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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0231300 |
| Transcript ID | LotjaGi2g1v0231300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pollen-specific SF21-like protein; TAIR: AT5G56750.1 N-MYC downregulated-like 1; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|I1KJU7|I1KJU7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0231300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69066079..69068498) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTGTTTTGTTTCTTCTCAGGTTCAAATTTTCTCCTGTGTTGTATCCTAAATGATTTTTAGATTAATATTTCAGGAAC ATCATATTCGGACAGGCTGTGGTTCTGTATCTGTCATAGTCTATGGGGATCAACACAAACCAGCTCTTATCACTTATCCG GATTTAGCATTAAATTGTAAGTTGATGCAGTTCATTTTCTTTTAGCCAAATACTCTTGAGGCAGATATGCTTTAATCTAT CCTCTTAATTGAAGCATAATTTACTTCTATTCATTGTGGCAGACATGTCTTGTTTCCAAGGATTATTTTTCTGTCCGGAG GCGGCTTCTTTGCTACTTCACAACTTTTGCATATACCATATCAGTCCTCCTGGGCATGAGGTTTGTATGTTTGATTAACT TGAATTGGATGTACTTTTAATTGCATTTAGTATTGAATATCATTGTTCACATAGTTTATCTGGAACTTCCACAAGAGTTC TTGCAGTTGGGAGCTGCTGCAATTTGTCCTGATGATCATGTCCCTTCTGTTGAGGATTTAGCAGATCAAATAATTGAAAT TCTCAACTATTTTAGGCAAGTACATTATTATTACTGAGGTCACTTTTTGAACTGTTCGATTTATTTGAGAATACATTCAT GATTCTATGCGTAAAAAGGTTGTGATCTACTATTGTTTTTTTTTTTTGAACTTTACTATTGTTCTTCTTGAAGCAATATC CTAAAATAAAAGGTAGTAAAAATGCTCTTATTAAAGGAACATCTAATGTCTATGATATACTTACTAATTATATGAATTAT TTACTTCTCCAGGCTTGATTCTGTGATGTGTATGGGAGTAATGGCTGGTGCTTATATCCTTTCTTTATTTGCAGTATGTA TCCCATTTAGTTTGAAGGGGGGGAAACTGCCCTGTTTAACCAACACTTTCATTAATGCTTAGAGAGTTTTTAATATGAAG TCAATCTTATCGATTTTGTTCTTTTTCACTTCTTCGACACAGATTAAATATAGGGAGCGTGTTCTTGGGTTAATACTTGT ATCTCCCTTATGCAAAGCTCCTTCATGGAGTGAATGGTTTTACAACAAGGTTCCTTTCAAATGCTCACATTCTATGCATT TATGAATTCCTTAATTCAAAAACATGGCCTAAAACTGCTTCTAATTTCAGGTCATGTCAAATTTGTTATATTACTATGGT GTATGCGGCTTGCTGAAGGAGTGTTTGCTCCAGAGATACTTCAGCAAGGTATTATAGTGCGAGGTTCTTAGCCCTTTTGT ATTTGCTCTCTTATTTAATATGTTCTGAGGTTTCCTTGTCAACTTTAACAGGACGTTCGTGGTAATGCTGAAGTTCCGGA ATCAGAGCTAGTTCAAGCTTGTAGAAAAGTCAGTGCTAAGCTAATTTAGTTTCTTCTCCTGCACTTCCCTATAGCTTAAA TGTGATTGTTATGTCCTTACTTCTTTATTTTTGGGTGTATTTGCCTCACTTATCACTGGTTCCTTGTCATGTCTTTTCTT TTCCAGCTGCTGGATGAGAGAAAGAGCATCAATGTCTTTCGGTTTCTTCATGCTATTAATGAGTAAGATCTGCTACATGG TTACCTCAACATATTTAACTATTTACTTATGTGCACTGCCTCTGGTAGTTTGAGTTACCATATTTATGTGCTCTACTTTT GTGTTGCCGACTTGCAGGAGACCTGATATAACAGATGGATTGAAGACGTTAAAATGTCGAACGCTTATTTTTGTCGGGGA CAGTTCTCCTTTCCATTCGGAGGCTATTCACATGACTTCAAAACTTGATAGGAGATATAGTGCCTTGGTTGAGGTATGAA ATTGTGAAAGTTCGGATTTTTGAAGGATGTACATAACATCCATGTTAATAACAAGAAAGTATACCTAAAAGGCTTGACAT