Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0233000 |
| Transcript ID | LotjaGi2g1v0233000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetraspanin family protein; TAIR: AT2G19580.1 tetraspanin2; Swiss-Prot: sp|Q9ZUN5|TET2_ARATH Tetraspanin-2; TrEMBL-Plants: tr|A0A0L9VGU5|A0A0L9VGU5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0233000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69184951..69186992) extracted from Lotus japonicus Gifu genome v1.2.
GTCCCTTTTAATCTTCTCTCTACCCATGTTAGTACCTCAAGCTAGTTCTTGAGGATGTTCATTGCACCAAAATATATGAA CCAGTTGGAAAACCAAACCAAAGAAAGAGAAACCCCTCCCACTTCCACAAATTGAATCCCTGGACCAGCATCTTCATATA TCTGCTCCTCCACCAGTCAAGTGTTTAGGTTGCAACCTCAAAGCAGATCAGCAACTGATGGGGGTAAGCAACAACATAAC TGCAGTGCTGAACTTCATAGCTCTCATGGCCTCAATACCCATCATAGCCTCTGGTGTGTGGCTAGCCTCCAAGCCAGACA ATGAGTGCATCCACACCTTCCGCTGGCACGTCCTCATCCTCGGCATTTTCATTCTTCTCGGCTCCATAACTAGCTTCATC GGGGCTTACTGGAACAAACAGGGCCTCTTGGCCTTTTACCTTTGCTGCATGGCCATCCTCATCGCCCTTCTCCTTTTTCT CCTTGTCTTTGCATTCATCGTTACTCGACCCGATGGAAGCTATGCTGTTCCCGGTAGAGGCTACAGGGAGTCCAGGATCG ATGGATTCTCTGCCTGGCTCAGGAACCATGTCACGGATTCTCGGAGCTGGAACAGAATAAGGATGTGTTTGGCTGATTCT GATGTCTGCATTAAGCTCACCCAGGATTACATCACTGCTGATCAATTCTTCAACTCTCATATCACTCCTTTACAGGTCTC TCTCTTTCTCTGCCACCTTTTTCTTCATATCTCATAAAAGTTTATATCTTAATTCTAATTTGTTGACTCTGTTAGTTATT ATTAGTGTTTCTTCTTTCAATTTACTGAGCTCAACTCTACTTTCAGTTGCACTGCAAATCAAGCTCTTACTTCCTCACAG ATCAGCCAGTGGTTTTCTCTTTCTTCCCTAGAAACAAACTAGATATAGATTATAAAAATATATGCTTGGGTCAAAATCAC CGTAGACAGAAACAATTTTCTTTAGCTTATTGATTGTCCACTGTGATTTTACCTTCACTGCGATTTGTTTTCTAAACAGG CACTAACATGTCACCATGTTATATGCTCAAAAAACTTTTAATTGCTGATCTTTAGAGTTCTTAGAAGTTAGAAACATACA TAGGAGGTCACATTATGCATAGAGGATGAATAAACTGTTACTTTCACTGATAGGTTTTAAATTGCTTGGATTTTCCACAT CACAGTTTTTTTGTAAGATCAGATTGACACTAACTGTAATTGAAGCAGGATAACCTGGTACTAGGATAGGAAGTATGGTT GTGCCCTTAGAAAAGGTCTATACCAGCTGAAAAAGCTACTAACTGATTCACTTAAAGAGAAATTGTGCAATTTTATATCA GAATAAAGTAATTAGCCAAGAATAGTTAAGTTCATCTTTTTTGTTTCTATTGCACATGATAATAAAAGTCTTGCTATTGT TGCCAGCTTGTGGCCTCTGTATTTAGATTTGTTTGCTTTAACTCTCTTCTTTGTCATATTCCTGTCTTTACTTTTTTCCT TGGAAAACAAAACTTTTCATTACTCTTGTTAATTCAATTCCTTCTATTGGTTTAAAAGTCAGGGTGTTGTAAACCTCCAA CTGCTTGTGGGTACAATTATGTGAACCCAATACTTTGGATAAGCCCTGTGAATCCTATGGCAGACCCAGATTGCTACTTA TGGAACAATGACCAGAACCAGCTCTGCTACAACTGCAATGCATGCAAGGCAGGTCTACTTGGGAAGCTCAGAAAAGAGTG GAGGAAAGCCAATATCATCTTGGTTGTGGCTGTGGTGGTTCTTATCTGGGTCTATCTCATTGCCTGTAGTGCCTACAAAA ATGCTAAAACAGAAGACCTCTTCCGCCGCTACAAACGGGGTTGGGTTTGATCCATTTTCCTCCCGATAATCTAGAACTTT CAAATTAGAGCATTTTTGGATTGGCTTCTCTTCCATCAGAATCAATCATGGAAGTCGGACGCAACTTACATAACCTTCCC TCCATGATTGACTCTGACTTTAAAATTAATTGTAGAAAGATG
