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IPR004142 is a NDRG.
<p>This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted [[cite:PUB00007381]]. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all α/β hydrolases ([interpro:IPR000073]), suggesting that this family may have an enzymatic function.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: pollen-specific protein SF21-like [Glycine max] gi|356535159|ref|XP_003536116.1| | 7 | ||
| – | PREDICTED: pollen-specific protein SF21-like [Cicer arietinum] gi|502138801|ref|XP_004503533.1| | 11 | ||
| – | PREDICTED: pollen-specific protein SF21-like isoform 1 [Glycine max] gi|356564067|ref|XP_003550278.1| | 6 | ||
| – | PREDICTED: pollen-specific protein SF21-like [Glycine max] gi|356520858|ref|XP_003529077.1| | 12 | ||
| – | PREDICTED: pollen-specific protein SF21-like [Cicer arietinum] gi|502138801|ref|XP_004503533.1| | 11 | ||
| – | PREDICTED: pollen-specific protein SF21-like [Cicer arietinum] gi|502125410|ref|XP_004498913.1| | 12 | ||
| – | PREDICTED: pollen-specific protein SF21-like [Cicer arietinum] gi|502125410|ref|XP_004498913.1| | 9 | ||
| – | PREDICTED: pollen-specific protein SF21-like [Glycine max] gi|356506957|ref|XP_003522239.1| | 11 | ||
| – | PREDICTED: pollen-specific protein SF21-like [Glycine max] gi|356506957|ref|XP_003522239.1| | 13 | ||
| – | Pollen-specific protein SF21; TAIR: AT5G56750.1 N-MYC downregulated-like 1; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|C6T7K8|C6T7K8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0366600 | 11 | ||
| – | Pollen-specific protein SF21; TAIR: AT5G56750.1 N-MYC downregulated-like 1; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|C6T7K8|C6T7K8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0366600 | 11 | ||
| – | Pollen-specific protein SF21; TAIR: AT5G56750.1 N-MYC downregulated-like 1; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|C6T7K8|C6T7K8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0366600 | 11 | ||
| – | Pollen-specific protein SF21; TAIR: AT5G56750.1 N-MYC downregulated-like 1; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|I1KJU7|I1KJU7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0231300 | 10 | ||
| – | Pollen-specific protein SF21; TAIR: AT5G56750.1 N-MYC downregulated-like 1; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|I1KJU7|I1KJU7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0231300 | 10 | ||
| – | Pollen-specific SF21-like protein; TAIR: AT5G56750.1 N-MYC downregulated-like 1; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|I1KJU7|I1KJU7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0231300 | 7 | ||
| – | Pollen-specific protein SF21; TAIR: AT5G56750.1 N-MYC downregulated-like 1; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|I1KJU7|I1KJU7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0231300 | 10 | ||
| – | Pollen-specific protein SF21; TAIR: AT5G56750.1 N-MYC downregulated-like 1; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|I1K636|I1K636_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0441300 | 11 | ||
| – | Pollen-specific SF21-like protein; TAIR: AT5G11790.1 N-MYC downregulated-like 2; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|A0A0L9V178|A0A0L9V178_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0040600 | 12 | ||
| – | Pollen-specific protein SF21; TAIR: AT5G56750.1 N-MYC downregulated-like 1; Swiss-Prot: sp|O23969|SF21_HELAN Pollen-specific protein SF21; TrEMBL-Plants: tr|I3SP97|I3SP97_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0213800 | 10 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| TRANSMEMBRANE | Phobius | 1 | 5.26 |