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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0248400 |
| Transcript ID | LotjaGi2g1v0248400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DAG protein, chloroplastic; TAIR: AT3G15000.1 cobalt ion binding protein; Swiss-Prot: sp|Q9LKA5|MORF8_ARATH Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I1LV52|I1LV52_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0248400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:71406013..71410630) extracted from Lotus japonicus Gifu genome v1.2.
CTCCAAAGGAGCTCAATGCCAAACTTAAGAGCGAACCTCTCCACACACACGATCACCCCCACTTACCTATCTTAAATTGT TCAATAATTAAAATATGCATTATTTTTCTTAGTTTTAATTTTCATAAATCATCAAAATTTGAGGGGTTTTTCCTATATAA ATTCCCCCAAACCCTAAACCACAACCATTTCCACTACTCCTCCCCTCAATGGCGACCAAGATCATCTCTCGTCTCCACCC CAAAACCCTAACTCCCTTCTTCTCCCGCTCCCTCTCCACCACCTGTCCCTCTCTCCGCCGCCTCCGCCCCCTCGCCGCCG CCTCCATCCCCACCCGCCACCTCTTCCTCCCCTCCATCCGCTCCCTCTCCACCCGCGCCACCACCTCCTCCCACAACGAC CCCAACCCCAACACCTCCAACCGTCCCACCAAAGAAGCCATCGCGCTCGATGGCTGCGACATGGAGCACTGGCTCATCAT GATGGAGAAGCCCGAAGGCGAACCCAGCAGAGAAGAAATCATCGATGGCTACATCAAAACACTGGCTCAAGTCCTCGGAA GCGAAGAAGAAGCGAGAATGAAGATCTATTCAGTTTCTACCAAACACTACTTTGCATTTGGGGCACTTGTTTCTGAAGAA CTTTCCTTCAAGATCAAAGAATTGCCCAAAGTTACATGGGTGCTTCCTGATTCGTATTTGAATGTTAGGGAGAAAGATTA TGGAGGTGAACCATTTATCAATGGACAAGCTGTGCCTTATGATCCTAAGTATCATGAAGAATGGGTTAGGAACAATGCTC AAGCAAATAATAGGAACAACCGCAATGCCAGGCCTCGGAGGGACAATGCAGGTGGTCCAGGAAACAATGGAGGTGGATAC CGGCCTAACAACAATGCCAGCGGTTACCCTCCTCGTGACGGTGGTCATGGCCGTGGTGGAAGGCCTCAGAATAACTATGC TGGCAACAGGGGAGGTGTGCCACCAAACCAGAATGCAGGGTGGTCAAACAATGGACCTGCTAGAGACGCGCCGAGCAGGG ATAGGGGAGTAGCAGTTGGTGGTGGTAACACATATAATGGTTGAGGTATGATCAGCTGAGATGGTAGTGTGGCCAATGTA GATAATAAAGAATTATGTCAGGGACATCCTAGAGTTTATTGATCTTATGAAATTAGTATTTTTTTAATCTTGTTAGTTAC TACTTTCCTAATGAACCTGATGTTAGGTATCTGAAGTTCACAAATATTCTAAGGTTAGAGACCACTTTGGTTGTCAAAAT ATTTATGCATTTATTGTTCTATTAAATTATTTTGGTACAGTTAATGTTAATAGTTAATACTACAACTATGTTAAAAAAAA TTAATCTCTAGATGAAATATTATAATAACTTTATGGTGAACCAACTTTTGGTCCTCCTGATGCTTTTGAGGCCTTAGCAA GTCTATATATAGGTGAAAAGCCATGGCCCTTGGGGAGTTTTACGTTTCTCAGGGTTTGTGGCAATGATGGCAGCCATTGG GGCATTGATCATGGAAGCTTTGGCTATGGGGTACCATTTTGAAATGAGGAAAGCTCAGCCATTGAATTATGAGGATAAAG AGACTCATGATGCACCTCATGGTAGTCTTGTTCATAGTAGTCATGTTCATAGCTCTGCACTTGCCATAGTTTTTCAGGCA ACTAACTAATTTGGTTTTTGTTTCATCCCAGATGATAATAATAGAATATGTGCATGTGTGAAATTTTTTTCTACAATAGT ACAATTGATTCGAAATTCTGGCAAGAAACTTTAGGAGTGCTGTGCCTGAATTGGTTATGTGAAAAAAAGGAGAAGCTAAT