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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0236300 |
| Transcript ID | LotjaGi2g1v0236300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ferredoxin-thioredoxin reductase, variable chain; TAIR: AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2; Swiss-Prot: sp|P80680|FTRV_MAIZE Ferredoxin-thioredoxin reductase, variable chain; TrEMBL-Plants: tr|I3T384|I3T384_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0236300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69690242..69694851) extracted from Lotus japonicus Gifu genome v1.2.
TCTCATCCAAAAACCATTAATAACAAATATTAATATTACTATCATATGTTATTTATAAGATAGAAAAGGAACGATCAAAC AGAAAATGAAATCAATCCAATTCAACATGAGCACCATAGCGATTGCGATGGCTCCCTCTTCACCACTGCTCAGCGTTTCC CCAAATCGCTCATCGATGCTTCTCCTCACCAAATCGATTCCATTCTCTTCATCTTCTTCAATTCATCCTCCTCTATTCGC AAATCTCAGAGGCAGCAGCAGAAGCATTACGCGGTGCGAGGTCGCCGTGGAAGAATCATCGCCGTCGTCCACTTCCTCAT CATCGGAATCGGAAGAAGCGGAATCATCGAAGGTCGGAGCGCGTGTTAGGGTGAAGGTTCCGTTGAAGGTGTACCATGTG CCCAAGGTTCCGGAGTTCGATCTTGAAGGTGCGGAAGGGGAGATCAAGCAGTACGTTGCGCTATGGAAGGGTAAGAAAAT CTCTGCTAATTTTCCTTATAAGGTTCAGTTTGTTACTGAAATTGAAGGTCGTGGTGCTGTCAAGTTCTTTGCGCATCTTA AGGAAGATGAGTTTGAGTTTCTCTGAGTTCAGTGAAACCCTATTATGTCTTAATTCTAGTTCTGTTACACTAAATCTATG ATTACTTTGTCATTATTGAATAGTAAATAATGAAATGATCCATGTGCAGTGTTGTTGTATGTGTAATCTTGCTCCATTAA CTTTTTTATTTTTGTTTTAATTAATAGTTGCTATTTTAATCATTGCTATGGTCTTAATTTTGATTAGATTCTAGTTTCTA GCTGATGGGAGCTTTTCAACTGAGATTAGTATTTGGTTTCGTACTTGCGAAAATGCTCTTATAGTTTTGTGAGTGCTTAT AGTGAAGTTTGAAAGAAGTTGGAAATGGATCACCTCATGTTACAATGACACTGTCATGTTAAAATTTGACTTATCTCGCT CTTCGTAACGGAGAGAAATAGATACAAAATCTTAAGGCGTGTGAAACTTCAAACATGAGAGAATTTTGATTTGAATAAGT TAGATGATAGAGCTTCTGAAAATATGAGGGAGTTGGGTTAATTTTGACTTGTGCGATTCATTTTAGTTTCTTTTTCTTTT TCTATTTTGTGCTTGTCGAGAAGTGTATCCAATCTGATTTGTGATATGATCGATCCACTTGAATTTTTACTCTATTTTGT TTTGTTATTCTTCACTAATGATGTGGTTGTGCCTTGTTGGAGAGTTTATATTTAGTCCTTGTTCTAAGTAATGAGATCTT GCTTCCTAAGGATTCTACTTTTGTGGCTCCTTTGAGATCTTGTCATCTGTTGTCTTTCTGATTAGTGGCTTAGAATTTAG TAATGTGTAAAGGCACGCACCACGGACAACTTGAGCTATGTACAGGGGTGAAACAAAAAATCAGCTTATGTTGATGTTAG ATGGCTAATTCCTTTGTTGCATGTTTGGATATAGGAGGGGAAGGGAAGAGAATGGTGGTTGAGTTGTGGTTTTCCTTCCA TTTGATTGGATATTTAAGAATTTCCCAATTTGTGGGAATTTAAGAATTTTTTAAAGATTATATAAGGAGGGTTTCAACTA