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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0239800 |
| Transcript ID | LotjaGi2g1v0239800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein; TAIR: AT3G01600.1 NAC domain containing protein 44; Swiss-Prot: sp|Q6NQK2|NAC8_ARATH SUPPRESSOR OF GAMMA RESPONSE 1; TrEMBL-Plants: tr|K7KNP9|K7KNP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0239800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70081862..70086795) extracted from Lotus japonicus Gifu genome v1.2.
CTCGGACTCATTTCGTTGCTTCGGTCTCCTCTCTCTCTCTCTCTCTCAGTGACACTCACTCTCTCTGTCTCTCTCTTACT GTACTACCTTACTTCCTTGCTACGACACCTTCTTTAAATACTCACTATCATTCCACAAAACGCGTTTTTCTCTTCTGTCC TTCATTTGCACCCTTCTTCCATTGCAATGGCTAGGTGAGCTTACATGAGCAGATTGCAATGAAAGTTTCATAGTTCAGCT TGAAAGTTTGCAACTCTGGATGTTTTCTTAGAACCCCATTTTTTGTTTTCTCTTCATCTTGTGAATTTAAACTGAAAACT GTTTTGAAAACCGCAAACAAACAGTCTTGTCATGAAAATCCAATTTTTCTGTTCTGGGTAGTATTGTTCTGCAAACTTGT GTCACAGGAGGAATGTTCACTTTGTTGCTTGTTTTGGTAAAATTAGTCAAGTACACTGATCTAGATAGATTCTGGAGTGT TACATCACGTGGTTGAGTTTTGGCTTGTGGGGTTGATGACTTGATGTTGTTATGAAGGACAGTATTTATGGACTTTTGTT CATATATGGATAGCAAATGAGTGGGAACAGTGTTAAAGTGTAATCTGATACCCCCATTTGGATTTTGGAATCTTTGCTGC CTAATTTGGAAAAAACTTGTTGTTCCTTTCTACAACTGGTAATGCATTGTGGAAAGAAACACTTGTGAAGTACTAATGGC ATGCTTGGATCATTTTTTCTTCTTCTTTGGGAATCAATTCAGATAACCAGAAGAAGTTACTTATAGAAGCTTCTCCCTCA AATTGATTTTGACTTCAGGGTCAACTTGAGTTGTGGTTTTCTGGATGATTGAAATATAGTCATTTGTCTTAGGGGTGTGA TCATGTGGTGTAATGTGATTTGGGACTGATTTGTGTTGGAGAAAAACTTGATGTTCCCAAGCCCCCATGTTTAAGCTTTT GAAATCTCACTGGCTGTAGCACCACCTAGACCTTGTGTTCATTTTGAAATCTCACTGGCTGTAGAATGAATTGCTACTAT CACAGTCTTTAGAGTTTGCTGCACTATGGGGGCCAGAATCTATGACAAGACATGGATTTTTGTTCCCAAAGGGCCTTCTT TGATGATGTCTGCATTCTCTTCCTTTGTCTTCCTCTTTGTTTTCTTTTAGCTGGTTGGAGCTCTTGTGTTTGGATATCAG TGGAGTGCATGAATCTAAATGTACTTTCATTCAATCCATAACGAGAGTATCATTCTCTTTTCATGCTAACATCCATTTAT GTTGGTGTCAATGGATATCCAAACATAAATCATTGGTGCTATTAAACACTCTCAAATCCCATCAAACTTTCATCTAAAGC CCTACGTCCAGTTATTTTTATGAGTTCCTCAAAATTTGGGGATTTAGTGGGATTTTCAACTTTCTAATAAAGGGAGAGCT TACCCTCACTTCCCCCTTTCTTACCATTTCTTCGCCTTCCTCTCAGAATTTTCTTTTTTGCTCACCTAAAAAACTCTCAA ACAAAGCCTAAGACATCTTCAAAAATTTTAGTTTCACAAGCTAACTCGTTGAGTCCTTCATGTGAACTGTTGATGAATTA TTGTTTTTCTCTTTGCTTTTATGTTTTCAGCAACCATGTTTCTTTTCTTTCTGTATTTGAACCAAACATCCCTTAACTTC ATATCTATATGATGTTCTTCAAGTAAACAATGTGTCATTTTGAATGAATGCTGATCTAACTCAACTAAGATTATATTTGT TTTGCAGAAGCTGGATTATTGACTTTGGATCATTTGCAAAGAAAGTGAAAAACACTAATCTGTCAACAGTTGATCAAATC AAGGACTGTGGAGCATATCTTGATTGTCCAAAATGTCATTATCGGATCGACAACAGTGATGTATGCTAAAATTCAACTTA AGATTCAGTTTTTCATCCAGTAGTTTTCAAATTCACACATCCACCAAAATAGTAAAATGCTATAAGCCTATAAGTCTCAC