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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0232500 |
| Transcript ID | LotjaGi2g1v0232500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT2G05970.1 F-box protein (DUF295); Swiss-Prot: sp|Q9ZUF1|FB99_ARATH F-box protein At2g05970; TrEMBL-Plants: tr|A0A1J7HLP8|A0A1J7HLP8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0232500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69152871..69154323) extracted from Lotus japonicus Gifu genome v1.2.
CGATTGAGGTTTCGATTGAGGCTGATCTAGGAAAATTATGATCTATTCAATGGCGTGAGGAGGAGGGACAAACGGTTTCG CTTGAGGCTGATCTAGGAAAATTGTGATATATTCAATGGCGCGAGGAGGAGGGACAAACGGTTGGTCAGATATTCAACGA GAACTATTGGAAGAGATTCTACGAAAGTTAACATTGGTGGATTTCCTCAAGTGTCGACGAGTATGCCGGTCTTGGCGACG CACAGTTGATGATGCTGTTGCAACCAAGGGAACATGTCCCCATGCTTCTCAATTTCCATTCCTGATGTTACTTCCTTCTA ATTTATTCATCAACAAACCTGCAACCTTTTCTGCCACTCTGTCAGACATCACACAAGAAGAAGACACCTCTTACACTATC CCAACTCAAAAGTGTAATTTTGATTTTGATGTGTTTCGTGTCCTTTCCGTGCAAGGATGGTTGGTGTTCCAAAAGATCTA TTGTAACAAAAACCAGAATCATGCTTTGCTTCTTTTGTTTTCCAATCCAGTGTCGGGTGAAGAGTTTGAGCTCCCACATT TGCCATTGTTTTCAGGTCAGGATTTGAGTCCTGTTCATACTTCTGTTAAACTCGTGTTCTCTTCTGCACCACCATATTCC TCAGACTTTCTTGTGGTGGCTTGTGTTACTGTTACCTTCCAACTACGAGGAGAAGGAGGATATAGATGGATGCAACAGTT AGCTTTTTGCAAGGTCACTGATAAGTCATGGACTTTAATTCCAATTCCAACTGATGATGAATCTCCACCCTTTCCTTTTC ACGAGTTTGCAGTTCTGGATTGGAAATTATATGCTATGAATATGTTTTTATCTCAATCAGGTTCTGTTACTGTTTTTAAT CTCAGAGACTCCACATTTGTAAAGCTGGAACAAGAGCCAATTCAAAAGCAAGGAGGAGCTTTCGTTGAGGGTATGGATTG GTCTGAGTTCATAGTTAATACGGAGACATGTATGTTGACAAGAGATGGGGACCATGAGATCTTGTTAGTTCTTCATCGTA AGAGAAGTAATGAGACAATAGGATTTCGTGTGTTTAAACTTGAGAACATGGGTGACACTAGAACTAGATGGATAGAGGTT GGTGACCTGGGAGATCGAGTTTTGTTGATGGATTACACTGGAATTCAAGTTATCTCTATCAAGGAAATTAACCTTCCTGA AAAGTTGAATGGAGGCAATTGTGTTTTTTTCTGTATTACAAAAGTTGATCTTGGGGTTTTCTTTTTTAAGGACAAGAGAA TTACACGCTCCTTACAAGTAGGTGGGAGTCGATTTTTGTGGTTTATGCCTAGTCTTTGGTAGATATTTATTTCCAATGCA TATCTTATTAATAGATTTTGTTACTCTTGATTTTGCTATGCACTCGAATAATATACTCTTATTTCGAAAAAGAATCGGAT CTTTGGTTTGCTG
