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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0241400 |
| Transcript ID | LotjaGi2g1v0241400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycosylphosphatidylinositol anchor attachment 1 protein; TAIR: AT5G19130.1 GPI transamidase component family protein / Gaa1-like family protein; Swiss-Prot: sp|Q9WTK3|GPAA1_MOUSE Glycosylphosphatidylinositol anchor attachment 1 protein; TrEMBL-Plants: tr|I1K1L2|I1K1L2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0241400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70378503..70382654) extracted from Lotus japonicus Gifu genome v1.2.
GAAATAATGTAATTTGCAGGGACGAAAATTAATATTTAATCAAACAAAATTCCCCCTTCTTCCTTCCTTGAGCACTTCCG CCAATCCTCTCATCACTGGCCGTCAAGCCCCCTCTGCTCCGCCGCGCGCTTACAGTTGCTTTCTCCTCCCCTTTCCGCCG CCGTCCCCAACAGCTTCATCTCCGATCCAGATTCGGAATCTACTATCTTCGGTGTTACTGTTCCTCGATTCTGCTGTTGA TTGCGAAGCAGCGATTTTGAATCGGCGAATCTGAAGTGCAAGGAGGTGATGGGTGAGGGTGAAGGTGAAGGCGAAGGCGG TGGTAGGGCGAAGCAGAAGCAGAGAGCTCGCCCAATCGTACGCATAGGGATCTTCCTCATCTCTCACAGCAACTTCGTCA GGTTACCATTCTCACTCTCTCAACTCTCCTTCATCCTCTTCACTTCGTTCTCGTTTTCTCACCGTCGTTTTGTGTTTTTC AGCGTCGTTTGTTTCATTGCAGGTGTGGTGGCTCTTCTTCTTCTCCCCATCCTCGCCAAGAACACCTACATTTCCGAGAA TGCCCTCATGCCAGGTTCAGCTAACAGCATGCTTTCCACTCACGATGTTTCCGAGGCAAATAAGCTCATCAACGAGTTAA CTCAGTCGCACCTCACTTCCATGTAACTTCTCATTCCCTTCCATATCCACCCTTTCTATGTTTAGTATGTAACCTTTCAA ATTCAATCCTTCCATGTTAATTATAGCAGTTGGTGAAGCTTTCCATTGTCAAAAAGGAAATTTTATGATTAGTCATACTA GTTACCTGTTTGGATGCAAACCATAGAGCATTTTTTGGAGCTTATTTAGTGTATTTTTTAGTAGATAAGAGAAGAATAAG CTCGTACCAAACATGCTCTAAGTAAGATAGTATTAACATTATAATTTGGGGCGGGGGGGGCTTAAGTGGGTGTTTGGGTA AACAACTTGATTAAGCGCTTATGGCAATAAGCTCTTATCACGTAAGTGAAACTTACTAAAATAAGCTGAAAATAGTTTTA CTGATAAGCATAAGCTCTTATTTATAGGCTAATGTGAACAACTTATGAAAATTAGCTCAAAACGGTTTGTAGGGGGGCCA TGAACTGTTTACATAAGCTCTCTCAAATTCTTGCATAAGTGCTTAAGCTGTTCCAAACGGGGCCTATATCTTTTCTTAGG TGATTTTGGCATGTGTGCAGAAGACTCGTAGAAATATCGTATGGAGGATTTGATCAGACGTAAGAGAGGTTTATAATAAA TGATCTATTTTGAGCTTGATACATGGCAGGACATTTTGATAATATTTGATTCATGTAGTTGGTCTCTCTTAATGGTAAAA TGGTTGGCTATTGTTGTATTGAAATTGATTTTTATGACTTTATGAGAGAAAAGAAATAAAGAGAAATTCACTCTGTTTCA ATGCAGTGAAAGTCAAAAACTTATTGCACAGTATATGTCAGCCTTGGATGCTGAAGTTACTCATCACAAGTTCTATCCTC AATTGAATCAGTTCCATCCGCTGCACTTTTTTACCAGTCCTGATTCAGGCTTAATCTCAGAAAATATAAGCTGTTCCTTG CTAGGGGTGAACACTGTTGGAATTGTTAGAGCGCCACGTGGGGATGGCAAGGAAGCTATTGTCTTGGTAACACCTATCAA