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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0248200 |
| Transcript ID | LotjaGi2g1v0248200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ARM repeat superfamily protein; TAIR: AT5G14790.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q6A070|CREC1_MOUSE Crescerin-1; TrEMBL-Plants: tr|A0A151U197|A0A151U197_CAJCA Protein FAM179B family; Found in the gene: LotjaGi2g1v0248200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71393082..71395482) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCAGAGAATGCTCTTAGGGATCTCAATACAATTCCTGGAGCTGAAAGGAAGAATGAGGACTCCAGTAAGGCCTGTTT AACCAAGCCTTCCGCTGACAATGCTGGTGAAAATGCCGAAGAACGACAAAAGAAAAAGAGTTGCGCCTCCTTGGATTCTC CATCTGTTAATGGAAACCAGGATGGGACTGCTAATTCTGGTGTAGAGATTATAGAAGTAGAATACATTGATTCTGAGAAC TTGAATGATCTAGAAGATGTTGATACTTGTCTCAAGGTATTATGTTATCCATTTTTTGGGTAAAGGGACTAGCGGGGTTT GACAGTTGAGAACTGTTGAAATTGGCCTCGTTTAATATAGTGGGGATTTTATTTTATTTTTAGTTATTTACAGTTGATTA TTGGCTTATAAGGAATTGAAACCCTGTATTATCTGAAAATAATTATTTTGGTTTTGTTACAGACCCTCTTATCTGGACTT GACTCGAAGGATTGGGTCCTGCTTTGTGATTCATTAAATAATGTACGCCGTTTATCTATATTCCACAAGGAAGCAATGCT TGATATGCTGTAAGTTTAATTTTATATATATTATGGTTTTTAAATTCAGATATCATTGATTAGTATGTTTTGATTTTTGT TTTGATTTATTGAATTACTTATTTGTTGTCTGGTAAACAGGGGGGATGTGATCACATCTATTGCAAAGTCCCTGAAAAAT CCTAGAAGTGCTGTTTGCAAAACTGCCCTTATGACCTGCGCTGACATTTTCAGTGTTTATAATGATCTTATAATAGATTC ACTGGATCCTCTTGTAAGTCAACATTACTTATTTGTACTGGTAAATTTGCTGACACGCATTGTGGAATCAAATCATAAAC TTGATAGTATTATTAGTAAATTAATGTGCTCTATGTGGAACAAATATGGTGGATGCAGCTAGTACAGCTTCTTCTCAAGT CTTCCCAGGACAAACGCTTTGTATGTGAGGCAGCGGAAAGAGCCTTGATATCAATGACTACTTGGATTTCTCCTATTACT TTGTTGCCAAAATTGCAACCATGCCTTAAGAACAAGAATCCCCGTATTCGTGCAAAGGCATCAATGTGCTTTTCTCGAAG TGTTCCACGACTGGTACGGGTACACATGATTTTTGCTTATATTGATGACATTTAAGACTTGTTCATATGCATGACTTTGG CCTTAAAGTGATTTTTTGTGTCACAAAAAGATAAAACAATAAAAACGTTAGGAAACAGATTAGTGATGCAAGAAAAGAAC CTTTCTCACCATCGACATTGAAATCTTAAAATGTTGTTGTCTTGATTTAGAATATGATTGTTTTGTGCCAATTCTGTTTC AGTTCCAAATTTATTCAACAAAGCTTCACATCTATGTTTGATTAGGGGAATGGTTTATAATGACCATGCATAGAAATCAT GTTTTTTATTGCTATACTTCCATACATAGCCTCATTTAGTAGATGGATTGTTTTTTCAGTGATAAAGGAGTAGAAGTCTT ATTTGATAGATCGCATGTCCTAAAATTTCTTTGATCATTGGGTACATGTATTATGTTTCTTGGTTAATGCTAATCTGTTT AACCTGCTGGTAGTACTTATCTTATATCTTTCTAGTCTTATGGTGCAATCAGTGAAACTTTTGTAAAACAAGCAACATAT ATATACTCATATTATATCTATTTGTAAATTTCTCTTCCTCTATTTTGTTTAAAATAATTTCAGGCTTGCTTCAGTAGTTA TATTAGTCAGAATACCCATATGAATGGATCCTTATAATGAGGCTGCCATAAATAGCTCAATTGTATTTGTTACTATTTTT TGATCAATTCTTGTTATCATGTTTATAGATCCAGTGCTTCAAAATCTGTTGAAGGGTGGGTTTAGGCCATTTAATAAATG GTTGCTATACTTTTAAGTTGTTTGCATGGATGCCCTCTATAGTTGGAATTTGGAAGGGACACAGTTAAAGTAGATAGGAT