Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi2g1v0227600
Transcript ID	LotjaGi2g1v0227600.1
Related isoforms 2	LotjaGi2g1v0227600.2 LotjaGi2g1v0227600.3
Lotus japonicus genome version	Gifu v1.2
Description	NAC domain protein; TAIR: AT4G29230.2 NAC domain containing protein 75; Swiss-Prot: sp\|O49459\|NAC73_ARATH NAC domain-containing protein 73; TrEMBL-Plants: tr\|K7K143\|K7K143_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0227600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:68529754..68535652) extracted from Lotus japonicus Gifu genome v1.2.

GACAAAAAAAACTTTTGATTCCTAATTATATATATATATATATATATATAGTGCGAGTATTGATATGATTATGTAACTAG TAAAATTTCATGTGTAATTATACCAATGCTCAGACCCACTAAATACAGTATACAATACAAAATACAAATGGTTGGGTTTC TCTACTTTTAGAACAGTGATCCTTGATTAGTACCAGCTAGCAGTGAGGCCGTTTTAATTTGTGCCTTTTGCTTTTGTAGT CAAGCAAGCCTCAAAGAAAGGTACTCACTCCTAGAGGAAGAGAGAGGAGAGGCTCTAAACTTTGAGGTGCTTTAGGCCGG GTTTTCTTTCTTTTCTATCTTGTTTCTTTGCTTCTCTTCTCTCTCATAAACCGCCTAGCTACATACATACATGCGTTAGC ACAAGTTAAAGGTACTATATATCTGTGTTTCCTTTATTATTTTTCTATCTATCTCACTGCCTTGCCTTCACTTAAAGTAC CTACAGACCCAACTCTCTGATGTGTTTGTTTCATTTCTATGGTTAAAGCACCAGGTTTATACCTCAATTCTTCTTCTTCC TCTCAATCTTTCTTTCTTTCTTTCCTGTTTCTCCTTCTTCTCTCTCTTCTTTTTTTCCTGTTTCTCCTTCCTCCTTGGTG TTTATTTTTTCTTTGTATCCCATTTCTTTCTCATCTGGATTCTGCAGATTTTATTTCCTTAGGATTAGTTAAATAATATT TTAGAGAAGTAATATTTTCAATCACTTATTTTTCTCAATATTTTTTTTCATCCTTTTCAACTACTGTTGCTGTTTTCTCA ATCGAATCATCATCTGGTTAAGTGTATATTTCTTGATATATATAGCTTGTGAAAATTGATTAGCCACATATGACATATAA TTATTTTATTTTATTTTCATTTTGGCCTATACAAGTGGCTGCAAACCATTATTATATTCCCTTGATCACCCAAGTTCTTG TATTGATCTTCTGCAAAATTTTATTTTTTCAATCCCAATATCAAGCTCTCTTGGATTTTTTTCTTTTCTGAATATAGAGA ACAACACAAGTACGTCACCACCATGAATAAGATGAACAACTTGAGTTCTGTAAGCAGCTCTGATCTCATAGATGCCAAGC TTGAAGAGCATCAGTTGGGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGAAGGAAAGCGGGTAAGAGAACAA ATATTCTTGCCTTCAATGAAAAGCCTTTGACATTAAGATATGAAGAATCACACAAATAGAAGTGTACTAATATTAATTAA TATGCTTATTATGCTTGTTTTGCTATTGCTAAAGTTTGTGTATTTGTTAAAGGCTTCTTCACCCTCTTTATTTCTCTTTA TTTCCCTTTTTCCCATGTTTCTCTTCTTTCTCTTCCTTACCTCACTCACTCTTTAGCTTCTTTTTTTCTGTTTTTTAATT ACTTGAATTAATTTCTATGGAGATTGATGCAGGATTGGCTAGGTCTGCCAGCAGGAGTGAAGTTTGATCCAACAGACCAA GAACTAATAGAGCATCTTGAAGCCAAAGTGGAGGCAAGGAACAACATGAGATCACACCCTTTGATTGATGAGTTCATCCC CACTATTGAAGGAGAAGATGGAATTTGTTACACCCATCCTGAGAAACTTCCAGGTGGGATATAAAGTGATGTAATGAAAT TCAAGTCACCTCTCTTTTTTCTATTTGATCATTCTGCTACATTTGATTCTAAAACCAGAATCAATTATGGGAATAAGCTT TTATAAGTAGCTTCTGGGTTTCAAAATTGACTCTGAAAAAAGAGAAGCTAATACATGAGTATTTCTGATTCTTTTAAACA ATTTCATTTTTATCCATATAAATTATTATTATTTAATTCCTAGTTAGGTTTTACTATATGTACAAAAACCTCTCTTGTTG TATTAATTAAGAAGAAACTTACACTCAACCAAAAGAGTTTGGGTTTCCTCTTGCAGTTCACCTAAGTCACCTAACTTTGA