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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0231600 |
| Transcript ID | LotjaGi2g1v0231600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Effector of transcription protein; TAIR: AT5G56780.1 effector of transcription2; Swiss-Prot: sp|F4K933|ET2_ARATH Protein EFFECTOR OF TRANSCRIPTION 2; TrEMBL-Plants: tr|A0A151RGM0|A0A151RGM0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0231600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69079041..69083857) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTAAGAAGAATTAATTGTCACGTTACTCTTTCATAAGATAGAATGGATAATGAAGAAGGAATATAAACATGGAAACT CACGAAGCTTTAAAGGGGACAACGAGCTTCAACAACAACAACAACGGTCATCTCATCACCCAACTGTGACGGCGGCGCAA CCTCAACAATGGTGGCTGCGGCCGTCAACAACAGGTTGAAGAGGGAGCAATGCGACCGCACCAAACACGATTCCAACTTT TCCCATTGGAAGGTTCATCATATATATTATATAATCCTCTGCATCCATAGTTCATGCTTCTTAACTTTTCCAATCTGTAG CAAGATCTTTTTTTTACTTTGACCCAGTTTTTCTGTGATGATTCTTAGTGTTAAATGTTAATTTATTGTAGTTCCAGCTA AAAAATAATTGATTGAAAGTTTTCACACATAGATTGGAGTAAGAGAATGTTGAAACTTGAAAGGGGGTGTGAGGTGTGAT GTGATATAGTTACTAGTTAGTTAAATTGGTTTGAATTTTGATTGATGTAGTTACTAGTTAGTTAAATTGGTTTATTTGAT TGTCAATGTTGGTTATGCTAATGGCTTGCTGCTTTCAGATTCTTATTGGCCCTTCTGATTGGGAGGACTTTTCCAAGGGA AAGGAAGGATCTGCAAGGTACAGGATTCATAACCTTCATAAAAATTCAGGATCAGGAGTTTATGAGCTTGGGATAGCTGT GTCGAGGAGCGGTTTGGGGCGTGAAATTTATAAGCTTGTGGCCGCTGACCCTCAACGCGTTGTTGTGGTTTACCTTGGAG AAGCGGACAATGTGAGAGCGCGGCTCCAGTGTTATGGCAGAAGTGGGGCTCATCTGGGCAATAGCGGCTCGGATGATGCG TCTCCGCAGAAGGGGCGGCCATTGTTTCAGGAGATATTTTCTCAAGGCTTCCCAATTGTTTATAGATGGGCTCCTGTGAG TACAACTCTGTCATTTCAGCTGCATCTTATAATTTATCATGTTAGATGACTGTTGGTTTCAGCATCTTATGTTGAATTCA TAATAAATTCCTTGGTTAGAGTCTTAGAGATATATATTAGTAGGAAAAAATTATGTAGATACACCATGGAGGGTGATTTT AGATTTACAAGTGTGAGTTTGGAGAGTGATGGGCCACATCAAGACAATTATATAGAGAAAACTCAGGTAATCAAGACCTC AAGGTTTTTGGTAAAGGTGTGGTGTCGAGTTCTCATTGTGGCTTGTGTAGCCTTGGCCAATTGACACAGGCGCAGGTCTC GTCCTATCCCCTGACAATATACTCCATCTTAGATGGGAGGAAAGAGATGAGAAGAGAAGAGAAGAGAGAACAATGATAGA TATGATATGCGATGTGATATAAAGAGAGAAAAATGAGGTGGAAGGAAAGTTAGGGTGTCTGGAAATTAGGATTGATATTA