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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0233200 |
| Transcript ID | LotjaGi2g1v0233200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PRA1 family protein; TAIR: AT1G55190.1 PRA1 (Prenylated rab acceptor) family protein; Swiss-Prot: sp|Q9C889|PR1F2_ARATH PRA1 family protein F2; TrEMBL-Plants: tr|A0A151RGM7|A0A151RGM7_CAJCA PRA1 family protein; Found in the gene: LotjaGi2g1v0233200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69216601..69217681) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGATCCAATAAAAACATGCTATTGAATTAAATTTAAGTATTACTCAACAAATACAAAATTGAATTTCAACGGTTGAA AGCAAGGATTGAACGGGACAGGAAATGAGACACGAATTTGGGACAGAGGATCTAGATCTTGATAGTAAATAGCCTTGTTA CATTTACCCAAGAGGAAGTAACAACCAAATTACATTCACTACTCTCATTCTTTCTCTAGGAAAATGACTACATATGGAAC AATCTCAGAGGAATCAGAGGTTTTATCTGATTCAAACCCATTCTTATCACAAGTAACCAAAGATCGAATCGAGGCGGGTC TAGGCACAACAAGACCATGGAAGGAAATGATCCAACCTTCACATTTCAAACTCCCACCATCCTTCTTCGGAGCAATCCAA AGAGTCAACACAAATGCGAAACATTTTCGCGCGAACTATGTGATCATCATATTGCTAGTGCTGTTCCTCAGTTTACTAGG ACATCCTATTTCCCTGATCATCTTAGTTGTCATGATGATTGCATGGCTGTTCTTGTATTTCCTAAGAGACACCCCTTTGG TGATCATGAGGTTTCAGATCGATGAGAGGTTGGTGGTTATCTCTTTGCTGTTGGTGACCGTTGGTTTGCTTGTTCTAACG GATGTGACACGTAATGTGACAGTAGGTATGTGTGTTGCATTGGTGGTTGTGTTGGCTCATGCTGTGATGAGAGAAACAGA GGATCTGTTCACTATGGATGAGGATGTAGAGATTGTATCTGGTGTTAGAGAGGTTGTCAAAGTCCCTCTTAGGCAACCTG GTTCATCTTCTTTTACATTGCCTTAGTTATCATACTAACAACAAGATTTCTTGTCACATAATTGAGTTTATTCCCTCCTT GATTGATTCTTGATTGTCCAATATATTGTTAATCCAAATTTGAATGGCTTTGTTATCAATTCTCTGATGCTCTATTAATT CCTTGATGTACTATAAGTAAGACTGGATAATTGAGAATATTATTCAACCTCATTGGGGGTAAAACTAGAATTCAATTCCA TGAAGGTGATCATAATCATTTTGTAGTTTTGTGAAGTCAAT
CDS sequence (LotjaGi2g1v0233200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTACATATGGAACAATCTCAGAGGAATCAGAGGTTTTATCTGATTCAAACCCATTCTTATCACAAGTAACCAAAGA TCGAATCGAGGCGGGTCTAGGCACAACAAGACCATGGAAGGAAATGATCCAACCTTCACATTTCAAACTCCCACCATCCT TCTTCGGAGCAATCCAAAGAGTCAACACAAATGCGAAACATTTTCGCGCGAACTATGTGATCATCATATTGCTAGTGCTG TTCCTCAGTTTACTAGGACATCCTATTTCCCTGATCATCTTAGTTGTCATGATGATTGCATGGCTGTTCTTGTATTTCCT AAGAGACACCCCTTTGGTGATCATGAGGTTTCAGATCGATGAGAGGTTGGTGGTTATCTCTTTGCTGTTGGTGACCGTTG GTTTGCTTGTTCTAACGGATGTGACACGTAATGTGACAGTAGGTATGTGTGTTGCATTGGTGGTTGTGTTGGCTCATGCT GTGATGAGAGAAACAGAGGATCTGTTCACTATGGATGAGGATGTAGAGATTGTATCTGGTGTTAGAGAGGTTGTCAAAGT CCCTCTTAGGCAACCTGGTTCATCTTCTTTTACATTGCCTTAG
Protein sequence (LotjaGi2g1v0233200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTYGTISEESEVLSDSNPFLSQVTKDRIEAGLGTTRPWKEMIQPSHFKLPPSFFGAIQRVNTNAKHFRANYVIIILLVL FLSLLGHPISLIILVVMMIAWLFLYFLRDTPLVIMRFQIDERLVVISLLLVTVGLLVLTDVTRNVTVGMCVALVVVLAHA VMRETEDLFTMDEDVEIVSGVREVVKVPLRQPGSSSFTLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 199 | 199 | 1.3E-109 | ||
| Phobius | 1 | 67 | 67 | - | – | |
| PANTHER | 1 | 199 | 199 | 1.3E-109 | – | |
| Pfam | 33 | 172 | 140 | 1.2E-41 | ||
| Phobius | 68 | 85 | 18 | - | – | |
| TMHMM | 70 | 104 | 35 | - | – | |
| Phobius | 86 | 90 | 5 | - | – | |
| Phobius | 91 | 107 | 17 | - | – | |
| Phobius | 108 | 118 | 11 | - | – | |
| TMHMM | 119 | 138 | 20 | - | – | |
| Phobius | 119 | 139 | 21 | - | – | |
| Phobius | 140 | 144 | 5 | - | – | |
| TMHMM | 145 | 162 | 18 | - | – | |
| Phobius | 145 | 162 | 18 | - | – | |
| Phobius | 163 | 200 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0233200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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