TTCGAAGAAAGTTGGTCCAGGGGAGGCTTTGTCTTTGGGCATTGCTTACTCAGTGTTCTCACTGCTTTCGCGAGTTACTT GGCTGGCGAAGGACGTTGTATGGCTTGTGGCTGATTCTCAATATGGAGAGTATTCTGCTGTGGCTGCTTGGCTAACAGAA TATCAGGCCCCTGTTTCTCGTGGAATTGGCATAGTTAATAGTGAACAGTGTAATGGCAGCAACACCATTGATGAATATGA CGGGTTTAGACGTGCTGGAACTATGGCTGCAGCTCTTGTAATTAAGGTTGCAGAGCAAGGTAACCATATTGAAGACAGTA TTAATATTTATGCTGAGGCGTCCAATGGCCAGATGCCGAACCTCGACCTCATCAATATTGTAAATTATCTAGCGGTGCAT AAACAGGGTTTGCGGATGAAAGTGAAGAAGATGTGGTCTCTACTTGGATCCAGGTGGCTCAATACTTTAGGTGTTATATT TGAATCTTTGGGACATATTGCTAGAAGCTTAGATCCTAAATGGAAATTCAGTATTCCTGCTGCTGAATATGTTGAGGGCG CTGCTACCCTGGCAAGTTCATTGTATTACCAGGTGCTTTACTTTTACCCCATCTAAAAAGTGTTTATTATTTTATTCCCT CTGGCCTCTTCATAAATATTCTGTGTCTGTGTATTATTCTTCACAGGGTTTGGGTGTTCCCACTGGTCCTCATGGTGCCT TCCGTGACTATCAAGTTGATGCAATTACTCTGGAAATTCTTCCAAAAGTTTCTCCTGCTAAAATGATCAGGCGTAATGAT TTCATGCTCCGTGGCGGAAGGTATGTGTAGTTGTCACTCATACAAGTTGCATTTGTAACAATCATTGAATAAATGGCTGG CCTGTCCATCAATTGATTTATCGTACAGATTTTACAATAGTCAAGTCTATTATGGTGATTCCCATCTGCTTATGTTTGCC ATTTACTAGCAAGCTACTGCACAGAAACTAAGAATATCTTGTATTTGTTTTTAGAAACTAAAGAAAGTGAGAAGTACTAG GTAATTAGTTGAAGGCTCAGTCCACTTTCAATCTTGTATCCTTGTTTTTTCTTTTGCCAATTGTGGGTGGGTGGGGGGGG GGTGCTTGTGATGGGAAACTGGGGGTTTCTTGTGGTTGGAAATTGTTATTCTTATAACTAGCATATGTTAATTCTATAGA ATGTTATTTAGCTTTCACATTTCAAAGCAAGCCAGAATACCTTTCTCTCTTTGTTTGATCCCCGGTGGCGGTCATAACAT TTCCTTCTTGTTGCAGGTTGATTGAAGGAATCATACGCTCAATAAACAACCTTCTTGAGAAGTTTCATCAATCGTTCTTT TTGTACCTCTTGACATCCCCTAGTAAGTTTGTGTCGGTTGGCGTTTACATGATTCCATTTGCATTACTTGTTGCGCCGCT TCCAATAGTTGCGGCTTCCCTCCATGCTGATGCTAATAAATCCACTCCCCTAGCCACACCTGCCTCTGAAGTTGATGTCA ACCGCAAATCTTGGAAATGGCTGAACTCAGCCAGAAAGGTCTTGGTCATTCATTTATGGGGTGCTGTTGTCTCCTTACTC CCATATTTCCTATGCCAAATACCCAATACCACGGCAACAACAAACTTTATAACATGGGGTTTGCTATCAGCTTTTAGTCT CGTAATTCTGTCCTTGATATTGGGCTCTCCAATTTTTGAAACTGCAGCATCTCAACCTGAGAAAAGTGAATGGGCTAGCT TAAAGTCTGTAACCATATCAACCACTTTCATTGGTTTATCTCTCATGTCAGTCATTAACTTTGCTACAGCAGAAATCGGG GCTTTACTCATCGTCCCGATTTGTCTAATGGCTCGACCATTGAGGCTTGATGTTCAAGCTAGGAGCTTGAGAACCTTACT AAGGGCCATTTGTAATCTTGCTTTAGGTTTTATTGGGTTTCCGCCAGTTGCATATGTTCTAATGAAAGGCACGTTTGAAG GTTTTCATGGTACTAATGTTGGTGACTATTGGAATTGGGTGGAATCCCTTTGGACATGGAACAGTGCCACTTACCTCTAC GTAGGTGTTGTTCATCTGCCATGCTGGGCACTGTGTGTTCACATTTTATTTCATCATTGTTGACATGTACTATTGGTTAG TTGGACATGCAATGCATGCAAGAAATTTTTTCCCTTCACGTTTATGTATTTTTCTCTAATTCATATCATATTTCTTCACG AGTCATTGTCATTGTAATTAGGTTATGAAAACTATTGAGCAGTAGAGAAGGAGAAAAGGTTTAGATGCCTAAAGTGTGAA TTATTGTTGAGCCTCATATCTGTTATTTTTTTAGTTCAATCACCACCACACATTAGAGCTTTTGTGATGCTTACGTATGT ACTTCCACATTGCCTACCAACACAATTCTACCTCAACACTAAGAATCGAACACAACATTTTGAGGAAAAATT