TTATGTGTTAGTATGACTCAAAAGAAAGGTTTCTGTGTAATCAGAATTAATTTATTATTGCAGTACTAAGGGAAGTTCAC GGAGGTCAATTAGGTCACCATTTTTCTTAAGTTACAAATTACCAATGCTCATCATTAAACTGGCTTAATTTATCTGCATG AGTACTATCTCATAGCTGATTTGGTAAAATGGGATCTATTATGACAATTTCTAGTTATGTTCAGGCCAACTGTCTCTGAT AAGAATTCTTATTGGAGAACTACTGTCAAAAAAAATCATCACTTTGAAGTTTTGCATTTTGTGAAATATGGCATAGAAGA TTCTAGTAATGTGCATTTGTATCTTACAGAATAGATATATTAAAATGCAAAATTTATAACTTCAATGATTCATTTGTGCA ACTGTTTGTTGAACAGATGCAAAACAAGGAAGATGCTCTGCGAACAGAAGCTCAGCTGCTCGATACATTTGATTATGCAT GGAATACTAGCAATAATGGTACTCGGCGGCCTGATGATATTCTTCGAATGCTAAACAAAATTGCTTCGAGCACCAGAACA TTTTCAGATGTAGCCAAAGTGCTTCTACCTTTCACTCAGAGGCAAGTGGGTATCCAAATTGAATCAAGCAAGCTACCTCT TGCAAATGACAAATCAGATGATGAAGCAGACAGTGGCAGCAATAATTTCCTATCTCGTGTATTCAAATTTAACAGATCAC GTCCTAGGATAGTTCAGGATATCACTAGTGGCGTCATTCAGGAGAATGCTAAAATTTGTGGAGTGACGTTGGGTGATGGT TCTATTTGTAGAAAGCCGCCAGCTGAGAAAAGACTGAGGTGTCCTGAACACAAAGGAATGAGAACAAATGTGTCCACTGC CAAAGCCATCAAAGCACCTGAATCAAAGAGCGTTAGCTACAGATACCAAAATGCCAGCCATGATATAAAAGACCCTCCAC AAACCTTGGTCGAGCGTCCTGTTGATGAGATTATCACCCAGACTAATATATGTGGAATCGTCTTGGATAATGGCTTCCCT TGTAGAAGAGAACCAGTTAAAGGAAGAAAAAGGTGCCAAGAACACAAAGGAATGAGAAGAAATGTGTCCACTGCCAAAGT GATCAAAGCACCCAAGTCAGAGGACATTGTGCTACCCTATGAATTTCCTCAAACAGAGGGCAATGGCTACAGATACCAAA ATGTCAGTCATGATGTAAAAGACCCTCCACAAGCATTGGTTGGGAGTCCTGTTGGTGAGATTATCAACAACACCAATATA TGTGGAATCATCTTGGATGATGGCTCCACTTGTAGAAGACAACCAGTTAAGGGAAGAAAAAGGTGCCTTGAGCACAAAGG GAGGAGAATTCGTGCATCATTTCATGTAAACCAGAGGTAAATCAACAATGCACAATTTCTGCATAATGAAGTTTCAGAAA CTAATAATGCTGAAGTCCAAGTGTTATGCATAAACCACAAATTGAACTCGGTGAATTAAGTTAATGGAAAACAATATGGA TTTAGGTGATGAATTTTTATGTATAAGACAACCTGTTCTATGATGGACAATGTGAAAGCAGCATAAAGGATAGTTTGAAG AAATTGGAATTATTGAAGAAATTGGAGCATCATAACCCAGCAGCTCTCTAAGCAAAAGGATGCAATACCGCAGAGGCATC GTAACCCAACATTTTCAGTTGTTAGTAATAATAAATGGTAATTAGCACTTGGCAGCAGAGGCATTGATGAAATATTGTAT TCCCTTGAAGGATGAATCTGTTTGTGTGACAGCCCTTGCTCGTTGAAGGAATGACTTAGGAGGATAAACCTCTTCTGATT CTCTGTAGCATACATTATCTCATTCCTAGGTAAGGTGTACAGAAATACATGTTGCATCATATTTAACGATGGAATGATAG GTAACTCTTAGTGGGGGTTAGTTAGTTAATGAGTTGGTTAGAGAGAATGAGGAAATCTAAGTAAGAGGGCGAGGGTATCT