TTTTTGTTGTTGTGCTTCATAGGAGTAACAAGGGATGGCTTGAGCAAGCACTTCTTCCACAGACCTTCAAAGGCATACAC AACAGGCACAAGAAAGAGAAGAAAGATCCAAAATGAATGTGACTTGCAAGGTGGAGAAACCAGATGGCACAAGACAGGTA AGACCAGGCCAGTGATGATGAATGGGAAACAAAAAGGCTGCAAGAAAATCCTTGTCCTCTACACCAACTTTGGGAAAAAC AGAAAGCCTGAGAAGACCAACTGGGTGATGCATCAGTACCATCTTGGCCAGCATGAGGAGGAGAGAGAAGGGGAGCTTGT GGTGTCAAAGATATTTTATCAAACACAGCCAAGGCAATGTAACTGGTCAGATAGGAGTGCCTGCACAACAGGTGAAGGAA GTGGGGAATTGCCAAATGGTGGAAGAAGAGACAGTGGAAGTGGGAGTTGCTCTTCCAAGGAAATTGTTCCTACTCACAGA GATGAAATGACTTCTGTTATTGTTAGTGGTGTTAATCCAATGACAGGCTTCACTCATGCATTGGACATTCAACAACAGCT GAAATCTGATCATTTCAGCTTCATCCCTTTCAGGAAAAGCTTTGATCATGAGGTACATTCACAACTCTCTTTCTCTTTTA ATATATATATCACAGCACCTTCCCTATGATTGATGAACATGATGTTTCACTTAATTGCAATCTATATTGATTGGTAACCA GTACCAAAAAGTGAAAAATATGAAAGGGGTTAAGGTAGCTGCTGACATAAACCATTGCTTGCACACACAGCATGCAATTG TATGGACCTCATATGATCCTAAATCAGTGTCATCCAACTACTATATGCTTAATTTGTTTACCTAACAAGGTCTAATATAA AAAATCCACGGCACAAAGCTAGCAAGAGCTAGGATTTGGATTCCCTATAATCACAAAATCACACAGTCAAACATTTTTTA GCCGTTCGATTTTGATCAGACATAGTCATCCAATTTTAATCAGACGGCTAGAAACACTTGAATATGTGTGTGCAGGATTC CGTGACTTCAAAGAATCCATTCTAACTATCTATCTATCTATATTGTTGACAGTTGAATTTTGATGCAATGCAGGTTGGAA TAGTAGAGGCTTCAACAGCAAGGGAAGTGCAAGCATCAGGCTCATGCGAAGAGGTGCATGAACGGCATCGACAACATGTA ACTCATCATCATCAACAACAACAACAGCAACAACAACAACAACATGTAACTCATCATCATCAACAACAACAGCAGCAGCA GCAACATCACCATCAGATTGCAAACTCGGCTTTTCATATCAGTAGGCCTTCACATCCCATCTCCACCATAATCTCTCCGC TTCCAGCTCCACTACACCACACGTCCATCATCCTCGACGAAAACTCCTACCATGTTAATAGAGTAATGCTCCAAAACGAT AATTTTCAGGTAATTAATCACCACTCAAAGTCTTTCTCTTAAACATGATTACTTGATTATAACTTGTATTGTTCTTACTT AAGTAGCAGCAGTGACAATAAAGAAAGAGTAAAAGGTCAAGCTGGTCAAAGGGTCACGCTAGAAAAGGAGTGTGCTTCAT TTTAGTCTATATTCATAAATATATTTTTATTACTACATTTTTACAATATACTCTTCATGTATTTAAATTAATTTTCTAAA ATGATTTTGAAATCTGTGAACAAAACTTTTCCTAGTCCACAGTAGACAAAGTCGTGTGAATTTAATAATAGTTAAAAATA TAAAAAACTCATTGATTGTGCCTAAGAAAAATTTATGTAAGAACTATTTGTTCATCAATATTATGTAACCTTTAATAATT AATCATAATAATAAAGGAAAGGTAGACTTATATTAGTGCTAAAAGAGTGAGTCACTATACACTAAGCATGTGAAGATACA AAATGGAGTGAATCTGCACTCTGCATGGTATTGTGCACATGAGTCAGCTTTTGTGAATGCTTGAGAAGCATGAAACTATC TTTTCACTTTTTGATTGGTGTTCAACATGATGATTAAGATGTTTGTGCATTTGTGTTGAATTTGATTTGTTGACCTTGGA AATGGATCTGTGATATTTACACACATAGCAGCAACAGCAGCAACAGCATCATAAGCTAGGAGGAAGGTCTGCGTCTGGTT TGGAGGAACTCATCATGGGGTGCACTTCAAGTTCAACTGATATCAAACCGGTAAGAAACAACTTTTTGACTCGGAATTAT ATGAACTTTGTTAGTCATAATGCCCATAGCTAGAGTGAAAAAGAGAAAAGAGGCCACCGAATAAAATAATGAAAACAATT TCTTGCTTTCTATCATTGTATAGGGAAAGAACAATAGATAGAATGTGGGACCTATTGAAGTTAAAAGATCTTCTCTTTAG TTCATATTTGAATTAATGTTACAAGAGAAACTTATGCTATTTCCCATTAAACTACTACTAAAATGTTTAATTGTTTTTTC TTTATATAGAAAAAGCTACCCTTCTTCTTTGATCAAGTGATCATTGTTTTGTATAATACATGAATTTATATTTTATATCT