CDS sequence (LotjaGi2g1v0241400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGAGGGTGAAGGTGAAGGCGAAGGCGGTGGTAGGGCGAAGCAGAAGCAGAGAGCTCGCCCAATCGTACGCATAGG GATCTTCCTCATCTCTCACAGCAACTTCGTCAGCGTCGTTTGTTTCATTGCAGGTGTGGTGGCTCTTCTTCTTCTCCCCA TCCTCGCCAAGAACACCTACATTTCCGAGAATGCCCTCATGCCAGGTTCAGCTAACAGCATGCTTTCCACTCACGATGTT TCCGAGGCAAATAAGCTCATCAACGAGTTAACTCAGTCGCACCTCACTTCCATTGAAAGTCAAAAACTTATTGCACAGTA TATGTCAGCCTTGGATGCTGAAGTTACTCATCACAAGTTCTATCCTCAATTGAATCAGTTCCATCCGCTGCACTTTTTTA CCAGTCCTGATTCAGGCTTAATCTCAGAAAATATAAGCTGTTCCTTGCTAGGGGTGAACACTGTTGGAATTGTTAGAGCG CCACGTGGGGATGGCAAGGAAGCTATTGTCTTGGTAACACCTATCAATTCGAAGAAAGTTGGTCCAGGGGAGGCTTTGTC TTTGGGCATTGCTTACTCAGTGTTCTCACTGCTTTCGCGAGTTACTTGGCTGGCGAAGGACGTTGTATGGCTTGTGGCTG ATTCTCAATATGGAGAGTATTCTGCTGTGGCTGCTTGGCTAACAGAATATCAGGCCCCTGTTTCTCGTGGAATTGGCATA GTTAATAGTGAACAGTGTAATGGCAGCAACACCATTGATGAATATGACGGGTTTAGACGTGCTGGAACTATGGCTGCAGC TCTTGTAATTAAGGTTGCAGAGCAAGGTAACCATATTGAAGACAGTATTAATATTTATGCTGAGGCGTCCAATGGCCAGA TGCCGAACCTCGACCTCATCAATATTGTAAATTATCTAGCGGTGCATAAACAGGGTTTGCGGATGAAAGTGAAGAAGATG TGGTCTCTACTTGGATCCAGGTGGCTCAATACTTTAGGTGTTATATTTGAATCTTTGGGACATATTGCTAGAAGCTTAGA TCCTAAATGGAAATTCAGTATTCCTGCTGCTGAATATGTTGAGGGCGCTGCTACCCTGGCAAGTTCATTGTATTACCAGG GTTTGGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGTGACTATCAAGTTGATGCAATTACTCTGGAAATTCTTCCAAAA GTTTCTCCTGCTAAAATGATCAGGCGTAATGATTTCATGCTCCGTGGCGGAAGGTTGATTGAAGGAATCATACGCTCAAT AAACAACCTTCTTGAGAAGTTTCATCAATCGTTCTTTTTGTACCTCTTGACATCCCCTAGTAAGTTTGTGTCGGTTGGCG TTTACATGATTCCATTTGCATTACTTGTTGCGCCGCTTCCAATAGTTGCGGCTTCCCTCCATGCTGATGCTAATAAATCC ACTCCCCTAGCCACACCTGCCTCTGAAGTTGATGTCAACCGCAAATCTTGGAAATGGCTGAACTCAGCCAGAAAGGTCTT GGTCATTCATTTATGGGGTGCTGTTGTCTCCTTACTCCCATATTTCCTATGCCAAATACCCAATACCACGGCAACAACAA ACTTTATAACATGGGGTTTGCTATCAGCTTTTAGTCTCGTAATTCTGTCCTTGATATTGGGCTCTCCAATTTTTGAAACT GCAGCATCTCAACCTGAGAAAAGTGAATGGGCTAGCTTAAAGTCTGTAACCATATCAACCACTTTCATTGGTTTATCTCT CATGTCAGTCATTAACTTTGCTACAGCAGAAATCGGGGCTTTACTCATCGTCCCGATTTGTCTAATGGCTCGACCATTGA GGCTTGATGTTCAAGCTAGGAGCTTGAGAACCTTACTAAGGGCCATTTGTAATCTTGCTTTAGGTTTTATTGGGTTTCCG CCAGTTGCATATGTTCTAATGAAAGGCACGTTTGAAGGTTTTCATGGTACTAATGTTGGTGACTATTGGAATTGGGTGGA ATCCCTTTGGACATGGAACAGTGCCACTTACCTCTACGTAGGTGTTGTTCATCTGCCATGCTGGGCACTGTGTGTTCACA TTTTATTTCATCATTGTTGA