AGTAAAAGTTCTAGGTGTTACCATGGAGTTTGTGCATGCTCCAATTCTCCTAACCTACATTTTTCTTCATTTGGCTTAAG CAATTAATTTAAGTACTTAAAGTTAGAAGTTTGCAAATTTTACCTTCATACCAGGATTAAACTCTGGAAAATGTTAAATT TAAGTTTTGACTGATTCCTTTTCCTGTGTAGGTTTTTCCGGAGTGGCCTGGCTTTCCTGCTGGTGTAAAGTTTGATCCTT CTGATGTTGAACTTTTAGAACATTTAGCAGCAAAGCATTGTATTGGAGACAGAGTGGCACACATGTTCATCCATGAGTTT ATCCCAACTCTAGAAGGAGATCAAGGTATTTGCTACACACATCCAGAAAATCTTCCAGGTGAGGACTCTCTGACCCTTTT TGCTTTCAAATATGTAAACATTAAGAGTTCATTCAGCAAATTTTGACTAATGGACCTCTAAAATGAAATCAAAATGCCAA AACTGACAAACATATCAAAGAAGTTGATAACTGACCAAGATTAAAAGAAAAAATGAATGAAAACACAGTAGATTCCGGCA CATTATGATTCATAAATTATCAGCATCTGAAAAACATTCTTGGGCTTAGGGGACCAATCACTCCCTTTTAAACTAGAGCA ACAAAGATTTAGATAATTTTATTGATATCCAAACATTGAATAGTAATTTTGGTCCCTGAAAGATTTATATAGGTTAGTTT AGTCCATCAACTATCGAAATATGTTAAAATAGTCCATTGAAGATGTAAAGATGTTCAAGTAAGTCATTCCGGGAACTAAA ATTGATAGTCTTTTTCATCCTTCAAGGACTAAATAGATCATAACTTTCAAGTATTAGATTGACCGTTTTTCATTTTCATG GACTATTTTTCCTATTTCCATTTTTCATGGACTAAGTGCATGTTTGGATACACGGTGAAAAGGCACGGTGAAAGCAAAAT CGCGTGGACAGCCACAAAAGCTAAGAGAAGTTGTTTCTGTCCATCGTGATTTTGGCTCACCATGGTTTTCCACCATGTAT CCGAACATGCACTAAGTTGACTGATCCTATATCTTTAAAGGACAAAAGTAACCATTCAGTTGATATCTGAATATCCGTAA CTAAATATCTATACTTATGTATAGATATCAGATCAGGACGTTTTCCTTCTTTCTCAGGGGAAGCTTGGATTTTATAACAA ATTTAGTGGCCTGTAATGATTATCTTCTTGTTCACTTTTATACATATTCTGACAATTGAATTTGTTGAGGGGCTTCCATT GACTCTGTCCAAATCTGGACTAAATGCAGTTTTGGGCAACACATTCTCTGATAAAATTCTACCCTTTCTTATCTCAGGTG CCAGGAAAGATGGGAGCAGTGTCCATTTCTTTAACAGAACAGTTAACGCATACGCTACTGGACAAAGAAAGCGTAGAAAG ATCCATCATCAACATGGTTTGACTCATGAGGAGCATGTGCGCTGGCACAAGACAGGTAAGACCAAACCTGTGATAGAAGA TGGAGTGCATAAGGGATTCAAGAAGATCATGGTTCTTTATGTCAGCTCTCAGAAAAGGTCCAAGCCATATAAATCCAATT GGGTGATGCATCAGTACCATCTAGGAAGTGAAGAGGAAGAGAAGGATGGTGAATATGTGGTTTCAAAAGTTTTTTATCAA CCGAACAAGCATACTGAGAAAAATGAGGAGAATCCAGTGGCTGAAGGTTCTGACATGGCGTCACGAACCGATCCAAGAAC CCCAAATCCAAATCCTCCAAGTCGACCTCATACTGATATATATGTTGATTGTGATGACAATTTTGATGACAGTGAACTTC CATTACTCATCCAGGTGTGTAGTTATTTGCAAACTCTTTTACGATTGATTTTGAAGGCAGACTTTCGCTTATGGGTTTTA GAATTGATACTGATGAAAGAAAATATGATCAAAACATGCTAGAAGATGACTTCCATCTCAGTGAGACTAGAAGCATGTTT GGAAACCTTTCTATCAGGGGACTTTTGAGTTTCAGAATTGTTTCTGATGAAAGAAAAGTTGATCCAATCATGCTATGAAA TGACTTCCATTGCACATTAGTGAAGCTTGAAGCATGGACAACTACATGCACCAGACCCCTGGATGGTACACATATAGTTG TCCATGCTTCCGTCGCTCAAATACTAATGAGAGTAGAGAAAAAATATTTAACATTTTTATATTATTTTCCTCCTATACAC TACATTCTTTGATTCTTTTTTAAAATTTTAATTTGATGAACTAGGATGATGAGTGTGTACCTCAAGAATCACATGCCCCA CCATCTGATGTAAAGAATGAGGACAATATGGGTGACTCTGCATGGTTAGCTGGTGAATCACAGGATGTAAGTTACTTTGA TGACTTGGATGACATCGTACTATGCCAGGAGATGTTAGATTCTTCTGGTCTCTTCAATGATTCTGTATTGAACTCCTCCA CTTTTAACGGTTTCACTGGTCATGCAAATGAGGGCCAACTTGGAATTTCTATCCAGGACACCTTGGAATTGGATACTCTT CTAGATTTTGACTTTTCTGTAAGCACCAACTTACCCTTTTAGAGCAAGTTCTATTTGAGACTGATGCTCATATTATCACC ATTTGGTGGAGTAGTAGTATCTGTATAAGAGTATTTTATGTCAGAGGTCAAGTCTCTATTTGATGTCTCTGATGGAGTGA AAATCCAACAGCTTAATGTATAAAATTAACAATTGAATCATTTGTTTTTTAACTTAAATCATCTGGTTTATCAGTTTTTG TAAAAGTTAGGCTTAATTATATTTTGGCTAAAAAGCATTTTTGGCCCCTGATGTTTTAAGTTTGTGCAAATTCTGCGCCT ACTTTATTTTTGTCGATGTTTCTACCCCTCATGTTTTCAAACAGTGCACCGTCT
