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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0229400 |
| Transcript ID | LotjaGi2g1v0229400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor; TAIR: AT2G38470.1 WRKY DNA-binding protein 33; Swiss-Prot: sp|Q6IEQ7|WRK24_ORYSJ WRKY transcription factor WRKY24; TrEMBL-Plants: tr|I1MBH2|I1MBH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0229400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:68725792..68729703) extracted from Lotus japonicus Gifu genome v1.2.
GATAGAAGAAAATATAAAAAATGAAAGTTAGTGAAAATGAAATTGTGAGAAATATAAATATATATTAAAATCCATATAAA AAAGAAAATGGCAACAAGTTACAAATATACACTTTCTCATACACATTCCAAGAAATCTCTTCTCATCCTTTCTTCCACAC GTAACCATCTTCTTCTTCCCCTCCTCCTTTCTGCTTCTCCCTCTCCCTTTCATGTTTTAATCCAAGCCCTTCCATTCTTA ACCCCTCCCTCCCATATTGCTTCTTCTTCTTCTGGTATCTCAAATTTGACTACTCTGCTAGCTGCATCCTTTTAATCCGC CAACTTGATGACCACTTCCTTCTCTGACCGCCGCCGCACTTCTCCCGCCGACCACAACCTCGGAGGCTCCGAAAGGCCTC ATCAGCTGTTGTTGTCGGATCCAACAGGTTCTGGTGCGCCCAAATTCAAGTCCACACCTCCTCCACTTCCCATTTCTCCT TCTTACTTTTCACTCCCTCCTGGGTTGAGCTTTGCAGAGCTGCTTGATTCCCCTGTTCTCCTCAACTCCAATTCTCACGT AAGTCCCACATCAAAAGTTCCTAGCTTTTTTCTCCCAAGATCCTTGAACAAATGAAGCATAGTTTTATAAAAGAAACTTT AAAAACAAAAGCACAAGTTGACCTGAGGCTTCAGTTGACTTGATATTTTTTTTTGTTCAAAGATTCTGAATTGGTTTGGT TTTGGACATTATATTGTATCCTTGTTGTATGCTTGTCTGGCTTATTTTTGTCATCATTTCCTATTGCATTTCATAACTTT GTTTTGATAACTTTCTTGTTCGACTTAATTTTTGTATTCTTGTCATAACTTTGTATTGATTAGAGGGTTTTTTTTTTTGT GGTTTTGTGAATTCAGATTTTGCCATCTCCAACAACTGGAACATTTGGCTTCAATTGGAAGATCAGTTCTGGGGAAAACC ATCAGAATAATGTCAAGGAAGAAGATAAAAGCTTCTCAAATTTCTCCTTCCAAACCCAATCACAGCCTCCTATTCCTTCC ACAGCAGGGTTTCAATCTTCAAACAGCATAGTTCAAAATGTGAGTGACCAATTTCAATGCACAAACTCGTTCTATGATTT TCTCTTGTAGGTTTATAAAATAAGAACTCGTTTGAATGCAAACCAAAAAGTACTTATGGAGAGCTTAATGTGCTTTTTTA TAGATCATTTTTGGATTGAAGTTGAACTCGCATTTTCTCAATGGACCAATTCACCCTCATTGATGTTTATCTTGAAAACC GTGTATTTCTCGGTTAAATTTGCTAATTTTGCATCGAAACTCGCCCAAATGGATCAAAATGTGAACCGAACATACTTAGT AGATAAGCTCCAATAAGTCTATATACAAATGAGCTCTAAGTTCAATTCGCTAACTTGTTTCAAACTTTCAACAGGGATGG GCTAAACAAGATGAATTTTCTTCTGGAATGAGTATGGGGATGGTGAAAACTGAAGCCTCTTCTTCTATACAGAGTTATAA TAACATTAACAACAATTACCATCCACAACAAGTTCAGACCCTGAGTAGAAGGTCAGATGATGGGTACAGCTGGAGGAAAT ATGGGCAAAAGCAAGTGAAAGGAAGTGAGAATCCAAGAAGCTACTACAAATGCACATACCCCAAATGCCCAACAAAGAAA AAAGTTGAGAGGGCTTTAGATGGACAAGTTACTGAGATTGTTTACAAAGGCACTCATAACCATCCCAAGCCTCAGGCTCC TCATAAGAGGAACAGCTCATTCACTACCTCAAATCATGTCAGCACTGAAATACAAGGCGCCACTCATGGCAGTGGACAAA TGGATTCTGTTGCAACCCCTGAAAACTCATCATTGTCAATGGGGGGTGATGATTTTGAACAGAGTTCTATGAGTAAATCA GGAGGAGAGGAGCTTGATGAAGATGAACCTCATGGCAAAAAATGGTGAGTGTTTAGTTTTTAATGTGATCACTTCCTTGA