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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0248300 |
| Transcript ID | LotjaGi2g1v0248300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar ATPase assembly integral membrane protein VMA21 homolog; TAIR: AT1G05780.1 Vacuolar ATPase assembly integral membrane protein VMA21-like domain-containing protein; Swiss-Prot: sp|A6R3V7|VMA21_AJECN Vacuolar ATPase assembly integral membrane protein VMA21; TrEMBL-Plants: tr|V7C152|V7C152_PHAVU Vacuolar ATPase assembly integral membrane protein VMA21 homolog; Found in the gene: LotjaGi2g1v0248300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71400641..71402109) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAGTGATTCAGAAGTTTTTCATTGCATCAATGTTCATGTGGGCAGTCCCTATTGCAATATTACATGCTTTTAACCA TAATCTGCTTCCTGGTAAGATTCTACAGCACTAAGCTCTTTTATATTTTTTTCTTTATTATTTTATTTATGAAGGTAATT TGCTACTTAAAATGGACCTAAAACTGATAAACTTTGTGATGATTAACATGTAGTTAGACCTATCACATAATCCTTACCTG TGGTCTCAAGAAGTAGTTTGTAATTTGTGGTAGTTAATTTTGCACATTGGAGCTCATTTTTTTTATTTTTTAGCATCATG TGATGTGCTTGTTGGAAATGGTTTAGGCATGTGTAAATGGTGATGCTCTCAGTTTTTGTGTGTATTCTCTTTCTAACATA TAGACTGAAGATCATACAAGCAATAACCTATCCACTTTCATGCATCCTCACATGTGGTATTGAGGCAACCAAATATGCCC ACTTACACCCCCATTATAACCAGAAAGTGTTATTAACATTGTCATGAGCCTATATATATATATATATATTGTAGTTCTGA CTTCTGAGTTCTGAGGCAATGTCTGTTGACTTGTATATGCCAGAATTGCCTAACCTTAAATTTGAGGTGCTGAAATATTC ATGGTAATTGTTGCACTATTGAAAATAGTAGTGTATCTATTTTTTTTATTACTGACTTAGGGTGAGTTCGGGTAAACAGT TTAATTAAGCGCTTGTGTCAGTAAACGCTTATTGCATAAGTGCTTATTCATAAACTAATTTGAGAAATTTATTGAAATAA GTTGAACATAAGTTATGAATAAGTATAAGTTGGTATTCATAAGCTAATATGAATAATGAACAGCTTATGAAATAAGCTCA AAGTAGTTTGTACTAGGCTGAATAAGCGCTTATGCTTTAAGATAAGCTCAAATAAGCTCTTCCAAACAGGGCTTTAAGCC AGTACTTCAAAATGCTTCCCGAATAAGCTTAATTCTTTAGGAAAATTATATATTCTTTTAATTTTTATCTATCTGGATTG GCATCTAAATGCTCCCATACTAAGGCTCTTCAACGTGCCAACGATCTATCTTATTTTTGTAGTGCTTCATCCTCTCTGCT CCGTGATAATAGTTCTCATTAATTTTTATCTATTTCATTTAATGCTTCTCAACTTGGAGTAAGGCCTAATAGAATAATGT AATGACAGTTGTAAACTTTACCTTACTGTATTTCCTTGTCTGTAACAGGAACATCCAATCTGTCTCCTTACTCTGTGACA CTAGTGAGCGGATTTCTTGCTGTCATATCTGTTAATGTAGTCATAGCATTTTACATTTATTTGGCAATGAGAGAACCTGC AGACAAACACGAGCCTGATCCAAGGTTTCTCGCCGAGGCCAAAGCTAGTATAAACCAGACTTCAGGAGAGGCTCAGCAAT CTTCCCAGCCTTCCAAGAAAGAACAGTAG
CDS sequence (LotjaGi2g1v0248300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGTGATTCAGAAGTTTTTCATTGCATCAATGTTCATGTGGGCAGTCCCTATTGCAATATTACATGCTTTTAACCA TAATCTGCTTCCTGGAACATCCAATCTGTCTCCTTACTCTGTGACACTAGTGAGCGGATTTCTTGCTGTCATATCTGTTA ATGTAGTCATAGCATTTTACATTTATTTGGCAATGAGAGAACCTGCAGACAAACACGAGCCTGATCCAAGGTTTCTCGCC GAGGCCAAAGCTAGTATAAACCAGACTTCAGGAGAGGCTCAGCAATCTTCCCAGCCTTCCAAGAAAGAACAGTAG
Protein sequence (LotjaGi2g1v0248300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRVIQKFFIASMFMWAVPIAILHAFNHNLLPGTSNLSPYSVTLVSGFLAVISVNVVIAFYIYLAMREPADKHEPDPRFLA EAKASINQTSGEAQQSSQPSKKEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 1 | 86 | 86 | 21.341 | ||
| Phobius | 1 | 6 | 6 | - | – | |
| Pfam | 2 | 65 | 64 | 7.8E-20 | ||
| PANTHER | 2 | 94 | 93 | 4.9E-41 | ||
| PANTHER | 2 | 94 | 93 | 4.9E-41 | – | |
| Phobius | 7 | 25 | 19 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 26 | 36 | 11 | - | – | |
| Phobius | 37 | 63 | 27 | - | – | |
| TMHMM | 41 | 63 | 23 | - | – | |
| Phobius | 64 | 104 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar proton-transporting V-type ATPase complex assembly | The aggregation, arrangement and bonding together of a vacuolar proton-transporting V-type ATPase complex, proton-transporting two-sector ATPase complex that couples ATP hydrolysis to the transport of protons across the vacuolar membrane. |
Expression pattern of LotjaGi2g1v0248300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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