CDS sequence (LotjaGi2g1v0232500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCGAGGAGGAGGGACAAACGGTTGGTCAGATATTCAACGAGAACTATTGGAAGAGATTCTACGAAAGTTAACATT GGTGGATTTCCTCAAGTGTCGACGAGTATGCCGGTCTTGGCGACGCACAGTTGATGATGCTGTTGCAACCAAGGGAACAT GTCCCCATGCTTCTCAATTTCCATTCCTGATGTTACTTCCTTCTAATTTATTCATCAACAAACCTGCAACCTTTTCTGCC ACTCTGTCAGACATCACACAAGAAGAAGACACCTCTTACACTATCCCAACTCAAAAGTGTAATTTTGATTTTGATGTGTT TCGTGTCCTTTCCGTGCAAGGATGGTTGGTGTTCCAAAAGATCTATTGTAACAAAAACCAGAATCATGCTTTGCTTCTTT TGTTTTCCAATCCAGTGTCGGGTGAAGAGTTTGAGCTCCCACATTTGCCATTGTTTTCAGGTCAGGATTTGAGTCCTGTT CATACTTCTGTTAAACTCGTGTTCTCTTCTGCACCACCATATTCCTCAGACTTTCTTGTGGTGGCTTGTGTTACTGTTAC CTTCCAACTACGAGGAGAAGGAGGATATAGATGGATGCAACAGTTAGCTTTTTGCAAGGTCACTGATAAGTCATGGACTT TAATTCCAATTCCAACTGATGATGAATCTCCACCCTTTCCTTTTCACGAGTTTGCAGTTCTGGATTGGAAATTATATGCT ATGAATATGTTTTTATCTCAATCAGGTTCTGTTACTGTTTTTAATCTCAGAGACTCCACATTTGTAAAGCTGGAACAAGA GCCAATTCAAAAGCAAGGAGGAGCTTTCGTTGAGGGTATGGATTGGTCTGAGTTCATAGTTAATACGGAGACATGTATGT TGACAAGAGATGGGGACCATGAGATCTTGTTAGTTCTTCATCGTAAGAGAAGTAATGAGACAATAGGATTTCGTGTGTTT AAACTTGAGAACATGGGTGACACTAGAACTAGATGGATAGAGGTTGGTGACCTGGGAGATCGAGTTTTGTTGATGGATTA CACTGGAATTCAAGTTATCTCTATCAAGGAAATTAACCTTCCTGAAAAGTTGAATGGAGGCAATTGTGTTTTTTTCTGTA TTACAAAAGTTGATCTTGGGGTTTTCTTTTTTAAGGACAAGAGAATTACACGCTCCTTACAAGTAGGTGGGAGTCGATTT TTGTGGTTTATGCCTAGTCTTTGGTAG
Protein sequence (LotjaGi2g1v0232500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARGGGTNGWSDIQRELLEEILRKLTLVDFLKCRRVCRSWRRTVDDAVATKGTCPHASQFPFLMLLPSNLFINKPATFSA TLSDITQEEDTSYTIPTQKCNFDFDVFRVLSVQGWLVFQKIYCNKNQNHALLLLFSNPVSGEEFELPHLPLFSGQDLSPV HTSVKLVFSSAPPYSSDFLVVACVTVTFQLRGEGGYRWMQQLAFCKVTDKSWTLIPIPTDDESPPFPFHEFAVLDWKLYA MNMFLSQSGSVTVFNLRDSTFVKLEQEPIQKQGGAFVEGMDWSEFIVNTETCMLTRDGDHEILLVLHRKRSNETIGFRVF KLENMGDTRTRWIEVGDLGDRVLLMDYTGIQVISIKEINLPEKLNGGNCVFFCITKVDLGVFFFKDKRITRSLQVGGSRF LWFMPSLW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 5 | 67 | 63 | 2.75E-11 | ||
| PANTHER | 8 | 405 | 398 | 2.7E-35 | – | |
| Gene3D | 9 | 48 | 40 | 2.8E-9 | – | |
| Pfam | 10 | 46 | 37 | 8.6E-10 | ||
| SMART | 13 | 53 | 41 | 2.3E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0232500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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