CDS sequence (LotjaGi2g1v0239800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGAAGCTGGATTATTGACTTTGGATCATTTGCAAAGAAAGTGAAAAACACTAATCTGTCAACAGTTGATCAAAT CAAGGACTGTGGAGCATATCTTGATTGTCCAAAATGTCATTATCGGATCGACAACAGTGATGTTTTTCCGGAGTGGCCTG GCTTTCCTGCTGGTGTAAAGTTTGATCCTTCTGATGTTGAACTTTTAGAACATTTAGCAGCAAAGCATTGTATTGGAGAC AGAGTGGCACACATGTTCATCCATGAGTTTATCCCAACTCTAGAAGGAGATCAAGGTATTTGCTACACACATCCAGAAAA TCTTCCAGGTGCCAGGAAAGATGGGAGCAGTGTCCATTTCTTTAACAGAACAGTTAACGCATACGCTACTGGACAAAGAA AGCGTAGAAAGATCCATCATCAACATGGTTTGACTCATGAGGAGCATGTGCGCTGGCACAAGACAGGTAAGACCAAACCT GTGATAGAAGATGGAGTGCATAAGGGATTCAAGAAGATCATGGTTCTTTATGTCAGCTCTCAGAAAAGGTCCAAGCCATA TAAATCCAATTGGGTGATGCATCAGTACCATCTAGGAAGTGAAGAGGAAGAGAAGGATGGTGAATATGTGGTTTCAAAAG TTTTTTATCAACCGAACAAGCATACTGAGAAAAATGAGGAGAATCCAGTGGCTGAAGGTTCTGACATGGCGTCACGAACC GATCCAAGAACCCCAAATCCAAATCCTCCAAGTCGACCTCATACTGATATATATGTTGATTGTGATGACAATTTTGATGA CAGTGAACTTCCATTACTCATCCAGGATGATGAGTGTGTACCTCAAGAATCACATGCCCCACCATCTGATGTAAAGAATG AGGACAATATGGGTGACTCTGCATGGTTAGCTGGTGAATCACAGGATGTAAGTTACTTTGATGACTTGGATGACATCGTA CTATGCCAGGAGATGTTAGATTCTTCTGGTCTCTTCAATGATTCTGTATTGAACTCCTCCACTTTTAACGGTTTCACTGG TCATGCAAATGAGGGCCAACTTGGAATTTCTATCCAGGACACCTTGGAATTGGATACTCTTCTAGATTTTGACTTTTCTG TAAGCACCAACTTACCCTTTTAG
Protein sequence (LotjaGi2g1v0239800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARSWIIDFGSFAKKVKNTNLSTVDQIKDCGAYLDCPKCHYRIDNSDVFPEWPGFPAGVKFDPSDVELLEHLAAKHCIGD RVAHMFIHEFIPTLEGDQGICYTHPENLPGARKDGSSVHFFNRTVNAYATGQRKRRKIHHQHGLTHEEHVRWHKTGKTKP VIEDGVHKGFKKIMVLYVSSQKRSKPYKSNWVMHQYHLGSEEEEKDGEYVVSKVFYQPNKHTEKNEENPVAEGSDMASRT DPRTPNPNPPSRPHTDIYVDCDDNFDDSELPLLIQDDECVPQESHAPPSDVKNEDNMGDSAWLAGESQDVSYFDDLDDIV LCQEMLDSSGLFNDSVLNSSTFNGFTGHANEGQLGISIQDTLELDTLLDFDFSVSTNLPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 372 | 372 | 1.2E-155 | – | |
| PANTHER | 1 | 372 | 372 | 1.2E-155 | – | |
| SUPERFAMILY | 40 | 217 | 178 | 3.92E-35 | ||
| ProSiteProfiles | 55 | 217 | 163 | 29.121 | ||
| Pfam | 56 | 198 | 143 | 7.6E-20 | ||
| Gene3D | 64 | 223 | 160 | 6.1E-22 | ||
| MobiDBLite | 220 | 261 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0239800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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