AATTAGTATGGCTTAACTTTTGCAATTTGGTTTGGCGATTAAGATTTGCTGCTTTCTGTCCTTGAACTGTATTTGAACAG GGTGCAGAAGGCATAAAGACATACGGGATTGACAAATTGATCCAAGTAGCTGCAGCACAGTTGAGTGACCAGCTCCCTGA GTCCAGGGAAGCGGCTCGAGCTCTCCTCATTGAGCTTCAAAATGTGTATGAGAAATTTCAGGATCTTATGCCAGCTACTG TCTCTGAGCAGCCGGAAACTGTCTCTGAGCAGCCGGAGACTGTCTCTGAGAAGCCGGAGCCAGGATCTTGGGAGAGCTTC TGCCAGTCACAACTTTCTCCTTTAAGTGCTCAAGCTGTACTTCGTGTTACCAGTATCGCTAGGGAAGGTCTTGTTTCATG A
CDS sequence (LotjaGi2g1v0248200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGAGAATGCTCTTAGGGATCTCAATACAATTCCTGGAGCTGAAAGGAAGAATGAGGACTCCAGTAAGGCCTGTTT AACCAAGCCTTCCGCTGACAATGCTGGTGAAAATGCCGAAGAACGACAAAAGAAAAAGAGTTGCGCCTCCTTGGATTCTC CATCTGTTAATGGAAACCAGGATGGGACTGCTAATTCTGGTGTAGAGATTATAGAAGTAGAATACATTGATTCTGAGAAC TTGAATGATCTAGAAGATGTTGATACTTGTCTCAAGACCCTCTTATCTGGACTTGACTCGAAGGATTGGGTCCTGCTTTG TGATTCATTAAATAATGTACGCCGTTTATCTATATTCCACAAGGAAGCAATGCTTGATATGCTGGGGGATGTGATCACAT CTATTGCAAAGTCCCTGAAAAATCCTAGAAGTGCTGTTTGCAAAACTGCCCTTATGACCTGCGCTGACATTTTCAGTGTT TATAATGATCTTATAATAGATTCACTGGATCCTCTTCTAGTACAGCTTCTTCTCAAGTCTTCCCAGGACAAACGCTTTGT ATGTGAGGCAGCGGAAAGAGCCTTGATATCAATGACTACTTGGATTTCTCCTATTACTTTGTTGCCAAAATTGCAACCAT GCCTTAAGAACAAGAATCCCCGTATTCGTGCAAAGGCATCAATGTGCTTTTCTCGAAGTGTTCCACGACTGGGTGCAGAA GGCATAAAGACATACGGGATTGACAAATTGATCCAAGTAGCTGCAGCACAGTTGAGTGACCAGCTCCCTGAGTCCAGGGA AGCGGCTCGAGCTCTCCTCATTGAGCTTCAAAATGTGTATGAGAAATTTCAGGATCTTATGCCAGCTACTGTCTCTGAGC AGCCGGAAACTGTCTCTGAGCAGCCGGAGACTGTCTCTGAGAAGCCGGAGCCAGGATCTTGGGAGAGCTTCTGCCAGTCA CAACTTTCTCCTTTAAGTGCTCAAGCTGTACTTCGTGTTACCAGTATCGCTAGGGAAGGTCTTGTTTCATGA
Protein sequence (LotjaGi2g1v0248200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSENALRDLNTIPGAERKNEDSSKACLTKPSADNAGENAEERQKKKSCASLDSPSVNGNQDGTANSGVEIIEVEYIDSEN LNDLEDVDTCLKTLLSGLDSKDWVLLCDSLNNVRRLSIFHKEAMLDMLGDVITSIAKSLKNPRSAVCKTALMTCADIFSV YNDLIIDSLDPLLVQLLLKSSQDKRFVCEAAERALISMTTWISPITLLPKLQPCLKNKNPRIRAKASMCFSRSVPRLGAE GIKTYGIDKLIQVAAAQLSDQLPESREAARALLIELQNVYEKFQDLMPATVSEQPETVSEQPETVSEKPEPGSWESFCQS QLSPLSAQAVLRVTSIAREGLVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 64 | 64 | - | – | |
| PANTHER | 36 | 334 | 299 | 9.0E-106 | – | |
| PANTHER | 36 | 334 | 299 | 9.0E-106 | – | |
| MobiDBLite | 49 | 64 | 16 | - | – | |
| Gene3D | 69 | 301 | 233 | 1.0E-36 | ||
| SMART | 77 | 311 | 235 | 1.4E-14 | ||
| SUPERFAMILY | 85 | 282 | 198 | 9.46E-17 | ||
| Pfam | 123 | 281 | 159 | 1.2E-8 | ||
| MobiDBLite | 291 | 313 | 23 | - | – | |
| MobiDBLite | 291 | 306 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0248200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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