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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0248200 |
Transcript ID | LotjaGi2g1v0248200.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ARM repeat superfamily protein; TAIR: AT5G14790.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q6A070|CREC1_MOUSE Crescerin-1; TrEMBL-Plants: tr|A0A151U197|A0A151U197_CAJCA Protein FAM179B family; Found in the gene: LotjaGi2g1v0248200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71391783..71396059) extracted from Lotus japonicus Gifu genome v1.2.
CAACCCTCGTAAATAACCACTTTTGCTCTTATTTAGCAGAGCTCATCTCTTAAACATGTAGTCTTGATTTCGATTGTTAA ATTAAATCCATAGTATGAAAAAACACTATTGAGACTAGGGATTCCACTTTAATGCGTGACAATACTCGGGAATTAGTTTC TCAGTTATCGGGTCGGGTGAGGAAAAAAAATAAAGGTGGTGAAATTAATTTGGTTCACCTGATTCCGGTGTCCATCGCGA TCACATGCAAATGCAGTATTTATTATTAGCCTCCAAATTTGCCGGCCCCGGTCCAGTTCCTTCAATACGGCGTCGTTTTA GGCCTCGAAACTCTTGTCTATTTCCTTCTCTTCTCTCGTCGGTTACTATAAACGCAACCCAATCATCTCTCTTTCTTCTT CTTCTTCTTCTTCACACTGAGTTGACTCGGTCTTCGTAACTCGCTCTCTGGTCTCAGCTACTCATCGCTGTTTCTGCATT TTCTCCTCCGATCACTCTCTCTCTTCATCCGGTACTCTCTTCTCTCTCTCTCTCTCTCTCTATCTAGTTTCCACTGTAAT TGAACACGTGCTTATGATCCGTACACGCAGTGCGATTACTGTGTCATTTTGATTTTGCGTATTTGAATCGAATGCTATGA TGTTAGGGTTTGGTGTCGAAATGCGAGTGATGATTCGAGTAGTGAAGTGCATAACATACCGAGATCTTGCAGCACATTAC TGATTTTTTTTTTGGTTTTCTTGTTGATTGAATCTGTTGGTTAATCGCTTTTGATATCTACGTTGTGTTCTGATTCTTGG TTCCATTTTGATCTACTTAATCATGTGTGATGACTGGAATTATGATTTCTTATTTGGTGTATAGAGACTTGTGTGGCGTG ATTTGCTGTGTGTCTGGCTTGTTTGAAGTGGAAGTTCAGTTCTAAGATTGTAATTGGTTGCTGCAAGAATAGATTTCTTT TGAAATTCAATCTTCTTTGTTTCTTGGATTAATGAGACTGAGAACAAGGAAACATGTGAATCAGAATGAATCAAAGTTTA GGAGAGGAGTCGAAAATCACGAGTGAATCAGAATGAGGGAAATTCATTTTTGGAGTGAGATTTTTTTTAAATGTCAGTGC ACTGTAGACTAGTTACATGAACTGTTTTTTCTTGCTGAGTTCAGATCTTGACTTAAGAGTTTAATGTTGGTTGTCAGATT CCTCTCTTTAAGTTGTACTTGTTTTTAGAAATTGAATGGTGTTTTGAGTAGCTATCATTGTTGAGTTTGATCAGGTGTGT AAGACTGAAGCTGACAGCGATGTCAGAGAATGCTCTTAGGGATCTCAATACAATTCCTGGAGCTGAAAGGAAGAATGAGG ACTCCAGTAAGGCCTGTTTAACCAAGCCTTCCGCTGACAATGCTGGTGAAAATGCCGAAGAACGACAAAAGAAAAAGAGT TGCGCCTCCTTGGATTCTCCATCTGTTAATGGAAACCAGGATGGGACTGCTAATTCTGGTGTAGAGATTATAGAAGTAGA ATACATTGATTCTGAGAACTTGAATGATCTAGAAGATGTTGATACTTGTCTCAAGGTATTATGTTATCCATTTTTTGGGT AAAGGGACTAGCGGGGTTTGACAGTTGAGAACTGTTGAAATTGGCCTCGTTTAATATAGTGGGGATTTTATTTTATTTTT AGTTATTTACAGTTGATTATTGGCTTATAAGGAATTGAAACCCTGTATTATCTGAAAATAATTATTTTGGTTTTGTTACA