AAGAATCACATAAAAAATTTATTGACTTCTCTTCATCTTTTTTGTATAAAAAATAGTAATGCTTTCTTGAAAGCTTTCAT ATTCCTTCTATTACCATCCAACATCCAAACATAAGGGTGGAGAAGGAAAGAAAGAAATTAAAGAAAATAGGCAAGGAAGG GAAATGAAGAGAATAGAGAGAAATGATTTTGAAAAATGCATGAAAGTGAATGGGGGAGGTGGGGTTAATTTAGAGGATCA TATGAGTGCTTCTCATTGTCTTCCTTGTTTTATCAAACACCTAGACTAGTGAGGTTTGCTTAAAACCCTCTTTTCACTTC CCTTCTCCTCTGATCGAACATACCCTTAAAAGCATTTATGTTGTATTCAGTTAAGATTATTCCAAGTATTAGCTTCTGGT TTTTACATGATGACCATTTCATCTATGTATTGAACTCAACAATTCAAATAATGTTTTGTGTCTGCATGGGATATGCTATC ACTGTTGGAAGCTATCCATATAGAAAGGAGAAAGGCTAACTGAATGTTATGAATTCATCTTAGGCAGTCATTACTAAACT TGTTTAGACTTCAAGCCCTTTTGTTGCTGCTTTCATTTTTCAACGTTTTATCTTCCGTTTTATCTTCCGATACATGACTT ACAGAACTATATAAGATAATTATAATCTCTTCGAATTTTATGAATTGAAGTCCTTAGATACTTTGAAGGGAGTTAGCCTC AATCATTCTAATATTTTTTAGCAGGTGTCTGTTTATTTGATAAAAACAATGGCATCTTCTGTCAATCTGTCTTTTGAACC TATAATTTGCATTATTTTAAGGCTAAACTCAGGTGTTTTGTATCCTATCCACGAACTGGAAAGAAGCAAATATTGTTATT TCAGTTGGTTCTTTGATGATGTGTATTTACAGAATTTCATCTAACCTTATATACTGATAGTCAAGTAGCTGTCTTGAATA TTTCTTAGTGATATTTGAAGTTTTTGGCTTGTTCACTTAATGACAAATCATAAATATGAATAGATTTAGTTCAGTTGGAT ATAATGGAGGCTTGTTATTGTTGGCAGAAATGAATTACTGTTTTAGATGATTACATCTTTTGTTTACGAAATTATTGATG TCTAAGTATCTTTGGTTTTGCTTCCAAGTCATGTTTACAAACTGTGTATGTTTTTTTTCCTTCTAAAAATGGAGTAATGG GATTTTACACTTAGTTAGAATGAAATCGTTTTTTTCAGTGAATTCGTAGATTTATGCTTTTTCCTGTTCCCATGTTAGTT TCATCGTGTGAATAAGAAATATTTTTCGAAGTAGTCTAATATTGCATTGCCTATTGACATAAAAAAATAATAATAAAAAA CTCTTATTAGCATTTCAGTTAGAGGAATGCTACTGATATTAATTTTTAATAGTCTCTTTTCAACGCATTCTAGTTGAAAT TTACGTGGGGTTAACCAAATTATATGGGCTTTTATTTCATTTTAGTGAGATCCATATGAAATTTAACCCATAAGCTAGTT TAAAGAAAATAATGATCAGTTGTAAGTGTCGTTAGACAATCCTCCGAATAATGAACCATTGAAAAAAAAATCCTGTTTTA AATAAATCAAGAGGATTAGCTACTCGTTTGATAAAAAAAAACTGAGATGCCAAAGAAATTGTTTGTCTCTACTTTATTAT TCTATGAGTAATTTCTAAAGTATAAAAATGATTAGATTATTAAGCTATTTCCATAATTTAATCTAACTCCGTGGATTGAA TGATGGCTCATTTTCAGTGTCTCCATCCAATTCATTTTGCGATCATTTTCTCTCTTCTTTTTATGCGTTTAATAAGTCCT GCTGATTTTATGTCTAAGTATGCTTTTTCTTTTGTTGATAATGTATGGATTGAGGAAGGTCCACGGGGTCTAGGATCAAT ATTTTGGTACTTCATTTGTTATAGTTAATTGTTCGTTATCCCCATCCTCATCCCATCACGACATCATTTCTATAGGAGGA AACAATAAAAAAATTATGGAAAGAGAGCCGATGACTCTGATTTATGATAGGATGTGCCATTCCCGGAAAGGTAAGGATAG CAGGCCCCTTTACTTTTTCTTTTTTAAATACACCGCCCGTCACACCCCGGGAATTGGTTTCGCCCGAAGCATCGGACCAA TGATCACCCATGACTTCTGTGTACCGCTAATGCCACAAAGGCTTTTGGTGGTCTTATTGGCGCATGCCACGGTGGGGCCT