TGGATATATGGGTTTTTCATGTATTTCTGGATCCACGTGATTCTTAGCATGTTTGGATCAGTTCTTTTTCATCAAAATCA AATTCTGAAACCTAGAAACTTCCCCATAATTGATTCTGACTTTAGAATCAATTGTAGAAGAATTTCCGAACAACAGTGTT GATTATGATAAATAACAAAATATGAATGCATGTAACATTAGTTACAAGGCCTAAGATAGCATGGAAGTTTTGCATATCAT TCATTATTTGAAAGACAACATCTGTGTTGATATGGCAGGTCCAGGCTTGTGGATCCATGGTTACAGAGGAACAACCACAT GCAATGCTGATTCCCATGGAGTATTTCTTAATGGGTTATGGATTGTACAGACCAAGCTTTTTCAGTGACAGCCCAAAAAG CCCACTTAGCCCATCTTGTATCTCTCCAGAGCTTCTTTCCCCAGAAAGCATGGGATTGAAGCTAAAGCCTATTAAGACAC GTGTTTAATTGGAAGTTTGA
CDS sequence (LotjaGi2g1v0231300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTTTAGATTAATATTTCAGGAACATCATATTCGGACAGGCTGTGGTTCTGTATCTGTCATAGTCTATGGGGATCA ACACAAACCAGCTCTTATCACTTATCCGGATTTAGCATTAAATTACATGTCTTGTTTCCAAGGATTATTTTTCTGTCCGG AGGCGGCTTCTTTGCTACTTCACAACTTTTGCATATACCATATCAGTCCTCCTGGGCATGAGTTGGGAGCTGCTGCAATT TGTCCTGATGATCATGTCCCTTCTGTTGAGGATTTAGCAGATCAAATAATTGAAATTCTCAACTATTTTAGGCTTGATTC TGTGATGTGTATGGGAGTAATGGCTGGTGCTTATATCCTTTCTTTATTTGCAATTAAATATAGGGAGCGTGTTCTTGGGT TAATACTTGTATCTCCCTTATGCAAAGCTCCTTCATGGAGTGAATGGTTTTACAACAAGGTCATGTCAAATTTGTTATAT TACTATGGTGTATGCGGCTTGCTGAAGGAGTGTTTGCTCCAGAGATACTTCAGCAAGGACGTTCGTGGTAATGCTGAAGT TCCGGAATCAGAGCTAGTTCAAGCTTGTAGAAAACTGCTGGATGAGAGAAAGAGCATCAATGTCTTTCGGTTTCTTCATG CTATTAATGAGAGACCTGATATAACAGATGGATTGAAGACGTTAAAATGTCGAACGCTTATTTTTGTCGGGGACAGTTCT CCTTTCCATTCGGAGGCTATTCACATGACTTCAAAACTTGATAGGAGATATAGTGCCTTGGTTGAGGTCCAGGCTTGTGG ATCCATGGTTACAGAGGAACAACCACATGCAATGCTGATTCCCATGGAGTATTTCTTAATGGGTTATGGATTGTACAGAC CAAGCTTTTTCAGTGACAGCCCAAAAAGCCCACTTAGCCCATCTTGTATCTCTCCAGAGCTTCTTTCCCCAGAAAGCATG GGATTGAAGCTAAAGCCTATTAAGACACGTGTTTAA
Protein sequence (LotjaGi2g1v0231300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIFRLIFQEHHIRTGCGSVSVIVYGDQHKPALITYPDLALNYMSCFQGLFFCPEAASLLLHNFCIYHISPPGHELGAAAI CPDDHVPSVEDLADQIIEILNYFRLDSVMCMGVMAGAYILSLFAIKYRERVLGLILVSPLCKAPSWSEWFYNKVMSNLLY YYGVCGLLKECLLQRYFSKDVRGNAEVPESELVQACRKLLDERKSINVFRFLHAINERPDITDGLKTLKCRTLIFVGDSS PFHSEAIHMTSKLDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFLMGYGLYRPSFFSDSPKSPLSPSCISPELLSPESM GLKLKPIKTRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 288 | 286 | 2.3E-78 | ||
| PANTHER | 8 | 331 | 324 | 1.7E-201 | – | |
| PANTHER | 8 | 331 | 324 | 1.7E-201 | ||
| Pfam | 9 | 293 | 285 | 8.7E-116 | ||
| SUPERFAMILY | 13 | 286 | 274 | 6.9E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0231300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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