CATATCATTTCATTCCTTGGTTAATTTTTCCATGAATGTTCCAGGAGAATGGAGGGTGAAAATGAGGGCATGTCAGCAGC AGGAAGCAGAACGGTGAAAGAATCCAGAGTTGTGGTTCAAACAACCAGTGACATTGATATTCTTGATGATGGATACCGAT GGAGGAAATATGGGCAGAAAGTAGTAAAGGGAAATCCAAATCCAAGGTAAAAACCACTATTAATTCTTCTATTAACTTGC AAAAGTCATTGTCCAACTTATAAAATTTATAAGGTCACATTTTAATACCGGTTGACACGAGTGTATGTAGACGCTAGCAT ACACTTCTAAATAAAGGTGAATGGAACACTTCTTAGTGTGTGTTTATATAAATGTTGGATTAAGCTTTTGCCCAATCCAA TCCTTCACATTCATTAACTTTTACGCCTGGAAATGTGAGCGAATGTGTTGGAATAGGTGTTTGCCCAATTCATAACCCTT CTCATCTGCTGACTTTTATGCCTTGATATGTGCTTTGTGCGCAAATGTACATTATAGAAGGAACTAACACAATAAATCAC ATTGCGTTTAACTGATATCCAAACATATTAAATTTAAAAGTGGTTCGACTTTCAAGTTCTATTTCGAACCCCTTAAGTTT ACCGTTAAAAAATATGAAAATAGGCAAATAACACATTCAAAGACATTTTTTTTTTGTTAAAGTAGCAAGTTGGTACCGTA ACAAAAAGTACATCATAACGTGTTATTTTCCTGTTTTCATACTTTTTTAAAACCAAACTTACTAACTAGTTTTAGAATTT CATGATAGATTTTCAGTTTTTCACTTTATAGTGCTAGTAATTAATAGTAGAAAATCATGACACTCCTTGATTGCTCAAAT GTGGTATGTACACACTACACACCATAAATACATGACTGCTAGTTGTTACTCTTTGTTGGAATTCTACTATATGCATGTAT CTGCAATCTGCGTTGCTCTGTCTTAATTTCCTTGGTCAAATTTGGCAACCCTTGTTTCTGTGTGCATGCATTGTACTTAA AATCTTCTAGGCCATGTGAACTTTAAGAAATAAACAGTATTCCTATCTATACTGTGTTATCTTAGTTTCTGTTGAAATTG TGACTGTTATAGGAGTTACTACAAGTGCACAAGCCGTGGATGCCCAGTGAGGAAGCACGTGGAGCGAGCCTCACAGGATC TAAAAGCAGTGATCACAACCTATGAGGGAAAGCACAACCATGAAGTCCCTCCACCACGTGGCAGTGGTGGTGGTAGCTAC TCTTCTATCAATAGACCAGTGCAAACCAATACCACAAACAACACAGCAACAAGCGTAGCCTCTGCTATGACTCTGAGTTC TCAACACAATAATAAAACTTCCTCCATCAACAATTCTCTTCAAGGACAAGCAGTGTTCACTTCTGAGATGCCTCAGAGCC AGAGCCAGGGAAACATTGGATTCCAAGGGTTTGGTGGGAATGCGATAGAATCTTATTATATGAACTTGAATCAGCAGCAA TCTGAGGATATTTTTTCTTCCGGGGCCAAGGAGGAGCCTGTAGATGACTCGTTTTTTGAATCTTTGCTATGTTAATAGGA ATACTTTTTCTCATTTTGCATAGTTTTGGATGGTTGGAATTTTTGGAAGGGGGTTTGGTTTAGGATTTTATACTTCACTA ATAAAATCAGCTTCATTCCATTAATTATCTTTTTATTATTTTTTTATTGTATATTTCCACACCCACAGGATTGTAACTAA TACTGTATATTTATTCATAATAATGGTTCATTACTTCATTGTTCATTTTAAGGGAATTTCAATTTCTTTCAAATGACATA GTTGCTATCTTTACGTGGTTTGCAAGTTTTAAGTCATTTTAATTTATTTATTCTAATTGTGAGTTATTTATT
CDS sequence (LotjaGi2g1v0229400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCACTTCCTTCTCTGACCGCCGCCGCACTTCTCCCGCCGACCACAACCTCGGAGGCTCCGAAAGGCCTCATCAGCT GTTGTTGTCGGATCCAACAGGTTCTGGTGCGCCCAAATTCAAGTCCACACCTCCTCCACTTCCCATTTCTCCTTCTTACT TTTCACTCCCTCCTGGGTTGAGCTTTGCAGAGCTGCTTGATTCCCCTGTTCTCCTCAACTCCAATTCTCACATTTTGCCA TCTCCAACAACTGGAACATTTGGCTTCAATTGGAAGATCAGTTCTGGGGAAAACCATCAGAATAATGTCAAGGAAGAAGA TAAAAGCTTCTCAAATTTCTCCTTCCAAACCCAATCACAGCCTCCTATTCCTTCCACAGCAGGGTTTCAATCTTCAAACA GCATAGTTCAAAATGGATGGGCTAAACAAGATGAATTTTCTTCTGGAATGAGTATGGGGATGGTGAAAACTGAAGCCTCT TCTTCTATACAGAGTTATAATAACATTAACAACAATTACCATCCACAACAAGTTCAGACCCTGAGTAGAAGGTCAGATGA