TAGTTTTTTTTTATAAGCAAATGAATTTACATTTTAGTAGTATTTTATATCTTAGTATAATATATAAGAAAATGAAAACA CAACCTTCCAAAATTAGAGAGATTATGAGAACTTTTCATTTTTTTAGTATTACATATTCTCATAAACAAGCTGCGTTGGA AAAGTGTTAGCGACTTAATTGATTTATTTTTATTTACTGGCCATGTTAGAAATGGGAACATGAAATCAATTTCGACCACT TCATAATGTTTTGTTTCTTAAGACTTAAGAGTAAAATTGAATAAATGATTTGTTTCTATCTATACAGTATAGACATATCC AACCGATACTTAGAGAAAGAAAAGAAGAAAATAGAAAGAACGAACAAGTGTAATATATGATAGAAGAGAAAAATAAGGTT TATGTTAAATGTCTATATTATTTATATACCTGGGTATCATTTTTTATTAAATTATAATCCATAAGCTAGCTCTAACCCTA ATTATATTCTCATTTTGTATGAATGATTTCCTTTCAGGGGTCAACTATCACAAACCCACAAGAAGCTGAATGGTTGAAGT ACTCTTCTTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAGGAGAGGAGAGGGGTCATGAACCCCAAAAAGAGA GTGTGTGAGAGAGAGAACAGTAGGAAAAAAACAAAAAACCATACAACAGACAACATCATTATCATCATCATTAGTACTTC AAGCCTCCACCAAGTTAAACAAAAGGCCCAGAAATCACCATCCATAATAGTTTGCTTGCTCCTTTTCTTTCTTTTCCAAT GGAGCCTGTCTGTTTATAAAACTCTAGCTGGTGGCTCTCATTGCAAACGGGACAAGCTGGAAAGAGAGATATAGAAAGAA CGAAGGATAAAGGAAAATGTAAATCATCAGAGAGAAAAGAAAAAGACAAGAAAGGCTGCTGTCACTTCTGACACATTGAG AGGGAGGAGAACCCCAAACAAAGTAAATGTATCCTCCTGCTGCTGCATGAAAATCATCACTATTTGATTAAGATACCATC TTCATATTATTTTATTATTTTGAAATATTTGTATAATTTCACTTTTTCTTGTTTTTCTTATTTTTATTTCATACCAGAAA TATCATACCAATGAGAGTTTGTGCAAACTGCAAACCACCTTGTTACTTGTGCTGTAGTTGGTCACTTTCTTATTATAGTA AAATATTGTAATTGTTCTCCTATTTGTTTCTTTTATATTCATATTGAAAAATGAAATGTCCAAAAGAATTTCTCACTAGA GCTTCACTTTTTACTTTTCACATTTTTGAAAGGTTAAGAGAGGAATCAACTCATGTAGC

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0227600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATAAGATGAACAACTTGAGTTCTGTAAGCAGCTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAGTTGGGTGG ATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGAAGGAAAGCGGGATTGGCTAGGTCTGCCAGCAGGAGTGAAGTTTG ATCCAACAGACCAAGAACTAATAGAGCATCTTGAAGCCAAAGTGGAGGCAAGGAACAACATGAGATCACACCCTTTGATT GATGAGTTCATCCCCACTATTGAAGGAGAAGATGGAATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTAACAAGGGA TGGCTTGAGCAAGCACTTCTTCCACAGACCTTCAAAGGCATACACAACAGGCACAAGAAAGAGAAGAAAGATCCAAAATG AATGTGACTTGCAAGGTGGAGAAACCAGATGGCACAAGACAGGTAAGACCAGGCCAGTGATGATGAATGGGAAACAAAAA GGCTGCAAGAAAATCCTTGTCCTCTACACCAACTTTGGGAAAAACAGAAAGCCTGAGAAGACCAACTGGGTGATGCATCA GTACCATCTTGGCCAGCATGAGGAGGAGAGAGAAGGGGAGCTTGTGGTGTCAAAGATATTTTATCAAACACAGCCAAGGC AATGTAACTGGTCAGATAGGAGTGCCTGCACAACAGGTGAAGGAAGTGGGGAATTGCCAAATGGTGGAAGAAGAGACAGT GGAAGTGGGAGTTGCTCTTCCAAGGAAATTGTTCCTACTCACAGAGATGAAATGACTTCTGTTATTGTTAGTGGTGTTAA TCCAATGACAGGCTTCACTCATGCATTGGACATTCAACAACAGCTGAAATCTGATCATTTCAGCTTCATCCCTTTCAGGA AAAGCTTTGATCATGAGGTTGGAATAGTAGAGGCTTCAACAGCAAGGGAAGTGCAAGCATCAGGCTCATGCGAAGAGGTG CATGAACGGCATCGACAACATGTAACTCATCATCATCAACAACAACAACAGCAACAACAACAACAACATGTAACTCATCA