Protein sequence (LotjaGi2g1v0241400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEGEGEGEGGGRAKQKQRARPIVRIGIFLISHSNFVSVVCFIAGVVALLLLPILAKNTYISENALMPGSANSMLSTHDV SEANKLINELTQSHLTSIESQKLIAQYMSALDAEVTHHKFYPQLNQFHPLHFFTSPDSGLISENISCSLLGVNTVGIVRA PRGDGKEAIVLVTPINSKKVGPGEALSLGIAYSVFSLLSRVTWLAKDVVWLVADSQYGEYSAVAAWLTEYQAPVSRGIGI VNSEQCNGSNTIDEYDGFRRAGTMAAALVIKVAEQGNHIEDSINIYAEASNGQMPNLDLINIVNYLAVHKQGLRMKVKKM WSLLGSRWLNTLGVIFESLGHIARSLDPKWKFSIPAAEYVEGAATLASSLYYQGLGVPTGPHGAFRDYQVDAITLEILPK VSPAKMIRRNDFMLRGGRLIEGIIRSINNLLEKFHQSFFLYLLTSPSKFVSVGVYMIPFALLVAPLPIVAASLHADANKS TPLATPASEVDVNRKSWKWLNSARKVLVIHLWGAVVSLLPYFLCQIPNTTATTNFITWGLLSAFSLVILSLILGSPIFET AASQPEKSEWASLKSVTISTTFIGLSLMSVINFATAEIGALLIVPICLMARPLRLDVQARSLRTLLRAICNLALGFIGFP PVAYVLMKGTFEGFHGTNVGDYWNWVESLWTWNSATYLYVGVVHLPCWALCVHILFHHC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| PIRSF | 13 | 699 | 687 | 2.6E-196 | ||
| PANTHER | 17 | 697 | 681 | 4.6E-206 | – | |
| PANTHER | 17 | 697 | 681 | 4.6E-206 | ||
| Phobius | 23 | 56 | 34 | - | – | |
| TMHMM | 36 | 55 | 20 | - | – | |
| Phobius | 57 | 451 | 395 | - | – | |
| Pfam | 151 | 691 | 541 | 3.3E-124 | ||
| TMHMM | 449 | 471 | 23 | - | – | |
| Phobius | 452 | 473 | 22 | - | – | |
| Phobius | 474 | 505 | 32 | - | – | |
| Phobius | 506 | 523 | 18 | - | – | |
| TMHMM | 506 | 523 | 18 | - | – | |
| Phobius | 524 | 534 | 11 | - | – | |
| Phobius | 535 | 558 | 24 | - | – | |
| TMHMM | 536 | 558 | 23 | - | – | |
| Phobius | 559 | 569 | 11 | - | – | |
| Phobius | 570 | 588 | 19 | - | – | |
| TMHMM | 582 | 604 | 23 | - | – | |
| Phobius | 589 | 593 | 5 | - | – | |
| Phobius | 594 | 613 | 20 | - | – | |
| Phobius | 614 | 624 | 11 | - | – | |
| Phobius | 625 | 647 | 23 | - | – | |
| TMHMM | 625 | 647 | 23 | - | – | |
| Phobius | 648 | 676 | 29 | - | – | |
| TMHMM | 675 | 697 | 23 | - | – | |
| Phobius | 677 | 696 | 20 | - | – | |
| Phobius | 697 | 699 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Cellular component | GPI-anchor transamidase complex | An enzyme complex which in humans and yeast consists of at least five proteins; for example, the complex contains GAA1, GPI8, PIG-S, PIG-U, and PIG-T in human, and Gaa1p, Gab1p, Gpi8p, Gpi16p, and Gpi17p in yeast. Catalyzes the posttranslational attachment of the carboxyl-terminus of a precursor protein to a GPI-anchor. |
Expression pattern of LotjaGi2g1v0241400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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