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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0245300 |
| Transcript ID | LotjaGi2g1v0245300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT4G22165.1 F-box protein (DUF295); Swiss-Prot: sp|P0CG94|FB347_ARATH Probable F-box protein At4g22165; TrEMBL-Plants: tr|G7KT61|G7KT61_MEDTR F-box protein; Found in the gene: LotjaGi2g1v0245300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71008233..71009522) extracted from Lotus japonicus Gifu genome v1.2.
AAAGATAACATATATTCACTTCTACCAAACTTTCAAACCATAAACACGTTTTTATTCCTCCATTAATATGATCTGATCTG AGGAATATAATTGTGTTCTGCAATGGGGCAAGGAGAAGTGAGTAACAGTTGGTCAGATATCCCACAGGACTTATTGGAGG AGATTGTACGGAAGTTAACCTTAGTGGATTACCTCAATTGTCGACGAGTATGTCAGTCATGGCGGCGCATAGTTAAAGAT GCTGTCGCAACCAAGGGAACATGTCCCCCTGCTCGTCAATTCCCATTCCTGATGTTGCTTCCTCCTAATTTTCAGAACAA AAATCCTGTCACTACTCTTTTAGACATCACACAAGAAAACAACACCTCTTACACCATCCCAATCCCTCAAACGTGGAGGG GTTGTTTTGATTTTGATAGGGTCTTTTCAGTGCAAGGATGGGTGGTGTTCCAGAAAATCTATTATAAGGAAAACTGGAAT TATGATTTGCTTCTGTTTTGCAATCCAGTGTCTGGTGAACGGTTTGAGCTCCCACATTTGCCACTGTTTCAGGGTCAGGA TTTTACTCATAAAATTTATGTTAAACCAGTGTTCTCTACAGCACCACCAAATTCCTCAGACTTTGTTGTGGTGCTTTGTG CTATTTTATACCTACCGCAAGAAGATCGATGGAGGCATCAGTTAGCTTTTTACAAGGTGACCGACAAGAAGTGGGCTCTA ATTCCAACCGATCAATCTCAAAGATTTTCTGAGTTTGTAATTCTTGATAGGAAATTATATGCTATGAGTATGCTTTTATA TAAATCAGGTTGTGTTACTGTTTTTAATCTCACAGACTCCAATAACATTACATTTGAGAAGCTGGAACCAGAACGAATTC AACCTGTCCTCTCCCGTACATGCATGTTGGCAAGAGATGGGGATGAGATCTTGCTAGTTGTTCCTGATAGTAGGATAATA CGTGAGATAACAGGATTTTGTGTGTTTAAACTTGACATGATGTGTGGCGGCTCCAGATGGATAGAGGTTGATGACTTGGG TGACCTTGTTTTGCTAATGGATTCTGCTGGAATTCAAGTTATATCTGCTAAGGATATTAATCTTCCTAGAAAGTTGAGTG AAGGCAATTGTATTATCTTTTATAGTGTGGAGCGTGATCTTAAGGTATTCTCTTTAAAGGATAAGAGAATTAGAAAATTT CCTCTCTCACAAGTCTCTGGTGATCGAAGTTTGTGGCTCATGCCTAGTCTTTGGTAGAAAAACAAGGGTTGTATTTATTT TCAATGCATG
CDS sequence (LotjaGi2g1v0245300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCAAGGAGAAGTGAGTAACAGTTGGTCAGATATCCCACAGGACTTATTGGAGGAGATTGTACGGAAGTTAACCTT AGTGGATTACCTCAATTGTCGACGAGTATGTCAGTCATGGCGGCGCATAGTTAAAGATGCTGTCGCAACCAAGGGAACAT GTCCCCCTGCTCGTCAATTCCCATTCCTGATGTTGCTTCCTCCTAATTTTCAGAACAAAAATCCTGTCACTACTCTTTTA GACATCACACAAGAAAACAACACCTCTTACACCATCCCAATCCCTCAAACGTGGAGGGGTTGTTTTGATTTTGATAGGGT CTTTTCAGTGCAAGGATGGGTGGTGTTCCAGAAAATCTATTATAAGGAAAACTGGAATTATGATTTGCTTCTGTTTTGCA ATCCAGTGTCTGGTGAACGGTTTGAGCTCCCACATTTGCCACTGTTTCAGGGTCAGGATTTTACTCATAAAATTTATGTT AAACCAGTGTTCTCTACAGCACCACCAAATTCCTCAGACTTTGTTGTGGTGCTTTGTGCTATTTTATACCTACCGCAAGA AGATCGATGGAGGCATCAGTTAGCTTTTTACAAGGTGACCGACAAGAAGTGGGCTCTAATTCCAACCGATCAATCTCAAA GATTTTCTGAGTTTGTAATTCTTGATAGGAAATTATATGCTATGAGTATGCTTTTATATAAATCAGGTTGTGTTACTGTT TTTAATCTCACAGACTCCAATAACATTACATTTGAGAAGCTGGAACCAGAACGAATTCAACCTGTCCTCTCCCGTACATG CATGTTGGCAAGAGATGGGGATGAGATCTTGCTAGTTGTTCCTGATAGTAGGATAATACGTGAGATAACAGGATTTTGTG TGTTTAAACTTGACATGATGTGTGGCGGCTCCAGATGGATAGAGGTTGATGACTTGGGTGACCTTGTTTTGCTAATGGAT TCTGCTGGAATTCAAGTTATATCTGCTAAGGATATTAATCTTCCTAGAAAGTTGAGTGAAGGCAATTGTATTATCTTTTA TAGTGTGGAGCGTGATCTTAAGGTATTCTCTTTAAAGGATAAGAGAATTAGAAAATTTCCTCTCTCACAAGTCTCTGGTG ATCGAAGTTTGTGGCTCATGCCTAGTCTTTGGTAG
Protein sequence (LotjaGi2g1v0245300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQGEVSNSWSDIPQDLLEEIVRKLTLVDYLNCRRVCQSWRRIVKDAVATKGTCPPARQFPFLMLLPPNFQNKNPVTTLL DITQENNTSYTIPIPQTWRGCFDFDRVFSVQGWVVFQKIYYKENWNYDLLLFCNPVSGERFELPHLPLFQGQDFTHKIYV KPVFSTAPPNSSDFVVVLCAILYLPQEDRWRHQLAFYKVTDKKWALIPTDQSQRFSEFVILDRKLYAMSMLLYKSGCVTV FNLTDSNNITFEKLEPERIQPVLSRTCMLARDGDEILLVVPDSRIIREITGFCVFKLDMMCGGSRWIEVDDLGDLVLLMD SAGIQVISAKDINLPRKLSEGNCIIFYSVERDLKVFSLKDKRIRKFPLSQVSGDRSLWLMPSLW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 7 | 53 | 47 | 10.796 | ||
| PANTHER | 8 | 365 | 358 | 1.2E-38 | – | |
| PANTHER | 8 | 365 | 358 | 1.2E-38 | – | |
| SUPERFAMILY | 8 | 74 | 67 | 4.32E-11 | ||
| Gene3D | 9 | 48 | 40 | 2.1E-10 | – | |
| Pfam | 9 | 46 | 38 | 1.1E-11 | ||
| SMART | 13 | 53 | 41 | 5.0E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0245300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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