TGGGTACAGCTGGAGGAAATATGGGCAAAAGCAAGTGAAAGGAAGTGAGAATCCAAGAAGCTACTACAAATGCACATACC CCAAATGCCCAACAAAGAAAAAAGTTGAGAGGGCTTTAGATGGACAAGTTACTGAGATTGTTTACAAAGGCACTCATAAC CATCCCAAGCCTCAGGCTCCTCATAAGAGGAACAGCTCATTCACTACCTCAAATCATGTCAGCACTGAAATACAAGGCGC CACTCATGGCAGTGGACAAATGGATTCTGTTGCAACCCCTGAAAACTCATCATTGTCAATGGGGGGTGATGATTTTGAAC AGAGTTCTATGAGTAAATCAGGAGGAGAGGAGCTTGATGAAGATGAACCTCATGGCAAAAAATGGAGAATGGAGGGTGAA AATGAGGGCATGTCAGCAGCAGGAAGCAGAACGGTGAAAGAATCCAGAGTTGTGGTTCAAACAACCAGTGACATTGATAT TCTTGATGATGGATACCGATGGAGGAAATATGGGCAGAAAGTAGTAAAGGGAAATCCAAATCCAAGGAGTTACTACAAGT GCACAAGCCGTGGATGCCCAGTGAGGAAGCACGTGGAGCGAGCCTCACAGGATCTAAAAGCAGTGATCACAACCTATGAG GGAAAGCACAACCATGAAGTCCCTCCACCACGTGGCAGTGGTGGTGGTAGCTACTCTTCTATCAATAGACCAGTGCAAAC CAATACCACAAACAACACAGCAACAAGCGTAGCCTCTGCTATGACTCTGAGTTCTCAACACAATAATAAAACTTCCTCCA TCAACAATTCTCTTCAAGGACAAGCAGTGTTCACTTCTGAGATGCCTCAGAGCCAGAGCCAGGGAAACATTGGATTCCAA GGGTTTGGTGGGAATGCGATAGAATCTTATTATATGAACTTGAATCAGCAGCAATCTGAGGATATTTTTTCTTCCGGGGC CAAGGAGGAGCCTGTAGATGACTCGTTTTTTGAATCTTTGCTATGTTAA
Protein sequence (LotjaGi2g1v0229400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTSFSDRRRTSPADHNLGGSERPHQLLLSDPTGSGAPKFKSTPPPLPISPSYFSLPPGLSFAELLDSPVLLNSNSHILP SPTTGTFGFNWKISSGENHQNNVKEEDKSFSNFSFQTQSQPPIPSTAGFQSSNSIVQNGWAKQDEFSSGMSMGMVKTEAS SSIQSYNNINNNYHPQQVQTLSRRSDDGYSWRKYGQKQVKGSENPRSYYKCTYPKCPTKKKVERALDGQVTEIVYKGTHN HPKPQAPHKRNSSFTTSNHVSTEIQGATHGSGQMDSVATPENSSLSMGGDDFEQSSMSKSGGEELDEDEPHGKKWRMEGE NEGMSAAGSRTVKESRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSRGCPVRKHVERASQDLKAVITTYE GKHNHEVPPPRGSGGGSYSSINRPVQTNTTNNTATSVASAMTLSSQHNNKTSSINNSLQGQAVFTSEMPQSQSQGNIGFQ GFGGNAIESYYMNLNQQQSEDIFSSGAKEEPVDDSFFESLLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 44 | 44 | - | – | |
| PANTHER | 29 | 518 | 490 | 3.9E-204 | – | |
| PANTHER | 29 | 518 | 490 | 3.9E-204 | – | |
| Gene3D | 171 | 245 | 75 | 1.6E-27 | ||
| SUPERFAMILY | 184 | 244 | 61 | 6.41E-25 | ||
| SMART | 185 | 243 | 59 | 3.4E-35 | ||
| Pfam | 186 | 242 | 57 | 2.8E-25 | ||
| ProSiteProfiles | 186 | 244 | 59 | 23.525 | ||
| MobiDBLite | 238 | 314 | 77 | - | – | |
| MobiDBLite | 247 | 299 | 53 | - | – | |
| MobiDBLite | 300 | 314 | 15 | - | – | |
| Gene3D | 332 | 409 | 78 | 6.1E-35 | ||
| SUPERFAMILY | 340 | 408 | 69 | 4.32E-29 | ||
| ProSiteProfiles | 343 | 408 | 66 | 38.423 | ||
| SMART | 348 | 407 | 60 | 8.9E-39 | ||
| Pfam | 349 | 406 | 58 | 1.0E-25 | ||
| MobiDBLite | 400 | 431 | 32 | - | – | |
| MobiDBLite | 415 | 431 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0229400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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