATTGG
CDS sequence (LotjaGi2g1v0227200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTGGCAAACCTACGTCGATGATCACCTTCTCTGCGAAATCGAAGGTAATCATCTCAGCTCCGCCGCTATCCTCGG CCAAGACGGCAGCGTTTGGGCACAGAGCGCCAATTTCCCTCAGTTCAAGCCTGAGGAAATAACTGGGATTATGAATGATT TTGCGGAGCCTGGATCACTTGCTCCAACTGGATTGTATCTTGGTGGCACAAAATATATGGTGATTCAAGGTGAGCCTGGA GCTGTCATTCGAGGGAAGAAGGGTCCTGGTGGTGTTACTGTCAAGAAGACCAATCAAGCCTTGATCATTGGCATTTATGA TGAACCTATGACTCCGGGTCAGTGCAACATGATAGTTGAAAGGCTTGGTGATTATCTCATTGATCAGGGTCTTTAA
Protein sequence (LotjaGi2g1v0227200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSWQTYVDDHLLCEIEGNHLSSAAILGQDGSVWAQSANFPQFKPEEITGIMNDFAEPGSLAPTGLYLGGTKYMVIQGEPG AVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 131 | 131 | 6.3E-84 | – | |
| Gene3D | 1 | 131 | 131 | 2.4E-54 | – | |
| PANTHER | 1 | 131 | 131 | 6.3E-84 | ||
| ProSitePatterns | 1 | 8 | 8 | - | ||
| Pfam | 1 | 130 | 130 | 2.5E-44 | ||
| PRINTS | 1 | 14 | 14 | 4.4E-57 | ||
| SMART | 1 | 131 | 131 | 2.0E-61 | ||
| SUPERFAMILY | 2 | 130 | 129 | 1.31E-52 | ||
| CDD | 2 | 130 | 129 | 7.18929E-59 | ||
| PRINTS | 3 | 12 | 10 | 5.1E-52 | ||
| PRINTS | 21 | 30 | 10 | 5.1E-52 | ||
| PRINTS | 27 | 40 | 14 | 4.4E-57 | ||
| PRINTS | 40 | 60 | 21 | 5.1E-52 | ||
| PRINTS | 52 | 66 | 15 | 4.4E-57 | ||
| PRINTS | 64 | 78 | 15 | 5.1E-52 | ||
| PRINTS | 71 | 80 | 10 | 4.4E-57 | ||
| PRINTS | 84 | 99 | 16 | 4.4E-57 | ||
| PRINTS | 100 | 113 | 14 | 5.1E-52 | ||
| PRINTS | 104 | 117 | 14 | 4.4E-57 | ||
| PRINTS | 113 | 130 | 18 | 5.1E-52 | ||
| PRINTS | 117 | 130 | 14 | 4.4E-57 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Actin binding | Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. |
Expression pattern of LotjaGi2g1v0227200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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