CDS sequence (LotjaGi2g1v0233000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGTAAGCAACAACATAACTGCAGTGCTGAACTTCATAGCTCTCATGGCCTCAATACCCATCATAGCCTCTGGTGT GTGGCTAGCCTCCAAGCCAGACAATGAGTGCATCCACACCTTCCGCTGGCACGTCCTCATCCTCGGCATTTTCATTCTTC TCGGCTCCATAACTAGCTTCATCGGGGCTTACTGGAACAAACAGGGCCTCTTGGCCTTTTACCTTTGCTGCATGGCCATC CTCATCGCCCTTCTCCTTTTTCTCCTTGTCTTTGCATTCATCGTTACTCGACCCGATGGAAGCTATGCTGTTCCCGGTAG AGGCTACAGGGAGTCCAGGATCGATGGATTCTCTGCCTGGCTCAGGAACCATGTCACGGATTCTCGGAGCTGGAACAGAA TAAGGATGTGTTTGGCTGATTCTGATGTCTGCATTAAGCTCACCCAGGATTACATCACTGCTGATCAATTCTTCAACTCT CATATCACTCCTTTACAGTCAGGGTGTTGTAAACCTCCAACTGCTTGTGGGTACAATTATGTGAACCCAATACTTTGGAT AAGCCCTGTGAATCCTATGGCAGACCCAGATTGCTACTTATGGAACAATGACCAGAACCAGCTCTGCTACAACTGCAATG CATGCAAGGCAGGTCTACTTGGGAAGCTCAGAAAAGAGTGGAGGAAAGCCAATATCATCTTGGTTGTGGCTGTGGTGGTT CTTATCTGGGTCTATCTCATTGCCTGTAGTGCCTACAAAAATGCTAAAACAGAAGACCTCTTCCGCCGCTACAAACGGGG TTGGGTTTGA
Protein sequence (LotjaGi2g1v0233000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVSNNITAVLNFIALMASIPIIASGVWLASKPDNECIHTFRWHVLILGIFILLGSITSFIGAYWNKQGLLAFYLCCMAI LIALLLFLLVFAFIVTRPDGSYAVPGRGYRESRIDGFSAWLRNHVTDSRSWNRIRMCLADSDVCIKLTQDYITADQFFNS HITPLQSGCCKPPTACGYNYVNPILWISPVNPMADPDCYLWNNDQNQLCYNCNACKAGLLGKLRKEWRKANIILVVAVVV LIWVYLIACSAYKNAKTEDLFRRYKRGWV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 268 | 268 | 2.5E-146 | – | |
| PANTHER | 1 | 268 | 268 | 2.5E-146 | – | |
| Phobius | 6 | 31 | 26 | - | – | |
| Pfam | 7 | 250 | 244 | 1.2E-25 | ||
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 32 | 42 | 11 | - | – | |
| Phobius | 43 | 65 | 23 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 66 | 70 | 5 | - | – | |
| Phobius | 71 | 95 | 25 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| Phobius | 96 | 231 | 136 | - | – | |
| TMHMM | 230 | 252 | 23 | - | – | |
| Phobius | 232 | 253 | 22 | - | – | |
| Phobius | 254 | 269 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0233000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…