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LotjaGi2g1v0240000.1

Overview

Field Value
Gene ID LotjaGi2g1v0240000
Transcript ID LotjaGi2g1v0240000.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase; TAIR: AT3G27540.1 beta-1,4-N-acetylglucosaminyltransferase family protein; Swiss-Prot: sp|Q02527|MGAT3_RAT Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase; TrEMBL-Plants: tr|A0A151RN80|A0A151RN80_CAJCA Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase; Found in the gene: LotjaGi2g1v0240000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:70094710..70097743) extracted from Lotus japonicus Gifu genome v1.2.

GGGAAACTCACACAGTCATAGCTACAAAGGTTGTAGGCTAGCTTTACAAAAAAAAAAAATACTGCAATTTGCTATTCATA TTCTTAGTGATAACTGGTTGATACTTTAGTGGGAGCAGAGAGGAACAAAGAAGAAACTGCAACCCAATTATTGTTGTTCT TCATCATGTCAGAGGGATATTATAACTCCAAGAAGACTGATGACATATGTGGGGATGTTTGTAGCCAGGTACTTCTTTTC TTTTCTTTCTCTATTTTCCCAAATTGGGTTTTTTCTTTATGTCTGGTTTGTTTCTACTTGGTTGTAAATTTGGTTGTTCT TTAAAGTTGTGTTGTCCATGCTAAAATGGGAACTTGAAACATATTGGGTTTCATCAGTGATGATCACTTACTTTTCAATG CTTCTCTCAGTTTATTCCTGCTTATCTCATCCCTGTGGTTATACAGATATCAAATATGATTCATTTGTGTATGTTGATGG GTCTATGCTTTTTATTAGTGGGCTATAGTTTCAATCCTTTGTAGATACGTAATTTCTCTATGGTTGTCTAGTTTTTTAAC ATCTGAAGTGTAGCTTTTCTATCTAGCTCTTGAATTGTGAATTTCATTTCAGCTTTCAATGTTTTATTACCCTTTCTGTC TCTCTCTCTCTCTCTACCCTCTACTTCACTTGGTTTCCCTTTGCTCAGGGAATCCAGAATTTGGATTTTGTGCAGTCAGG GAAATCCTAATTTCTTCCTGAATCTGAGTTGTTTGATTTCTCAAGTTTTGAAATTTGTCCGATCTTGATGAAACATATGA ATCGTGTGATCTTTGATCGAATGGTTCAGATTCAGTGATGATATGAATTCAGGATTGACCTGACAGCTATTTGAGCTAGG AAATGAAGAAACATGTGCCTTTCATAATTGTGTAATTTTAGAATTTTTTGTTGTTGTGGTATATCGTTTTCAACTCCATT TTCTGTAGTTGCTTTAAATCATATTTTCATGAGAAGATGACATGGTACAAGCTTGTGTTTTTGAACTACTCATCACTCAG CAGCATGATACTTTTGGTCATTAAATTATCCATGAAACCTAAAGAATTTTTGTTTTCAATGTAGCAGGGAACTAGTGCAG CTTTGAGCATGTCAAGAAGACTCCGGTGCATTTTCCGAGGGTTGGACATCAAGACCTTCATATTTTTGTTCATGGTTATC CCAACAGGCATCATCTTTGTTTATTTTCATGGCCAGAAAATCTCATACTTTCTGAGACCACTATGGGAATCTCCTCCAAA ACCCTTCCATGAAATCCCTCACTATTACCATGAGAATGTCTCAATGGAAACTCTATGCAGTCTTCACGGTTGGGGAATTC GCGAATCACCTAGGCGCGTCTTTGATGCTGTTTTGTTTAGCAATGAAGTTGACATTCTTACTCTTCGTTGGAAAGAACTG CATCCATATGTGACACACTATGTAATCCTTGAATCAAACTCAACATTCACAGGATTGTCTAAACCTTTGGTTTTCGCAAG CAATCGGGACAATTTTAAGTTTGTCAAGTCTCGCCTGACATACGGGGTGATTGGGGGAGGATCTAGGAAAGGGGAGAATC CTTTTGTTGAAGAGGCGTATCAAAGAGTCGTCCTGGACCGGCTTCTGGAGAAAGCCGGAATAGAAGATGATGATCTCTTG ATAATGTCTGATGTTGATGAGATTCCTAGTGCACACACAATTAACCTCTTGAGGTGGTGCAGTGACATCCCTGATGTTCT TCATCTTCAGCTGAAGAACTACTTGTACTCTTTTGAGTTTTTTCTTGACAATCAAAGTTGGAGAGCTTCAATTCATAGAT ACCGAACCGGCAAGACGCGCTACGCGCACTACAGGCAGGGTGATGTGTTGTTGTCAGATGCTGGCTGGCATTGTAGCTTC TGTTTCCGCCGTGTAAGTGAATTCGTATTCAAGATGAAGGCTTACAGCCATTATGATCGGGTGCGGTTCGCTCATTACTT GAACCATGACAGGATTCAGGATGTGATATGCAAAGGAAGTGACCTGTTTGACATGCTTCCTGAAGAGTATACATTTAAGG AGATTATTGGGAAGATGGGACCTATTCCTCATTCTTACTCAGCAGTGCATCTTCCATCATACTTGTTGAATAATGCAGAG AGATACAAGTACTTGTTGCCTGGTAACTGCAGAAGAGAAAGTAGCTGAGCTTTTGAATATGAGATCTATTGATTTTGGGC ATAACACCAAAAATAGCAACATTGAATGAACTATAGCTGTGGTGTGGTCATGTACAAACACACATTATACCAAGCAAATG GTGACCCGTTTTTGGAGGGAAGAGCCTGAATGGAATCTTGGAGTTTGACATAGACATGTGAGAATCTTGAGTGAGAAGCT TCTTGTGAGGGAAAGTGTTCAGCTTTTAACAAGTTTTTGCACATTCTCTTTTGGACATGCATAAATCTCAAGTTGCTCTC