AGATTGTAATCAGGGACATTTAGGGAGAGTGCTAGTTTCTCAAATACCAGTAGTCATTGACTCATTGTAGTTCCATTGCT ATTCTTGAGAAATAAACAATTTTCTTTTTCATTCATCTCTTGATGGAACTCTGACATGATTTCTCATATACTGTAATTAT ACAGAAGAATTTGTTAAACCCATTAAATCTTGATGCAATTGTTTTATCTGTGCTGTATGAGTTATACTTGTTCATCCCAA TCATATTAATAAATTGCAATGTGGTATTATAGGATTATATAAACTAGTACAGGAGCCGCCAAAGACTTACAGTGACGTAT GCTTGGGCCTCTTGCCATGTGTTATTTACCTCTAACACGGGGTGTTCGGCTAGGAAAGCGGCTATTGTTTGCCCTTCCAC AGCCCTTATTGAGGTGTAATTCAATGCAAAAGCTATTTAACTTGATTGCCCATTCCATCAACCTCCCCCTTAACACTGGT TTGTTCAATAGGTACTTGATAATGTCAATTTTGCATAAGACATTAACTTCTTTAGAAAGGAAATAGTATTCAAGTTTGAT ACATGCATAATACCAGTACATCTAAACTCTGCATCATGTAGTTGCCTTCTCAAATAAAAAATAGTCATACAGTTCCATCT TCAGCCTCCTGAGCTAGCAGGCAGCTGATAGACTCTTATGTCGCGGCTATATACAACTTTAGCGGTTGTCCTAGTTGAGG CGTATCAACATTTTCTGAAGGCTTCTTCTTGTTTTGCCCTCAGGTAAAAAACCCTCACCACATTTCATGCAATGATTCGT TGTTTTAAACTTTGATCATGATTCCTATTGTTTAGGTATAATGTAAATGTTTTCTTTTGCTTTTAGAATTTGTTGCAGCA AGGAAATGATGATTTAATCCTAGAGTTATTAGGATAATATTAAGTTCATCCTTTTAAGTTTTTATATGTGATGAGACTAC TACTTATCGTTATAAATTGAAATTTCAATGAACAATAAACTCGATATCGAATCCACATCAAATTCAACGTGATAAAATCT TGTTTCATCCGTCTACGTTAAACTCAACATGATAAATTCTAGTTCTAGACCTTAAAATACGTGAAACCATATTTATATTT GTACTAACGTGAAACAAAACCTACACTAATCCACAATGATAATTACTTATTTGAGTTATTTAACACTACTCATTTTCATT TGAGACCAAAATGCAACAAAAGAAAGGTATAAAGCCTTCACAATTACACATTTCCTATTGGTTAAACCAAATAATTATAT AAAAAATGAAGCTAAAAAAAAATCACAAAAACATGTCATACTAAATTCTCCTTCTTCACCGTCAAGGTGTTAATCAACTC GTAAACAAACAAGATAC
CDS sequence (LotjaGi2g1v0231600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGCTGCGGCCGTCAACAACAGGTTGAAGAGGGAGCAATGCGACCGCACCAAACACGATTCCAACTTTTCCCATTG GAAGATTCTTATTGGCCCTTCTGATTGGGAGGACTTTTCCAAGGGAAAGGAAGGATCTGCAAGGTACAGGATTCATAACC TTCATAAAAATTCAGGATCAGGAGTTTATGAGCTTGGGATAGCTGTGTCGAGGAGCGGTTTGGGGCGTGAAATTTATAAG CTTGTGGCCGCTGACCCTCAACGCGTTGTTGTGGTTTACCTTGGAGAAGCGGACAATGTGAGAGCGCGGCTCCAGTGTTA TGGCAGAAGTGGGGCTCATCTGGGCAATAGCGGCTCGGATGATGCGTCTCCGCAGAAGGGGCGGCCATTGTTTCAGGAGA TATTTTCTCAAGGCTTCCCAATTGTTTATAGATGGGCTCCTATGCAAAACAAGGAAGATGCTCTGCGAACAGAAGCTCAG