Transcript — View — Lotus Base

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LotjaGi2g1v0230300.2

Overview

Field	Value
Gene ID	LotjaGi2g1v0230300
Transcript ID	LotjaGi2g1v0230300.2
Related isoforms 1	LotjaGi2g1v0230300.1
Lotus japonicus genome version	Gifu v1.2
Description	Charged multivesicular body protein; TAIR: AT2G19830.2 SNF7 family protein; Swiss-Prot: sp\|O82197\|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1; TrEMBL-Plants: tr\|A0A0A0LHT5\|A0A0A0LHT5_CUCSA Uncharacterized protein; Found in the gene: LotjaGi2g1v0230300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:68989269..68990566) extracted from Lotus japonicus Gifu genome v1.2.

GCAGAAAGTGCAGCTATATCTAAAAATATAAATATGGCTTCTGCTATGCTATGTGGTATGTGGATACATGTTGAACATAA TTGTTTCACTTTAATGAACTATATTGTTCTATTTTGCTCATTATTTATTGTCTTGCAGCAAGACTTGATCTGAATAGCAA GTGTTTTAAGCAGAAATTTACACTTTGAGGGAGAGAATTTGACCATTTGAATGTGTTGTTCATTCAATTATGTAGACACT TGAAATGCTAGAGAAAAAAGATAAAGTACTCCTCAAGAAGGCTGCAGCTGAAGTTGATAAGGCCAGAATTCACCAAGGGA AAGAACAAAAAGGGCAAGTTAATTTGTGACTCATAAAGTGTGCTTGTTTTTACTTGCATCATGACATGTGATATGAGTGT TGATTTAATGCAGCTGCAATACAAATATACAATGTTTGAAGAGGAAGAGGTTATATGAGCAGCAAATTGAGCAGCTTGGA AATTTTCAGTTGCGTATTCATGACCAGGTCTAAATGCAATTTTGCATATTGTAACAGTTCAGAATGATGATTTAGGTTAT TAAGCTTCTTTTTGCATCTTATGTTGGTAATCTTTGTCACAGATAATAATGTTGGAAGGTGCTAAAGCCACCACGGAAAC GGTGGATGCATTAAGAACTGGAGCAGCTGCCATGAAGGCTATGCAGACATCAATGTATGTAGCGCTATTTATGTTATAAA ATGATCACACTGAAACATTATCTTATATTTTGTTACAACTCAATTTCATGCTCTTTGTATACTATGTTGATGAAGTGTTG ATTTTGATTTATGGCATTGTGGAGTTTGCTACACTTTTTTGCTCTTCAGGAATATTGATGATGTTGACAAGGCAGTTGAT GAGATCAATGAACAGAATGAGAACATGAAACAGATTCAGGGAGCATTGTCTGTTCCAATTGGTGCAGCTGCTGATTTTGA TGAGGTCAAATGCTTATTTTATTTCTACTATATTGGTTGCAGACAACTGAGACAAGATGTTTGTTCCTTTTATTGTAGAG CACTAATTAGTAATTAATGCATGCCCATGGAGCATTCTGATTTATTTATTTTGCCTATTTCAGGATGAATTGGAAGCAGA ACTTGAAGAGCTGGAGGGTGCTGAGTTGGAAGAACAGCTTGTTCAGCCAACAACTACAGCTCCTGCAGCCTCAGTACAGG TCCAACCTGGGCCACAACAACCTAGTCCCCCTGTTCCGGTGAAGCCGACACCTGAGGAAGATGAATTGGCAGCTTTGCAG GCTGAGATGGTACTTTGA

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0230300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTAGAGAAAAAAGATAAAGTACTCCTCAAGAAGGCTGCAGCTGAAGTTGATAAGGCCAGAATTCACCAAGGGAAAGA ACAAAAAGGCTGCAATACAAATATACAATGTTTGAAGAGGAAGAGGTTATATGAGCAGCAAATTGAGCAGCTTGGAAATT TTCAGTTGCGTATTCATGACCAGATAATAATGTTGGAAGGTGCTAAAGCCACCACGGAAACGGTGGATGCATTAAGAACT GGAGCAGCTGCCATGAAGGCTATGCAGACATCAATGAATATTGATGATGTTGACAAGGCAGTTGATGAGATCAATGAACA GAATGAGAACATGAAACAGATTCAGGGAGCATTGTCTGTTCCAATTGGTGCAGCTGCTGATTTTGATGAGGATGAATTGG AAGCAGAACTTGAAGAGCTGGAGGGTGCTGAGTTGGAAGAACAGCTTGTTCAGCCAACAACTACAGCTCCTGCAGCCTCA GTACAGGTCCAACCTGGGCCACAACAACCTAGTCCCCCTGTTCCGGTGAAGCCGACACCTGAGGAAGATGAATTGGCAGC TTTGCAGGCTGAGATGGTACTTTGA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0230300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLEKKDKVLLKKAAAEVDKARIHQGKEQKGCNTNIQCLKRKRLYEQQIEQLGNFQLRIHDQIIMLEGAKATTETVDALRT GAAAMKAMQTSMNIDDVDKAVDEINEQNENMKQIQGALSVPIGAAADFDEDELEAELEELEGAELEEQLVQPTTTAPAAS VQVQPGPQQPSPPVPVKPTPEEDELAALQAEMVL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR22761 View details on PTHR22761 Search for proteins/transripts with this domain View external data on PTHR22761	1	194	194	1.2E-90	–
Gene3D	G3DSA:1.10.287.1060 View details on G3DSA:1.10.287.1060 Search for proteins/transripts with this domain View external data on G3DSA:1.10.287.1060	1	66	66	3.4E-12	–
PANTHER	PTHR22761:SF49 View details on PTHR22761:SF49 Search for proteins/transripts with this domain View external data on PTHR22761:SF49	1	194	194	1.2E-90	–
Pfam	PF03357 View details on PF03357 Search for proteins/transripts with this domain View external data on PF03357	1	159	159	6.0E-34	IPR005024 Show description in modal box View details on IPR005024 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	94	117	24	-	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	126	148	23	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	150	182	33	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	150	165	16	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0007034 View details of GO:0007034 AmiGO InterPro QuickGO	Biological process	Vacuolar transport	The directed movement of substances into, out of or within a vacuole.	Subterm of View details of GO:0006810

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0230300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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