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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0237600 |
| Transcript ID | LotjaGi2g1v0237600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serpin-like protein; TAIR: AT1G47710.1 Serine protease inhibitor (SERPIN) family protein; Swiss-Prot: sp|Q40066|SPZX_HORVU Serpin-ZX; TrEMBL-Plants: tr|M5XDT7|M5XDT7_PRUPE Uncharacterized protein; Found in the gene: LotjaGi2g1v0237600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:69843999..69845048) extracted from Lotus japonicus Gifu genome v1.2.
AAATCTTGGGATGAAGTGCTTGTATGAAAATTAAGAACCATATAAAGTTATTATATTCTGGTGATTGATTTAAAATTTGA TGGTGGTTTTAAAGGCGGGTAAAGTGGTGGACGAAGTTAATTTATGGGTTCAGAAAGAGACAGATGGCCTTGTCAAAGAC CTTGTTAATCCTAGGTCAGTTAACAGCTCAACCAGACTCATTTTTGCAAATGCATTGTACTTTAAAGGTAAATGGTTTGA GAAGTTTGATGCTTCAATGACAAGAAACTATGATTTTCACCTTCTTAATGGCACCTCAGTCAAGGTTCCCTTCATGGTCA GCAAGAAGAAGCAATTCATTAGTACTTTTAATGGTTTCAAAGTCCTTGGTTTGCCTTATAAGCAGGGTGAAGATAAGCGT CGGTTTTTCATGTACATTTTTCTTCCAAATGCAAAAGATGGGTTGTCTGCTTTGGTTGCGCAGTTGACTTCAAATGCTAG GTTCTTCGAATCCAAGCTTCCTCGTCAAAAAGTGGAAGTAGGTGACTTCAGGATTCCCAAATTCAAAATTTCTTTCGGGT TTGAAGCTTCTGTTGTTCTAAAGGAGCTGGGAGTGGTTTTACCTTTCTCATCCAAATCAAATTTGAGAAAAATGGTGGAT TCTGACCTATATGTTTCCAACATATTTCACAAGTCTTTCATTGAAGTAAATGAAGAAGGCACTAGAGCTGCAGCAGCAAG TGCGGGTATAGTATTAAAGAGGAGTCTGTCGCCAAGGCCGACTCGGGTTGACTTCGTAGCTGACCACCCTTTCTTTTTCG TGATCAGAGAAGAGATGACTGGAACAATACTATTTACAGGGCAGGTGCTCAATCCACTTGTTAGGTGATGAAAACATCAT TAGTGAAACTTAAGCCCTTATTCTGTTATCTTTATTTTTCTTATGGTCCTGTTAGTGAAACTTCCCTTATTCTGCTATCT TTGTTTTTCTTATGGTCCTGTTATTAGAAATGGTTTGACGTGAGACACATGGATCAGCTTTACAATTTTCATTGCTAACC GTTTTTAATA
CDS sequence (LotjaGi2g1v0237600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGTTTTAAAGGCGGGTAAAGTGGTGGACGAAGTTAATTTATGGGTTCAGAAAGAGACAGATGGCCTTGTCAAAGA CCTTGTTAATCCTAGGTCAGTTAACAGCTCAACCAGACTCATTTTTGCAAATGCATTGTACTTTAAAGGTAAATGGTTTG AGAAGTTTGATGCTTCAATGACAAGAAACTATGATTTTCACCTTCTTAATGGCACCTCAGTCAAGGTTCCCTTCATGGTC AGCAAGAAGAAGCAATTCATTAGTACTTTTAATGGTTTCAAAGTCCTTGGTTTGCCTTATAAGCAGGGTGAAGATAAGCG TCGGTTTTTCATGTACATTTTTCTTCCAAATGCAAAAGATGGGTTGTCTGCTTTGGTTGCGCAGTTGACTTCAAATGCTA GGTTCTTCGAATCCAAGCTTCCTCGTCAAAAAGTGGAAGTAGGTGACTTCAGGATTCCCAAATTCAAAATTTCTTTCGGG TTTGAAGCTTCTGTTGTTCTAAAGGAGCTGGGAGTGGTTTTACCTTTCTCATCCAAATCAAATTTGAGAAAAATGGTGGA TTCTGACCTATATGTTTCCAACATATTTCACAAGTCTTTCATTGAAGTAAATGAAGAAGGCACTAGAGCTGCAGCAGCAA GTGCGGGTATAGTATTAAAGAGGAGTCTGTCGCCAAGGCCGACTCGGGTTGACTTCGTAGCTGACCACCCTTTCTTTTTC GTGATCAGAGAAGAGATGACTGGAACAATACTATTTACAGGGCAGGTGCTCAATCCACTTGTTAGGTGA
Protein sequence (LotjaGi2g1v0237600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVLKAGKVVDEVNLWVQKETDGLVKDLVNPRSVNSSTRLIFANALYFKGKWFEKFDASMTRNYDFHLLNGTSVKVPFMV SKKKQFISTFNGFKVLGLPYKQGEDKRRFFMYIFLPNAKDGLSALVAQLTSNARFFESKLPRQKVEVGDFRIPKFKISFG FEASVVLKELGVVLPFSSKSNLRKMVDSDLYVSNIFHKSFIEVNEEGTRAAAASAGIVLKRSLSPRPTRVDFVADHPFFF VIREEMTGTILFTGQVLNPLVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 259 | 259 | 1.2E-30 | ||
| Gene3D | 6 | 205 | 200 | 8.2E-84 | ||
| PANTHER | 7 | 260 | 254 | 1.5E-97 | – | |
| PANTHER | 7 | 260 | 254 | 1.5E-97 | ||
| Pfam | 8 | 259 | 252 | 1.4E-75 | ||
| SUPERFAMILY | 8 | 259 | 252 | 1.2E-77 | ||
| Gene3D | 52 | 254 | 203 | 8.2E-84 | ||
| ProSitePatterns | 232 | 242 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular space | That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. |
Expression pattern of LotjaGi2g1v0237600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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