CTGCTCGATACATTTGATTATGCATGGAATACTAGCAATAATGGTACTCGGCGGCCTGATGATATTCTTCGAATGCTAAA CAAAATTGCTTCGAGCACCAGAACATTTTCAGATGTAGCCAAAGTGCTTCTACCTTTCACTCAGAGGCAAGTGGGTATCC AAATTGAATCAAGCAAGCTACCTCTTGCAAATGACAAATCAGATGATGAAGCAGACAGTGGCAGCAATAATTTCCTATCT CGTGTATTCAAATTTAACAGATCACGTCCTAGGATAGTTCAGGATATCACTAGTGGCGTCATTCAGGAGAATGCTAAAAT TTGTGGAGTGACGTTGGGTGATGGTTCTATTTGTAGAAAGCCGCCAGCTGAGAAAAGACTGAGGTGTCCTGAACACAAAG GAATGAGAACAAATGTGTCCACTGCCAAAGCCATCAAAGCACCTGAATCAAAGAGCGTTAGCTACAGATACCAAAATGCC AGCCATGATATAAAAGACCCTCCACAAACCTTGGTCGAGCGTCCTGTTGATGAGATTATCACCCAGACTAATATATGTGG AATCGTCTTGGATAATGGCTTCCCTTGTAGAAGAGAACCAGTTAAAGGAAGAAAAAGGTGCCAAGAACACAAAGGAATGA GAAGAAATGTGTCCACTGCCAAAGTGATCAAAGCACCCAAGTCAGAGGACATTGTGCTACCCTATGAATTTCCTCAAACA GAGGGCAATGGCTACAGATACCAAAATGTCAGTCATGATGTAAAAGACCCTCCACAAGCATTGGTTGGGAGTCCTGTTGG TGAGATTATCAACAACACCAATATATGTGGAATCATCTTGGATGATGGCTCCACTTGTAGAAGACAACCAGTTAAGGGAA GAAAAAGGTGCCTTGAGCACAAAGGGAGGAGAATTCGTGCATCATTTCATGTAAACCAGAGGTAA
Protein sequence (LotjaGi2g1v0231600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAAAVNNRLKREQCDRTKHDSNFSHWKILIGPSDWEDFSKGKEGSARYRIHNLHKNSGSGVYELGIAVSRSGLGREIYK LVAADPQRVVVVYLGEADNVRARLQCYGRSGAHLGNSGSDDASPQKGRPLFQEIFSQGFPIVYRWAPMQNKEDALRTEAQ LLDTFDYAWNTSNNGTRRPDDILRMLNKIASSTRTFSDVAKVLLPFTQRQVGIQIESSKLPLANDKSDDEADSGSNNFLS RVFKFNRSRPRIVQDITSGVIQENAKICGVTLGDGSICRKPPAEKRLRCPEHKGMRTNVSTAKAIKAPESKSVSYRYQNA SHDIKDPPQTLVERPVDEIITQTNICGIVLDNGFPCRREPVKGRKRCQEHKGMRRNVSTAKVIKAPKSEDIVLPYEFPQT EGNGYRYQNVSHDVKDPPQALVGSPVGEIINNTNICGIILDDGSTCRRQPVKGRKRCLEHKGRRIRASFHVNQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 320 | 318 | 1.4E-167 | – | |
| PANTHER | 3 | 320 | 318 | 1.4E-167 | ||
| SMART | 78 | 175 | 98 | 0.0018 | ||
| PANTHER | 331 | 385 | 55 | 1.4E-167 | – | |
| PANTHER | 331 | 385 | 55 | 1.4E-167 | ||
| PANTHER | 419 | 469 | 51 | 1.4E-167 | – | |
| PANTHER | 419 | 469 | 51 | 1.4E-167 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0231600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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