Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0247300 |
| Transcript ID | LotjaGi2g1v0247300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium homeostasis regulator CHoR1, putative; TAIR: AT3G55250.1 calcium homeostasis regulator; Swiss-Prot: sp|Q5Z8V7|HACL2_ORYSJ Probable histone acetyltransferase HAC-like 2; TrEMBL-Plants: tr|I3TA09|I3TA09_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0247300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71263496..71266681) extracted from Lotus japonicus Gifu genome v1.2.
ACCCGGATAACATATATAAACGAGAGGCCAGGAAACAAACTCAACGAGATTAACCTCCAAAACCCTCTCCCTCCTCTGTT TTCCAAACATGGTGGTGTTAAAATCCACTTCTCCACTATCCCCATCTTCATCTCTCCAACCCCATCATTTCTCCAAACTC ACCTCTCCATCTTCTCTCCTCTTCCTCCGCCACCATGTTCACCCTCAACGCTCCGCCACAGCTTCCAGAGCTGCAGCTCA CTTCACCATCAGAGCTTACATGGAGAAACCGAACTCGTTTGCCAGCTTCGCTAACAAGGTCATCGGTGCGCTTCCAGTAG TTGGCCTCCTCGCTAGGATCATGGCTGATGAAGGTGGTGTTGGTGATGACCTCGTTGATTTTGCTGAGTTTCGAAGACGG GTTGGCAAGAAGTGTAGTATTGCTGATTCCAAAGCTTTTTATCAGTTCCAAAAGCGACGAGGAAAGGTATTGGATTATTT AGCTTGCACCCCGTTAACAAACTCTCATCTGGGTTTCTCTAGTTTTAACTCATGATGTTGAAAGTATGCTCAAAATTCTA TCTTTGTGTACTTAAAGACAAGGTTGACAATGAATTATTTAAATTCGCCTCGTAATCGAATTTGGACCTTGGGTGTTATA TTTGAACTTAAAAGAAGTTGATTTCATGGTCAGAAGTCAAAACTTGAACTGTATAAGCTTAAATTTGATGATGCCCCGTT TGGAGGAGCTTGAGTTTAGCTTATATAGCATAAGCGCTTATGCAAATGTTTGAGAGAGCTTATGAATAAGCGGCTAAGCG CTTATGCTTATCCATAACTTATTTTCAGCTTTATTTCAATAAGTTCCTCGAATTAGCTTAGTTTATGAATAAGCGCTTCT GCGATAAGAGCTGACCATCCTAAGCTGTTTACCCAAACACACCCGAAGAATGGTAATGAATTGTTTAAGCCCCAGTCCAT AATCAAATTTTGACTTTTGGGTTTTGAAGTCAAACTTAATGAGGCTGGTTTCATGATTTAAAATCAATCTAGCACCCTAC AAACGATGAAGGTTAATCCATTTTTTTTCCCTTTTTATTCTGCACATTGTTTTGTGGTATCAGTTGGTTTTGGTTTTGGT GTGCTAAAACTGGAATGGGTGAATGATTGTGTGTCTGACTTGGTGTTATTTTGTTGTGTCTAGGAAGGGGAGCCTCTCTA TGTTCTGTTATGCTGTTGGCTAGCAGCCATTGGTGCAGGTCTTCTCAAAACTGAGGAGATTTTGGAAGGTGCGGCGAGGC TCCGCGTCTCGGATGACATTGAATTTGAGGAGCAGACGTTCATAGCCTTGATGAATGAGGCAAGAGAGGTTGGTCTCCAT CTCCCGATGAATATCACTGTGACCAGTTGTTGTGTATCCATCTTTGAAAGCCATTCCATTTTAAATCATGCTGCATTTGA AGGGAACTACTCGTATGTCAGTTTGCATTAACTGACTGAGTCACTCTGAATATCTTGTCTGAAGTCTAAACTCTAAACAG TTAACACAATAGTCCGAAGACATGTTGGCTTTAAAGGGTTTCTGCAAAGCTTATCATTATTCTCTTGTTTGATACGATCA TTAGCATGGTTCTAACACCATCTTAGATTTGGGTTAGGTAGTACGCTACCCTAAAAGTTAGCTTAGGTGTGAGGGTTGCT CTACCATTTTTAAGGATTTAGTTTATCACATCTCTAGTCAATGTGATACTTTTCGACACACCCCTTCATGACTAGAGCTG GGCATTTGCAGGTGGCCTATATATGGATGGCCTCCGATAAATTGATCCAAGATTGACTCTAATACCATCTTACAATTTGA GTTAGACTTAACTCTACCCCCAAAAACTGGCTTAGAGGTGATGAACTGATGATTGCTTTACCCTATATAAGGACTTATTT GGCCATATCTCTAGTCAATATGAGAGTTTAACAGGTTAATGTTTTACTCCAGCCTAAATAAATCCTCTATGTAATGAAAA TAAATTTGTACAATAGCTTACCACAATGGCAAAAAAACTGCTAATGGAACATTCTTTTCTTGGCATCGTCAAATAGTTAC TATAAAAAACTTACTTTTCTAGTAGCTCTTGCACTGTGATTCATTGTGTCATATGTATCAACATCATTTCCATCATTTGT GAAATGGGCCTTCCAATAAAACATAAAATTACGTAGATGTCCATTCATTCTGTATTCAGGGAGTGCTGTAAATGGTAAAT