GACCCTCTTATCTGGACTTGACTCGAAGGATTGGGTCCTGCTTTGTGATTCATTAAATAATGTACGCCGTTTATCTATAT TCCACAAGGAAGCAATGCTTGATATGCTGTAAGTTTAATTTTATATATATTATGGTTTTTAAATTCAGATATCATTGATT AGTATGTTTTGATTTTTGTTTTGATTTATTGAATTACTTATTTGTTGTCTGGTAAACAGGGGGGATGTGATCACATCTAT TGCAAAGTCCCTGAAAAATCCTAGAAGTGCTGTTTGCAAAACTGCCCTTATGACCTGCGCTGACATTTTCAGTGTTTATA ATGATCTTATAATAGATTCACTGGATCCTCTTGTAAGTCAACATTACTTATTTGTACTGGTAAATTTGCTGACACGCATT GTGGAATCAAATCATAAACTTGATAGTATTATTAGTAAATTAATGTGCTCTATGTGGAACAAATATGGTGGATGCAGCTA GTACAGCTTCTTCTCAAGTCTTCCCAGGACAAACGCTTTGTATGTGAGGCAGCGGAAAGAGCCTTGATATCAATGACTAC TTGGATTTCTCCTATTACTTTGTTGCCAAAATTGCAACCATGCCTTAAGAACAAGAATCCCCGTATTCGTGCAAAGGCAT CAATGTGCTTTTCTCGAAGTGTTCCACGACTGGTACGGGTACACATGATTTTTGCTTATATTGATGACATTTAAGACTTG TTCATATGCATGACTTTGGCCTTAAAGTGATTTTTTGTGTCACAAAAAGATAAAACAATAAAAACGTTAGGAAACAGATT AGTGATGCAAGAAAAGAACCTTTCTCACCATCGACATTGAAATCTTAAAATGTTGTTGTCTTGATTTAGAATATGATTGT TTTGTGCCAATTCTGTTTCAGTTCCAAATTTATTCAACAAAGCTTCACATCTATGTTTGATTAGGGGAATGGTTTATAAT GACCATGCATAGAAATCATGTTTTTTATTGCTATACTTCCATACATAGCCTCATTTAGTAGATGGATTGTTTTTTCAGTG ATAAAGGAGTAGAAGTCTTATTTGATAGATCGCATGTCCTAAAATTTCTTTGATCATTGGGTACATGTATTATGTTTCTT GGTTAATGCTAATCTGTTTAACCTGCTGGTAGTACTTATCTTATATCTTTCTAGTCTTATGGTGCAATCAGTGAAACTTT TGTAAAACAAGCAACATATATATACTCATATTATATCTATTTGTAAATTTCTCTTCCTCTATTTTGTTTAAAATAATTTC AGGCTTGCTTCAGTAGTTATATTAGTCAGAATACCCATATGAATGGATCCTTATAATGAGGCTGCCATAAATAGCTCAAT TGTATTTGTTACTATTTTTTGATCAATTCTTGTTATCATGTTTATAGATCCAGTGCTTCAAAATCTGTTGAAGGGTGGGT TTAGGCCATTTAATAAATGGTTGCTATACTTTTAAGTTGTTTGCATGGATGCCCTCTATAGTTGGAATTTGGAAGGGACA CAGTTAAAGTAGATAGGATAATTAGTATGGCTTAACTTTTGCAATTTGGTTTGGCGATTAAGATTTGCTGCTTTCTGTCC TTGAACTGTATTTGAACAGGGTGCAGAAGGCATAAAGACATACGGGATTGACAAATTGATCCAAGTAGCTGCAGCACAGT TGAGTGACCAGCTCCCTGAGTCCAGGGAAGCGGCTCGAGCTCTCCTCATTGAGCTTCAAAATGTGTATGAGAAATTTCAG GATCTTATGCCAGCTACTGTCTCTGAGCAGCCGGAAACTGTCTCTGAGCAGCCGGAGACTGTCTCTGAGAAGCCGGAGCC AGGATCTTGGGAGAGCTTCTGCCAGTCACAACTTTCTCCTTTAAGTGCTCAAGCTGTACTTCGTGTTACCAGTATCGCTA GGGAAGGTCTTGTTTCATGACATACGCATAAGCTTCACTTACCATACTTCACGATTTCCTGGTTTGCTTGTCATTTTTCT TCTGTAAATACAGTGCGACAATTGAGATGATTGAGTTGCTGTCGAAGCACGTATGAGCTGAAGATTTATGATGTATTTTT TCCCTAGTTGTGGTTACCTATGTTACCTTGATTCATATTTGATAGATATATAAATCACGTTAATTCCGTTGTTCCATGTT TTTGCTATCTGCTTCTATAAAAATTAAAATTCTTTCCTTTAATGAGGATTGTGAGGTTTGAGGACTCATTCTGTGTATCT CAATTGTGTAATTCATGACCAAGGCACCTGTAATTGTGCATCTTCATAACAATGTCATGCTATATTAAAGCATTTTCCTG TTAGATAATTCACAAAGTTTAGAGGTTGAATGATGCAGTCATTATTGGGAATAGTCTCAGGTGGAAGAAATGCTGCAATA TATAGAGCAAACAAATGTTGGTTTTAATCATCCTCTTGTTTAACTGGTGAACGATGTTAAGTTGGTTCAGGTGTTACATC CTGGTTTCTCTTGTCAATATGTCTCTATCATTTCTCC
