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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0241400 |
| Transcript ID | LotjaGi2g1v0241400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycosylphosphatidylinositol anchor attachment 1 protein; TAIR: AT5G19130.1 GPI transamidase component family protein / Gaa1-like family protein; Swiss-Prot: sp|Q9WTK3|GPAA1_MOUSE Glycosylphosphatidylinositol anchor attachment 1 protein; TrEMBL-Plants: tr|G7LEX7|G7LEX7_MEDTR Glycosylphosphatidylinositol anchor attachment-like protein; Found in the gene: LotjaGi2g1v0241400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70378815..70382325) extracted from Lotus japonicus Gifu genome v1.2.
GAAGGCGGTGGTAGGGCGAAGCAGAAGCAGAGAGCTCGCCCAATCGTACGCATAGGGATCTTCCTCATCTCTCACAGCAA CTTCGTCAGGTTACCATTCTCACTCTCTCAACTCTCCTTCATCCTCTTCACTTCGTTCTCGTTTTCTCACCGTCGTTTTG TGTTTTTCAGCGTCGTTTGTTTCATTGCAGGTGTGGTGGCTCTTCTTCTTCTCCCCATCCTCGCCAAGAACACCTACATT TCCGAGAATGCCCTCATGCCAGGTTCAGCTAACAGCATGCTTTCCACTCACGATGTTTCCGAGGCAAATAAGCTCATCAA CGAGTTAACTCAGTCGCACCTCACTTCCATGTAACTTCTCATTCCCTTCCATATCCACCCTTTCTATGTTTAGTATGTAA CCTTTCAAATTCAATCCTTCCATGTTAATTATAGCAGTTGGTGAAGCTTTCCATTGTCAAAAAGGAAATTTTATGATTAG TCATACTAGTTACCTGTTTGGATGCAAACCATAGAGCATTTTTTGGAGCTTATTTAGTGTATTTTTTAGTAGATAAGAGA AGAATAAGCTCGTACCAAACATGCTCTAAGTAAGATAGTATTAACATTATAATTTGGGGCGGGGGGGGCTTAAGTGGGTG TTTGGGTAAACAACTTGATTAAGCGCTTATGGCAATAAGCTCTTATCACGTAAGTGAAACTTACTAAAATAAGCTGAAAA TAGTTTTACTGATAAGCATAAGCTCTTATTTATAGGCTAATGTGAACAACTTATGAAAATTAGCTCAAAACGGTTTGTAG GGGGGCCATGAACTGTTTACATAAGCTCTCTCAAATTCTTGCATAAGTGCTTAAGCTGTTCCAAACGGGGCCTATATCTT TTCTTAGGTGATTTTGGCATGTGTGCAGAAGACTCGTAGAAATATCGTATGGAGGATTTGATCAGACGTAAGAGAGGTTT ATAATAAATGATCTATTTTGAGCTTGATACATGGCAGGACATTTTGATAATATTTGATTCATGTAGTTGGTCTCTCTTAA TGGTAAAATGGTTGGCTATTGTTGTATTGAAATTGATTTTTATGACTTTATGAGAGAAAAGAAATAAAGAGAAATTCACT CTGTTTCAATGCAGTGAAAGTCAAAAACTTATTGCACAGTATATGTCAGCCTTGGATGCTGAAGTTACTCATCACAAGTT CTATCCTCAATTGAATCAGTTCCATCCGCTGCACTTTTTTACCAGTCCTGATTCAGGCTTAATCTCAGAAAATATAAGCT GTTCCTTGCTAGGGGTGAACACTGTTGGAATTGTTAGAGCGCCACGTGGGGATGGCAAGGAAGCTATTGTCTTGGTAACA