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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0229300 |
| Transcript ID | LotjaGi2g1v0229300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G30400.1 multidrug resistance-associated protein 1; Swiss-Prot: sp|P32657|CHD1_YEAST Chromo domain-containing protein 1; TrEMBL-Plants: tr|Q84ZV5|Q84ZV5_SOYBN Polyprotein; Found in the gene: LotjaGi2g1v0229300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68719432..68720985) extracted from Lotus japonicus Gifu genome v1.2.
AAGGAATTTATTCAACATTGTATAATATGTCAGCAAGCAAAAGTCAGTAATACATTGCCCTCAGGATTACTACAACCTTT ACCTATTCCTAATTAAGTCTGGGAAGATATTGCCATGGATTTTATAACAGGTTTGCCTACTGTGAATGGGTTTTCTGTTA TCATGGTAGTGATAGATCGACTGACTAAATATGCTCATTTCCTACCATTGAATGCTGACTACAGTAGCAAATCAGTGGCT GAAGCTTTCATGAATAATATAGTGAAACTGCATGGGATTCCAAAATCCATTGTGTCAGACAGGGATAAGGTTTTCACTAG TTCGTTTTGGCAACACTTATTCAAATTACATGGCACTACACTAGCTATGTCCTCGGCATACCATCCACAAACAGATGGCC AGTTGGAAATATTAAACAAATGCTTGGAAATGTATCTTAGATGCTTCACTTATGAGAATCCAAAAGTTTGGCTGAAAGCT CTGCCATGGTCTGAATTCTGGTATAACACATCCTTTCACACTAGTTTGGGCATGACTCCATTCAGAGCATTATATGGAAG GGAGCCTCCAACTCTGACTAGACAACCATATACTACTTCAGATCCTATAGAACTGAAGGAACAATTGACAGACAAAGATA ACTTGATAGCCAAGCTAAAAGTCAATCTAACAAGGGCGCAACAAGTGATGAAGACTCAGGCTAATAGGAAGAGACAACAA TTAACTTTGGAGATGGGTGACTAAGTTCTGGTTAAACTGCAACCATACAGACAACATTCTGCAGTGTTAAGAAGAAATCA CAAGCTGTCAATGAAGTATTTTGGTCCCTTCACTGTTAAAGAGAAAATAGGGACAATAGCCTATAAGCTGGAGCTTCCTC CCACTGCAAGGATTCACCCAATTTTCCATGTATCTCAGCTGAAATTGTTCAAGGGGACTGCTTCTGAACCTTACATACCA TTACCATTAACAGTTACTGAACTGGGACCATTTATGATACCAGTGAAAGTACTTGCAACACAAAAGATCATAAGAGGTAC AAGTCATATTGGGCAGATTTTGGTTCAATGGGAGAATGGTTTACAAGAAGAAGCCACCTGGGAGGACATTGATGATATTA TGGTAAGCTACCCTTCTTTCAACCTTGAGGACAAGGTTGATTTCAAAGGGGAAGGTAATGTAATGAAAAGCAAGTCACGT GATGGAAGTGAGGCCAAGAATGATGAGTCACGCATAATGGAGGGTATCAATAACAAACTTGCTGAAAAAGGGGAAAGGGG TCGCGGGAAGAGAGAGAAAAGGCCCAGCTGGAAGCTAATTGAAGGAGGGGAATAAATAGGGAAATAGTGCAGTGTATTAG GCATGAATGTTATGATGTTTGCTTCTTCTTTTGTCTCTGATTTCTCCTTCTGTTTCTGAATCTTCTTCTCTGTTTCTGAA TCTTCTTCTCTGCATTTTTGTACTTGAGCTCTGATTCTTCACTGGAAATCAAGAGCTAGTTATCCAATACAACTGTTTCC TTCAATTGAATTTTCTGTTCTTCACTTTCATCAT
CDS sequence (LotjaGi2g1v0229300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTATTTTGGTCCCTTCACTGTTAAAGAGAAAATAGGGACAATAGCCTATAAGCTGGAGCTTCCTCCCACTGCAAG GATTCACCCAATTTTCCATGTATCTCAGCTGAAATTGTTCAAGGGGACTGCTTCTGAACCTTACATACCATTACCATTAA CAGTTACTGAACTGGGACCATTTATGATACCAGTGAAAGTACTTGCAACACAAAAGATCATAAGAGGTACAAGTCATATT GGGCAGATTTTGGTTCAATGGGAGAATGGTTTACAAGAAGAAGCCACCTGGGAGGACATTGATGATATTATGGTAAGCTA CCCTTCTTTCAACCTTGAGGACAAGGTTGATTTCAAAGGGGAAGGTAATGTAATGAAAAGCAAGTCACGTGATGGAAGTG AGGCCAAGAATGATGAGTCACGCATAATGGAGGGTATCAATAACAAACTTGCTGAAAAAGGGGAAAGGGGTCGCGGGAAG AGAGAGAAAAGGCCCAGCTGGAAGCTAATTGAAGGAGGGGAATAA
Protein sequence (LotjaGi2g1v0229300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKYFGPFTVKEKIGTIAYKLELPPTARIHPIFHVSQLKLFKGTASEPYIPLPLTVTELGPFMIPVKVLATQKIIRGTSHI GQILVQWENGLQEEATWEDIDDIMVSYPSFNLEDKVDFKGEGNVMKSKSRDGSEAKNDESRIMEGINNKLAEKGERGRGK REKRPSWKLIEGGE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 135 | 134 | 5.4E-37 | – | |
| PANTHER | 2 | 135 | 134 | 5.4E-37 | – | |
| SUPERFAMILY | 26 | 104 | 79 | 4.81E-5 | ||
| CDD | 64 | 112 | 49 | 1.24699E-6 | – | |
| MobiDBLite | 122 | 174 | 53 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0229300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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