CDS sequence (LotjaGi2g1v0248200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGAGAATGCTCTTAGGGATCTCAATACAATTCCTGGAGCTGAAAGGAAGAATGAGGACTCCAGTAAGGCCTGTTT AACCAAGCCTTCCGCTGACAATGCTGGTGAAAATGCCGAAGAACGACAAAAGAAAAAGAGTTGCGCCTCCTTGGATTCTC CATCTGTTAATGGAAACCAGGATGGGACTGCTAATTCTGGTGTAGAGATTATAGAAGTAGAATACATTGATTCTGAGAAC TTGAATGATCTAGAAGATGTTGATACTTGTCTCAAGACCCTCTTATCTGGACTTGACTCGAAGGATTGGGTCCTGCTTTG TGATTCATTAAATAATGTACGCCGTTTATCTATATTCCACAAGGAAGCAATGCTTGATATGCTGGGGGATGTGATCACAT CTATTGCAAAGTCCCTGAAAAATCCTAGAAGTGCTGTTTGCAAAACTGCCCTTATGACCTGCGCTGACATTTTCAGTGTT TATAATGATCTTATAATAGATTCACTGGATCCTCTTCTAGTACAGCTTCTTCTCAAGTCTTCCCAGGACAAACGCTTTGT ATGTGAGGCAGCGGAAAGAGCCTTGATATCAATGACTACTTGGATTTCTCCTATTACTTTGTTGCCAAAATTGCAACCAT GCCTTAAGAACAAGAATCCCCGTATTCGTGCAAAGGCATCAATGTGCTTTTCTCGAAGTGTTCCACGACTGGGTGCAGAA GGCATAAAGACATACGGGATTGACAAATTGATCCAAGTAGCTGCAGCACAGTTGAGTGACCAGCTCCCTGAGTCCAGGGA AGCGGCTCGAGCTCTCCTCATTGAGCTTCAAAATGTGTATGAGAAATTTCAGGATCTTATGCCAGCTACTGTCTCTGAGC AGCCGGAAACTGTCTCTGAGCAGCCGGAGACTGTCTCTGAGAAGCCGGAGCCAGGATCTTGGGAGAGCTTCTGCCAGTCA CAACTTTCTCCTTTAAGTGCTCAAGCTGTACTTCGTGTTACCAGTATCGCTAGGGAAGGTCTTGTTTCATGA
Protein sequence (LotjaGi2g1v0248200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSENALRDLNTIPGAERKNEDSSKACLTKPSADNAGENAEERQKKKSCASLDSPSVNGNQDGTANSGVEIIEVEYIDSEN LNDLEDVDTCLKTLLSGLDSKDWVLLCDSLNNVRRLSIFHKEAMLDMLGDVITSIAKSLKNPRSAVCKTALMTCADIFSV YNDLIIDSLDPLLVQLLLKSSQDKRFVCEAAERALISMTTWISPITLLPKLQPCLKNKNPRIRAKASMCFSRSVPRLGAE GIKTYGIDKLIQVAAAQLSDQLPESREAARALLIELQNVYEKFQDLMPATVSEQPETVSEQPETVSEKPEPGSWESFCQS QLSPLSAQAVLRVTSIAREGLVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 64 | 64 | - | – | |
PANTHER | 36 | 334 | 299 | 9.0E-106 | – | |
PANTHER | 36 | 334 | 299 | 9.0E-106 | – | |
MobiDBLite | 49 | 64 | 16 | - | – | |
Gene3D | 69 | 301 | 233 | 1.0E-36 | ||
SMART | 77 | 311 | 235 | 1.4E-14 | ||
SUPERFAMILY | 85 | 282 | 198 | 9.46E-17 | ||
Pfam | 123 | 281 | 159 | 1.2E-8 | ||
MobiDBLite | 291 | 313 | 23 | - | – | |
MobiDBLite | 291 | 306 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0248200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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