CCTATCAATTCGAAGAAAGTTGGTCCAGGGGAGGCTTTGTCTTTGGGCATTGCTTACTCAGTGTTCTCACTGCTTTCGCG AGTTACTTGGCTGGCGAAGGACGTTGTATGGCTTGTGGCTGATTCTCAATATGGAGAGTATTCTGCTGTGGCTGCTTGGC TAACAGAATATCAGGCCCCTGTTTCTCGTGGAATTGGCATAGTTAATAGTGAACAGTGTAATGGCAGCAACACCATTGAT GAATATGACGGGTTTAGACGTGCTGGAACTATGGCTGCAGCTCTTGTAATTAAGGTTGCAGAGCAAGGTAACCATATTGA AGACAGTATTAATATTTATGCTGAGGCGTCCAATGGCCAGATGCCGAACCTCGACCTCATCAATATTGTAAATTATCTAG CGGTGCATAAACAGGGTTTGCGGATGAAAGTGAAGAAGATGTGGTCTCTACTTGGATCCAGGTGGCTCAATACTTTAGGT GTTATATTTGAATCTTTGGGACATATTGCTAGAAGCTTAGATCCTAAATGGAAATTCAGTATTCCTGCTGCTGAATATGT TGAGGGCGCTGCTACCCTGGCAAGTTCATTGTATTACCAGGTGCTTTACTTTTACCCCATCTAAAAAGTGTTTATTATTT TATTCCCTCTGGCCTCTTCATAAATATTCTGTGTCTGTGTATTATTCTTCACAGGGTTTGGGTGTTCCCACTGGTCCTCA TGGTGCCTTCCGTGACTATCAAGTTGATGCAATTACTCTGGAAATTCTTCCAAAAGTTTCTCCTGCTAAAATGATCAGGC GTAATGATTTCATGCTCCGTGGCGGAAGGTATGTGTAGTTGTCACTCATACAAGTTGCATTTGTAACAATCATTGAATAA ATGGCTGGCCTGTCCATCAATTGATTTATCGTACAGATTTTACAATAGTCAAGTCTATTATGGTGATTCCCATCTGCTTA TGTTTGCCATTTACTAGCAAGCTACTGCACAGAAACTAAGAATATCTTGTATTTGTTTTTAGAAACTAAAGAAAGTGAGA AGTACTAGGTAATTAGTTGAAGGCTCAGTCCACTTTCAATCTTGTATCCTTGTTTTTTCTTTTGCCAATTGTGGGTGGGT GGGGGGGGGGTGCTTGTGATGGGAAACTGGGGGTTTCTTGTGGTTGGAAATTGTTATTCTTATAACTAGCATATGTTAAT TCTATAGAATGTTATTTAGCTTTCACATTTCAAAGCAAGCCAGAATACCTTTCTCTCTTTGTTTGATCCCCGGTGGCGGT CATAACATTTCCTTCTTGTTGCAGGTTGATTGAAGGAATCATACGCTCAATAAACAACCTTCTTGAGAAGTTTCATCAAT CGTTCTTTTTGTACCTCTTGACATCCCCTAGTAAGTTTGTGTCGGTTGGCGTTTACATGATTCCATTTGCATTACTTGTT GCGCCGCTTCCAATAGTTGCGGCTTCCCTCCATGCTGATGCTAATAAATCCACTCCCCTAGCCACACCTGCCTCTGAAGT TGATGTCAACCGCAAATCTTGGAAATGGCTGAACTCAGCCAGAAAGGTCTTGGTCATTCATTTATGGGGTGCTGTTGTCT CCTTACTCCCATATTTCCTATGCCAAATACCCAATACCACGGCAACAACAAACTTTATAACATGGGGTTTGCTATCAGCT TTTAGTCTCGTAATTCTGTCCTTGATATTGGGCTCTCCAATTTTTGAAACTGCAGCATCTCAACCTGAGAAAAGTGAATG GGCTAGCTTAAAGTCTGTAACCATATCAACCACTTTCATTGGTTTATCTCTCATGTCAGTCATTAACTTTGCTACAGCAG AAATCGGGGCTTTACTCATCGTCCCGATTTGTCTAATGGCTCGACCATTGAGGCTTGATGTTCAAGCTAGGAGCTTGAGA ACCTTACTAAGGGCCATTTGTAATCTTGCTTTAGGTTTTATTGGGTTTCCGCCAGTTGCATATGTTCTAATGAAAGGCAC GTTTGAAGGTTTTCATGGTACTAATGTTGGTGACTATTGGAATTGGGTGGAATCCCTTTGGACATGGAACAGTGCCACTT ACCTCTACGTAGGTGTTGTTCATCTGCCATGCTGGGCACTGTGTGTTCACATTTTATTTCATCATTGTTGA