TTGACTGGGGTGAAGTCGCAACGAGGTAGCCGTAGGGGAACCTGTGGCTAGATTGAATCCTTCGCGATGGAAATGCCCTC TTCCCCCAACCTACGGGGCGGGGTTGATGGAATGCGGGGGGGCTTTGGGTCCAGACGGAGACCAGGGCAAGTCAAAAAAG AAAATCGTTCCATTTTCCCTTCCCTTTCGGTCGAGCACTTCGTTCCTTCTTGTTCATCAATCGCAAATCAAGACAAACTA GGCACTACGGTGAGACGTGAAAACACCCGATCCCATTCCGACCTCGATATGTGGAATCGTCTTGCGTCATATGTACTGAA ATTGTTCGGGAGACATGGTAAAAGCCCGGAAAACGGATAAGAATCAAACGTCGTAAATGCAGAGCGCAGATAAGCATTAA TGCATTAAAAGAGAGAGAGAGATTGCCAACCTCTAGGGAGCGCACCAAGGCTGCCGAGCTTGTTCTTATCTCTCTCATAT GTACCATCTAATGGTCTTCGTGCCAGAATGTGGCACCAAAGGTGGATCCTGAAATTTTCTTCGGGAGCTAGGGAGTGAAG TGATCCCTAATTCCCTATCACTAGAGAAAATAGGAATCGAAGGAGATCAGCCCGACAGAATAGGAAGGCAAGTCTGTAAC GGAAGCAAGCTCGCTAGCAAGACATTGCAGGGATGCAAGGATGTCTTTTCTGCCTTAGCCATAATAGGAATAAGAATCTG CTGGATCGGATGCCACCGTGGCCGCTGGAATAGCTTTTTTTAGTCCAGTT
CDS sequence (LotjaGi2g1v0236300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATCAATCCAATTCAACATGAGCACCATAGCGATTGCGATGGCTCCCTCTTCACCACTGCTCAGCGTTTCCCCAAA TCGCTCATCGATGCTTCTCCTCACCAAATCGATTCCATTCTCTTCATCTTCTTCAATTCATCCTCCTCTATTCGCAAATC TCAGAGGCAGCAGCAGAAGCATTACGCGGTGCGAGGTCGCCGTGGAAGAATCATCGCCGTCGTCCACTTCCTCATCATCG GAATCGGAAGAAGCGGAATCATCGAAGGTCGGAGCGCGTGTTAGGGTGAAGGTTCCGTTGAAGGTGTACCATGTGCCCAA GGTTCCGGAGTTCGATCTTGAAGGTGCGGAAGGGGAGATCAAGCAGTACGTTGCGCTATGGAAGGGTAAGAAAATCTCTG CTAATTTTCCTTATAAGGTTCAGTTTGTTACTGAAATTGAAGGTCGTGGTGCTGTCAAGTTCTTTGCGCATCTTAAGGAA GATGAGTTTGAGTTTCTCTGA
Protein sequence (LotjaGi2g1v0236300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSIQFNMSTIAIAMAPSSPLLSVSPNRSSMLLLTKSIPFSSSSSIHPPLFANLRGSSRSITRCEVAVEESSPSSTSSSS ESEEAESSKVGARVRVKVPLKVYHVPKVPEFDLEGAEGEIKQYVALWKGKKISANFPYKVQFVTEIEGRGAVKFFAHLKE DEFEFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 8 | 8 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 14 | 14 | - | – | |
| Phobius | 9 | 16 | 8 | - | – | |
| Phobius | 17 | 23 | 7 | - | – | |
| Phobius | 24 | 166 | 143 | - | – | |
| PANTHER | 28 | 166 | 139 | 4.5E-57 | – | |
| MobiDBLite | 65 | 90 | 26 | - | – | |
| MobiDBLite | 65 | 85 | 21 | - | – | |
| Gene3D | 88 | 166 | 79 | 6.0E-32 | – | |
| SUPERFAMILY | 89 | 166 | 78 | 5.77E-25 | ||
| Pfam | 90 | 162 | 73 | 1.8E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. |
Expression pattern of LotjaGi2g1v0236300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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