AATATAGTTGCAAGAAATTCCCAGCATTTACGTATGGGAATTTGGATTTCTTGGACTAAGTTATACACATACTCTGACGG CTTAGGTTGTGAACTTGAACATCTCTAGTTTTAGCTACTTCTTTACAACATTTTGATATTCAACTTTGATTCATCTTCTT GTTTTTTTTTTTCACAAAAATGTTTCAACTAGGGTTTTAAATTGTGGTTGTTGTTGTGTTGCGGAATTGCGGACAAATGC GGGTTGAGCGATTGCAATTGCGGCCGTGATGCCTATTCAAGGAGTCGGAAATCCTTTATGGTGCGATCGTAATTGTGGTT GTGGACCGCAATTTAAAACTATGATTATAACCATTGATATTGTGATTTCACAGAAAATTAATTTTCTGCCACAATTGTAC ACAGTTTTGCAACAATATATTTTATGGGTAAAGTATTTAATTGTTAATTTTGCACATGACTTGTATTTTAAGTGGACTGT GTTGACTTGTGCCACAACGGTCGGATCTTTTTCAGGGCCAATTCACGGACAGCTTTTTGGTGTCCAGACACTCA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0240000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAGAGGGATATTATAACTCCAAGAAGACTGATGACATATGTGGGGATGTTTGTAGCCAGGGAACTAGTGCAGCTTT GAGCATGTCAAGAAGACTCCGGTGCATTTTCCGAGGGTTGGACATCAAGACCTTCATATTTTTGTTCATGGTTATCCCAA CAGGCATCATCTTTGTTTATTTTCATGGCCAGAAAATCTCATACTTTCTGAGACCACTATGGGAATCTCCTCCAAAACCC TTCCATGAAATCCCTCACTATTACCATGAGAATGTCTCAATGGAAACTCTATGCAGTCTTCACGGTTGGGGAATTCGCGA ATCACCTAGGCGCGTCTTTGATGCTGTTTTGTTTAGCAATGAAGTTGACATTCTTACTCTTCGTTGGAAAGAACTGCATC CATATGTGACACACTATGTAATCCTTGAATCAAACTCAACATTCACAGGATTGTCTAAACCTTTGGTTTTCGCAAGCAAT CGGGACAATTTTAAGTTTGTCAAGTCTCGCCTGACATACGGGGTGATTGGGGGAGGATCTAGGAAAGGGGAGAATCCTTT TGTTGAAGAGGCGTATCAAAGAGTCGTCCTGGACCGGCTTCTGGAGAAAGCCGGAATAGAAGATGATGATCTCTTGATAA TGTCTGATGTTGATGAGATTCCTAGTGCACACACAATTAACCTCTTGAGGTGGTGCAGTGACATCCCTGATGTTCTTCAT CTTCAGCTGAAGAACTACTTGTACTCTTTTGAGTTTTTTCTTGACAATCAAAGTTGGAGAGCTTCAATTCATAGATACCG AACCGGCAAGACGCGCTACGCGCACTACAGGCAGGGTGATGTGTTGTTGTCAGATGCTGGCTGGCATTGTAGCTTCTGTT TCCGCCGTGTAAGTGAATTCGTATTCAAGATGAAGGCTTACAGCCATTATGATCGGGTGCGGTTCGCTCATTACTTGAAC CATGACAGGATTCAGGATGTGATATGCAAAGGAAGTGACCTGTTTGACATGCTTCCTGAAGAGTATACATTTAAGGAGAT TATTGGGAAGATGGGACCTATTCCTCATTCTTACTCAGCAGTGCATCTTCCATCATACTTGTTGAATAATGCAGAGAGAT ACAAGTACTTGTTGCCTGGTAACTGCAGAAGAGAAAGTAGCTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0240000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSEGYYNSKKTDDICGDVCSQGTSAALSMSRRLRCIFRGLDIKTFIFLFMVIPTGIIFVYFHGQKISYFLRPLWESPPKP FHEIPHYYHENVSMETLCSLHGWGIRESPRRVFDAVLFSNEVDILTLRWKELHPYVTHYVILESNSTFTGLSKPLVFASN RDNFKFVKSRLTYGVIGGGSRKGENPFVEEAYQRVVLDRLLEKAGIEDDDLLIMSDVDEIPSAHTINLLRWCSDIPDVLH LQLKNYLYSFEFFLDNQSWRASIHRYRTGKTRYAHYRQGDVLLSDAGWHCSFCFRRVSEFVFKMKAYSHYDRVRFAHYLN HDRIQDVICKGSDLFDMLPEEYTFKEIIGKMGPIPHSYSAVHLPSYLLNNAERYKYLLPGNCRRESS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12224:SF11
1 386 386 2.0E-235 –
Phobius
CYTOPLASMIC_DOMAIN
1 39 39 - –
PANTHER
PTHR12224
1 386 386 2.0E-235
IPR006813
TMHMM
TMhelix
39 61 23 - –
Phobius
TRANSMEMBRANE
40 61 22 - –
Pfam
PF04724
40 385 346 8.0E-178
IPR006813
Phobius
NON_CYTOPLASMIC_DOMAIN
62 387 326 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003830
Molecular function Beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-mannosyl-R = UDP + 4-(N-acetyl-beta-D-glucosaminyl)-beta-D-mannosyl-R.
Subterm of
GO:0006487
Biological process Protein N-linked glycosylation A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan.
Subterm of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0240000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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