CDS sequence (LotjaGi2g1v0241400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGCCTTGGATGCTGAAGTTACTCATCACAAGTTCTATCCTCAATTGAATCAGTTCCATCCGCTGCACTTTTTTAC CAGTCCTGATTCAGGCTTAATCTCAGAAAATATAAGCTGTTCCTTGCTAGGGGTGAACACTGTTGGAATTGTTAGAGCGC CACGTGGGGATGGCAAGGAAGCTATTGTCTTGGTAACACCTATCAATTCGAAGAAAGTTGGTCCAGGGGAGGCTTTGTCT TTGGGCATTGCTTACTCAGTGTTCTCACTGCTTTCGCGAGTTACTTGGCTGGCGAAGGACGTTGTATGGCTTGTGGCTGA TTCTCAATATGGAGAGTATTCTGCTGTGGCTGCTTGGCTAACAGAATATCAGGCCCCTGTTTCTCGTGGAATTGGCATAG TTAATAGTGAACAGTGTAATGGCAGCAACACCATTGATGAATATGACGGGTTTAGACGTGCTGGAACTATGGCTGCAGCT CTTGTAATTAAGGTTGCAGAGCAAGGTAACCATATTGAAGACAGTATTAATATTTATGCTGAGGCGTCCAATGGCCAGAT GCCGAACCTCGACCTCATCAATATTGTAAATTATCTAGCGGTGCATAAACAGGGTTTGCGGATGAAAGTGAAGAAGATGT GGTCTCTACTTGGATCCAGGTGGCTCAATACTTTAGGTGTTATATTTGAATCTTTGGGACATATTGCTAGAAGCTTAGAT CCTAAATGGAAATTCAGTATTCCTGCTGCTGAATATGTTGAGGGCGCTGCTACCCTGGCAAGTTCATTGTATTACCAGGG TTTGGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGTGACTATCAAGTTGATGCAATTACTCTGGAAATTCTTCCAAAAG TTTCTCCTGCTAAAATGATCAGGCGTAATGATTTCATGCTCCGTGGCGGAAGGTTGATTGAAGGAATCATACGCTCAATA AACAACCTTCTTGAGAAGTTTCATCAATCGTTCTTTTTGTACCTCTTGACATCCCCTAGTAAGTTTGTGTCGGTTGGCGT TTACATGATTCCATTTGCATTACTTGTTGCGCCGCTTCCAATAGTTGCGGCTTCCCTCCATGCTGATGCTAATAAATCCA CTCCCCTAGCCACACCTGCCTCTGAAGTTGATGTCAACCGCAAATCTTGGAAATGGCTGAACTCAGCCAGAAAGGTCTTG GTCATTCATTTATGGGGTGCTGTTGTCTCCTTACTCCCATATTTCCTATGCCAAATACCCAATACCACGGCAACAACAAA CTTTATAACATGGGGTTTGCTATCAGCTTTTAGTCTCGTAATTCTGTCCTTGATATTGGGCTCTCCAATTTTTGAAACTG CAGCATCTCAACCTGAGAAAAGTGAATGGGCTAGCTTAAAGTCTGTAACCATATCAACCACTTTCATTGGTTTATCTCTC ATGTCAGTCATTAACTTTGCTACAGCAGAAATCGGGGCTTTACTCATCGTCCCGATTTGTCTAATGGCTCGACCATTGAG GCTTGATGTTCAAGCTAGGAGCTTGAGAACCTTACTAAGGGCCATTTGTAATCTTGCTTTAGGTTTTATTGGGTTTCCGC CAGTTGCATATGTTCTAATGAAAGGCACGTTTGAAGGTTTTCATGGTACTAATGTTGGTGACTATTGGAATTGGGTGGAA TCCCTTTGGACATGGAACAGTGCCACTTACCTCTACGTAGGTGTTGTTCATCTGCCATGCTGGGCACTGTGTGTTCACAT TTTATTTCATCATTGTTGA
