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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0242200 |
| Transcript ID | LotjaGi2g1v0242200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oleosin; TAIR: AT3G01570.1 Oleosin family protein; Swiss-Prot: sp|Q9SS98|OLEO5_ARATH Oleosin 5; TrEMBL-Plants: tr|F6J041|F6J041_TRIRP Putative oleosin; Found in the gene: LotjaGi2g1v0242200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:70502878..70504063) extracted from Lotus japonicus Gifu genome v1.2.
TTTCCCTTTTGGGTATGACATGTAACCAAAGCTTCCCTGAAACCTGTTCCTCATGCAAACCCCTTACTCACCATGTCACA CGCACGTGTCACCACCCTGCATCTCCACCGTTCTATAAAACACCACACACTTCATTCTATAATATTCATCACTCACTCAC ATGTTCACACAACACAATCCTCAATAATCTCCACTCTCGAAATTAACCTTGTTTGATTACTCTAAAAAATGGCACAACCC CAACAACAAGTGCATGTCCACACCACCGCAACACACCGCTATGAAACCGGCGGTGCCAACCCGCCACAACGCTACGAAGC CGGCGGCATCAATTTCAACAACCAGCCACAACGCTACGGAGGAGGAGGAGGAGGTTTCAGTTCCCTCTTCCCGGAGAGAG GCCCCTCAGCCTCCCAAATCATTGCTGTCGCTGCCGGTGTCCCCATCGGCGGAACGCTCCTCCTCCTCGCCGGAATCTCC CTCATCGCCAGCCTCATTGGGCTGGCGGTATTCACACCGCTCCTCATCCTGTTCAGCCCGGTCATAGTCCCTGCTGTCAT GACCATTGGCCTTGCAGTGGCCGGGATCTTGACATCAGGGGCGTTCGGGCTGACCGGGTTGATGTCATTCTCGTGGCTGA TGAACTACATTCGGGAGACGCGGGGGATTGTGCCGGAGCAGCTAGATTATGCGAAGAACCGCATGGCGGACATGGCGGAT TACGTGGGGCAGAAGACTAAGGAGGTTGGACATGACATACAGACAAAGGCGCATGAAGCCAAGAGGACACCAATCACAAC ACATGACACAAAATGATCAATAGCGGCGGTTTGGGTTTTATATCATGGTTAGATTTATATATAATGTGGGGAAAATAAAA TCAGTGGCACCATGTTTGGTACTTTTGTATGTATGTACGTACTTTGGAGGAGTTTTTCGTCCTTTGTGTTGTGGGGGGTT TTCTTCGATCTATCTTGGCTTTGTGTTGTTGTTTGTTTGATAGTTCTTGTGAATGTGTGTTAATTTGTATTTGTTCCACT TGCATTAATTGTTCAATTTCATGTTTAATATATATAATGTAATGTAACCACACGCACAATCACTTGCATTACCCTGGTTT TTCTATCAATTCCATGTTCATATCCTCATGAAGTACTCCTAATTATGTCAATGATTATATATGAGC
CDS sequence (LotjaGi2g1v0242200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACAACCCCAACAACAAGTGCATGTCCACACCACCGCAACACACCGCTATGAAACCGGCGGTGCCAACCCGCCACA ACGCTACGAAGCCGGCGGCATCAATTTCAACAACCAGCCACAACGCTACGGAGGAGGAGGAGGAGGTTTCAGTTCCCTCT TCCCGGAGAGAGGCCCCTCAGCCTCCCAAATCATTGCTGTCGCTGCCGGTGTCCCCATCGGCGGAACGCTCCTCCTCCTC GCCGGAATCTCCCTCATCGCCAGCCTCATTGGGCTGGCGGTATTCACACCGCTCCTCATCCTGTTCAGCCCGGTCATAGT CCCTGCTGTCATGACCATTGGCCTTGCAGTGGCCGGGATCTTGACATCAGGGGCGTTCGGGCTGACCGGGTTGATGTCAT TCTCGTGGCTGATGAACTACATTCGGGAGACGCGGGGGATTGTGCCGGAGCAGCTAGATTATGCGAAGAACCGCATGGCG GACATGGCGGATTACGTGGGGCAGAAGACTAAGGAGGTTGGACATGACATACAGACAAAGGCGCATGAAGCCAAGAGGAC ACCAATCACAACACATGACACAAAATGA
Protein sequence (LotjaGi2g1v0242200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQPQQQVHVHTTATHRYETGGANPPQRYEAGGINFNNQPQRYGGGGGGFSSLFPERGPSASQIIAVAAGVPIGGTLLLL AGISLIASLIGLAVFTPLLILFSPVIVPAVMTIGLAVAGILTSGAFGLTGLMSFSWLMNYIRETRGIVPEQLDYAKNRMA DMADYVGQKTKEVGHDIQTKAHEAKRTPITTHDTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 60 | 60 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 4 | 185 | 182 | 1.1E-66 | – | |
| PANTHER | 4 | 185 | 182 | 1.1E-66 | ||
| Phobius | 61 | 80 | 20 | - | – | |
| Pfam | 62 | 174 | 113 | 2.2E-43 | ||
| TMHMM | 64 | 86 | 23 | - | – | |
| Phobius | 81 | 86 | 6 | - | – | |
| Phobius | 87 | 107 | 21 | - | – | |
| TMHMM | 88 | 110 | 23 | - | – | |
| Phobius | 108 | 112 | 5 | - | – | |
| Phobius | 113 | 137 | 25 | - | – | |
| TMHMM | 115 | 137 | 23 | - | – | |
| Phobius | 138 | 195 | 58 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Monolayer-surrounded lipid storage body | A subcellular organelle of plant cells surrounded by 'half-unit' or a monolayer membrane instead of the more usual bilayer. The storage body has a droplet of triglyceride surrounded by a monolayer of phospholipids, interacting with the triglycerides and the hydrophilic head groups facing the cytosol, and containing major protein components called oleosins. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0242200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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