TCATCAACAACAACAGCAGCAGCAGCAACATCACCATCAGATTGCAAACTCGGCTTTTCATATCAGTAGGCCTTCACATC CCATCTCCACCATAATCTCTCCGCTTCCAGCTCCACTACACCACACGTCCATCATCCTCGACGAAAACTCCTACCATGTT AATAGAGTAATGCTCCAAAACGATAATTTTCAGCAACAGCAGCAACAGCATCATAAGCTAGGAGGAAGGTCTGCGTCTGG TTTGGAGGAACTCATCATGGGGTGCACTTCAAGTTCAACTGATATCAAACCGGGGTCAACTATCACAAACCCACAAGAAG CTGAATGGTTGAAGTACTCTTCTTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG

Download CDS Sequence

Protein sequence (LotjaGi2g1v0227600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNKMNNLSSVSSSDLIDAKLEEHQLGGSKQCPGCGHKFEGKRDWLGLPAGVKFDPTDQELIEHLEAKVEARNNMRSHPLI DEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMMNGKQK GCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEREGELVVSKIFYQTQPRQCNWSDRSACTTGEGSGELPNGGRRDS GSGSCSSKEIVPTHRDEMTSVIVSGVNPMTGFTHALDIQQQLKSDHFSFIPFRKSFDHEVGIVEASTAREVQASGSCEEV HERHRQHVTHHHQQQQQQQQQQHVTHHHQQQQQQQQHHHQIANSAFHISRPSHPISTIISPLPAPLHHTSIILDENSYHV NRVMLQNDNFQQQQQQHHKLGGRSASGLEELIMGCTSSSTDIKPGSTITNPQEAEWLKYSSYWPDPDNPDHHG

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31079:SF31 View details on PTHR31079:SF31 Search for proteins/transripts with this domain View external data on PTHR31079:SF31	4	445	442	2.4E-186	–
PANTHER	PTHR31079 View details on PTHR31079 Search for proteins/transripts with this domain View external data on PTHR31079	4	445	442	2.4E-186	–
SUPERFAMILY	SSF101941 View details on SSF101941 Search for proteins/transripts with this domain View external data on SSF101941	42	209	168	2.09E-38	IPR036093 Show description in modal box View details on IPR036093 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51005 View details on PS51005 Search for proteins/transripts with this domain View external data on PS51005	47	209	163	32.812	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF02365 View details on PF02365 Search for proteins/transripts with this domain View external data on PF02365	48	190	143	2.9E-24	IPR003441 Show description in modal box View details on IPR003441 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.310.150 View details on G3DSA:3.30.310.150 Search for proteins/transripts with this domain View external data on G3DSA:3.30.310.150	56	214	159	5.8E-26	IPR036093 Show description in modal box View details on IPR036093 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	219	253	35	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	313	361	49	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	332	361	30	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0227600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi2g1v0227600.1