Protein sequence (LotjaGi2g1v0241400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSALDAEVTHHKFYPQLNQFHPLHFFTSPDSGLISENISCSLLGVNTVGIVRAPRGDGKEAIVLVTPINSKKVGPGEALS LGIAYSVFSLLSRVTWLAKDVVWLVADSQYGEYSAVAAWLTEYQAPVSRGIGIVNSEQCNGSNTIDEYDGFRRAGTMAAA LVIKVAEQGNHIEDSINIYAEASNGQMPNLDLINIVNYLAVHKQGLRMKVKKMWSLLGSRWLNTLGVIFESLGHIARSLD PKWKFSIPAAEYVEGAATLASSLYYQGLGVPTGPHGAFRDYQVDAITLEILPKVSPAKMIRRNDFMLRGGRLIEGIIRSI NNLLEKFHQSFFLYLLTSPSKFVSVGVYMIPFALLVAPLPIVAASLHADANKSTPLATPASEVDVNRKSWKWLNSARKVL VIHLWGAVVSLLPYFLCQIPNTTATTNFITWGLLSAFSLVILSLILGSPIFETAASQPEKSEWASLKSVTISTTFIGLSL MSVINFATAEIGALLIVPICLMARPLRLDVQARSLRTLLRAICNLALGFIGFPPVAYVLMKGTFEGFHGTNVGDYWNWVE SLWTWNSATYLYVGVVHLPCWALCVHILFHHC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 592 | 592 | 5.1E-169 | ||
| Phobius | 1 | 341 | 341 | - | – | |
| PANTHER | 1 | 590 | 590 | 2.0E-173 | – | |
| PANTHER | 1 | 590 | 590 | 2.0E-173 | ||
| Pfam | 44 | 584 | 541 | 1.8E-124 | ||
| Phobius | 342 | 366 | 25 | - | – | |
| TMHMM | 342 | 364 | 23 | - | – | |
| Phobius | 367 | 398 | 32 | - | – | |
| TMHMM | 399 | 416 | 18 | - | – | |
| Phobius | 399 | 416 | 18 | - | – | |
| Phobius | 417 | 427 | 11 | - | – | |
| Phobius | 428 | 451 | 24 | - | – | |
| TMHMM | 429 | 451 | 23 | - | – | |
| Phobius | 452 | 470 | 19 | - | – | |
| Phobius | 471 | 497 | 27 | - | – | |
| TMHMM | 475 | 497 | 23 | - | – | |
| Phobius | 498 | 517 | 20 | - | – | |
| TMHMM | 518 | 540 | 23 | - | – | |
| Phobius | 518 | 540 | 23 | - | – | |
| Phobius | 541 | 569 | 29 | - | – | |
| TMHMM | 568 | 590 | 23 | - | – | |
| Phobius | 570 | 589 | 20 | - | – | |
| Phobius | 590 | 592 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Cellular component | GPI-anchor transamidase complex | An enzyme complex which in humans and yeast consists of at least five proteins; for example, the complex contains GAA1, GPI8, PIG-S, PIG-U, and PIG-T in human, and Gaa1p, Gab1p, Gpi8p, Gpi16p, and Gpi17p in yeast. Catalyzes the posttranslational attachment of the carboxyl-terminus of a precursor protein to a GPI-anchor. |
Expression pattern of LotjaGi2g1v0241400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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