GGTCCAGCTATTTATGTCACTAATGCTCCACCTGTATGCTTGATGCTTTGATTTCACTGAAGCTGAAAGTTATAATTATA TGCTACTGCCCCAACGACTGAAAAAAATTATGTTCAACACTGTAGAGACGGGCAAAGCTAAAGACTGCACCTCCGGCTTT ACCAATGGAGATTCGAGTCCAGAAGGCTCTTGATGCTATCTATGTTTGTTCTTTTTGGAAGGACCCTGTAGAGCAAGAAG ACGAGTTATTGCTGACTACTATGCTTAGTACTGTTTTTCCATCAGTTCAGGGACAAGAGATCGAGCGCCTTGTCAAAGAA AAGGCAGAGAAAGTAGCAGCAGGAGTTATTGATTATGATGTTCCAGATTTCAAGCTCCCATCAAAAGAAGCTGTTGAACT GCAGATGAAAGATCTCCAGTTCCTTAGACAAAATAGTGAGACTTAACCAGGTGAAGCCTGTGATTTTTAACACTCGTGTA TTGAATGAAATTATACCTCGGAAACTTGGCTGTTTTAGCCTTTCTGGATACTCACAGAGAAAATTACAGTGATCCCCCCT GATCCTAGATCTTATTCTATTATTTTTCAGATCCATATTGAAACCTGGGGTATTACTTTTTTTGAAGATGCAGATATTCC GTGTAATTATTTTACAATGTTAGTAAAAGAACAAAATAATAAGTTGTTTCTCAAATCCCCCCCCCCCCCCCCCCAACTTT CAAGTGATCCAGTTCTTTCCTTCATCATCCTGCTTGTTAGTTGTTACAAATTGACAACATGTATTGTGGCAATTAATAGA CACCAGAAGGTGTTAAAAATAATTAGCTAATCAAAAGTGAAAGGGTACATTAATAGAGAAAATGTAAAATTATAATCATT AATTGGAAGATTAATCAAGTGAGAATACAGTAAGATACATATTTAGAGATTGCCATAACTTATTAC
CDS sequence (LotjaGi2g1v0247300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGTGTTAAAATCCACTTCTCCACTATCCCCATCTTCATCTCTCCAACCCCATCATTTCTCCAAACTCACCTCTCC ATCTTCTCTCCTCTTCCTCCGCCACCATGTTCACCCTCAACGCTCCGCCACAGCTTCCAGAGCTGCAGCTCACTTCACCA TCAGAGCTTACATGGAGAAACCGAACTCGTTTGCCAGCTTCGCTAACAAGGTCATCGGTGCGCTTCCAGTAGTTGGCCTC CTCGCTAGGATCATGGCTGATGAAGGTGGTGTTGGTGATGACCTCGTTGATTTTGCTGAGTTTCGAAGACGGGTTGGCAA GAAGTGTAGTATTGCTGATTCCAAAGCTTTTTATCAGTTCCAAAAGCGACGAGGAAAGGAAGGGGAGCCTCTCTATGTTC TGTTATGCTGTTGGCTAGCAGCCATTGGTGCAGGTCTTCTCAAAACTGAGGAGATTTTGGAAGGTGCGGCGAGGCTCCGC GTCTCGGATGACATTGAATTTGAGGAGCAGACGTTCATAGCCTTGATGAATGAGGCAAGAGAGAGACGGGCAAAGCTAAA GACTGCACCTCCGGCTTTACCAATGGAGATTCGAGTCCAGAAGGCTCTTGATGCTATCTATGTTTGTTCTTTTTGGAAGG ACCCTGTAGAGCAAGAAGACGAGTTATTGCTGACTACTATGCTTAGTACTGTTTTTCCATCAGTTCAGGGACAAGAGATC GAGCGCCTTGTCAAAGAAAAGGCAGAGAAAGTAGCAGCAGGAGTTATTGATTATGATGTTCCAGATTTCAAGCTCCCATC AAAAGAAGCTGTTGAACTGCAGATGAAAGATCTCCAGTTCCTTAGACAAAATAGTGAGACTTAA
Protein sequence (LotjaGi2g1v0247300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVLKSTSPLSPSSSLQPHHFSKLTSPSSLLFLRHHVHPQRSATASRAAAHFTIRAYMEKPNSFASFANKVIGALPVVGL LARIMADEGGVGDDLVDFAEFRRRVGKKCSIADSKAFYQFQKRRGKEGEPLYVLLCCWLAAIGAGLLKTEEILEGAARLR VSDDIEFEEQTFIALMNEARERRAKLKTAPPALPMEIRVQKALDAIYVCSFWKDPVEQEDELLLTTMLSTVFPSVQGQEI ERLVKEKAEKVAAGVIDYDVPDFKLPSKEAVELQMKDLQFLRQNSET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 130 | 130 | - | – | |
| PANTHER | 22 | 287 | 266 | 7.8E-126 | ||
| Phobius | 131 | 147 | 17 | - | – | |
| Phobius | 148 | 287 | 140 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosystem I assembly | The aggregation, arrangement and bonding together of a set of components to form a photosystem I complex on the thylakoid membrane. |
Expression pattern of LotjaGi2g1v0247300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…