TCAAACATGTTATAAAAGCTTCCTACTTAGTTTATCCCCGCCAAAATCGAAAAAGTGAAGTCTGAAAAGCTTGAAATAGA TCATGACTTTACTTTCAAGTCTTGTGCTAAAATATTTGGATCAGCTTCAGTGCAAACAGACTGTAGCATACATATTCGTT CACCTGGTATCCAAACATATAGGCGTAGATTTTAGCAATCACTCTTACAGAATGAACCTTAGATAACAGTAGTACAGAAG TTTTTATTGTATCACATAATCTGGATTAAAAAATCCATGGTATAACATGTATAAAATATTAGCATTGTACTTGAAACTTG TAAATATTTTCCAAAACTCTGATTATGAAAACTTATCCCAAAATTCACTATTTCATGAATCCTTAGAAATTTTGTCTGCT GGAGTTTCTGTAGTATACACCTTCCTCTCTTTTGAAATTAATAAGGCCTCCTCCAGTTTTATCACAACCAGCTCCATGGA TGGTCTTTGTTGGTTGAGTGCTGTGCATGCAAGAGCAAGCTGAAGTGTAAAATCAAATGCTTCCTCTGAGTATTCTCCTT TAAGTTTAGGATCAGCAAATTCTGTAATGCTACCATTCTTGGTGAGCAGTTTTGCCTAAGAAATTAAAACATTTGCACAA CGGGTCAAAGACATTTCGAAAAACAATAATTAAAAATGCATGAAATAGAGTAAGAAGGTTGTGGTTTCTGACCATTTTAC TTAGTGGCATTGGTTTTTTCAGTTTCAAATTTATGACCTTCTTTCCAGAGAGGATTTGTAGAAGTACCATGCCAAAGCTG TAAACATCACCAGATGAATTCACATGGCGGTTGCTTTGGTACTCAGGATCCACATATCCAAAAGTTCCCCTCACTTCTGA ACTAACATATGTTTCTCCCGCTTCAATAACTTTAGACAGTCCAAAATCTGATAGTTTTGCCTCAAATTTAGGCCCAAGAA GAATATTTGTTGGCTGCACAAGAAATATACACCATTCTATTTAACCAAGTATTGTGTGAACTTTAGAAAGGTAGCATTTG AGTCACAATTGTAATCTTCAGCATGTCATGTTTAAGAGGAAAATTACACTTTAGAATGTGTGAGATGTTCATAAAGATTG ACCTTGATATCCCGGTGAACGATGCAGCCTCCGGGATATGCATGTAAAAACCAAAGACCTCGAGCACTATCAATTGCAAT TTCTAGTCTTTGTATCCAGGACAACACCTTGTTCTTGCCTGATATATGATTCACTTGTCAAATCTTCAACCAAAGATATA AGAACGAATAAACTTCAAGCTCATGCTACAAAAAGGGATAAACTACAATTACCAAATAGCCACTCTGAAAGACTCCCATT GGGACATAGCTCATAGACAAGAAAGCATTCATCTGCCTCATTACAGAAACCCAACAAAGCAACAAGATTTGGGTGCCTGA CATGAGACAGGCTTGTAACTTCTCTGACAAAAGTTTCTATATTTCCATCATCATTGATTATGTGCTTTACTGCAACATCT TGTTTATTTGTCAATATGCCTTTGTAGACCTTACCTAAAATTCAAATCCAGAAAGAAGTGTTTTATAAGTAGATTTAATC AAGCTTGGACAATTTAAAGAAAGTTGATATCTTCAATTGGTTTGGTAAAGAGCGAAGATTTTAACTCTAGAACACTCATC TAGGGCCTGTTGCCTAAACTGTTGAAAACCATAGAAAATCTGAATGTTTATATACATAATGTATAATTGATGATATTTTA CAGAGCCATTCATTAATAGGTTAAAGTTTAAACCAAATTTTCTCACCAAGCTTTCAGTAATTTACCTGCAGTTCCCTCTC CAATGATATTCATTTCATTAAGATGGTTAGTGGCAGAGTACACTTCCCTGATAGAAACTCTTGGACAAGCTGTTTTCTTT AACATGTTTCCAAATGTTACTGTGAAAAATAGTACATAAGCATATTAAGCTATTAGCCTTTATCAACAATGCTGTCTAAT ATGAGTTTGATATAATTTAGGTCTTACTTTCGTTTGTTGGTGGGGCTGATCTGAAGCATCTAATATAATACATGATGCAT GCAATGATAACTGTAATGAGAATAACCCCTATAATTGCTCCTGTCAAAGTCCACATACCTAATTCCATATAAAAGCATTG ATGGTCGTCATGAAGAGAATAATACAACAGTCTGCATAATTGGATATTATATATTTAAGCACCTGTATCAGCAACACTGT CACTTGCTTTCTTTGGTTTGATTCTCTGCTAGAAAAAAAGAGAAAGTCATATAATTGGGAACACAGTTCTGTTCCAATCC CAATGAAACTAACGTTTTAAGGGGTATTCACCAAATGCAACTATAGACAACATGTGACATGTAGCTTGTTGTGTTCATGA GGAACAATGAAGTGTAAACATTTGTTTGTTAGTGGAACTGGTTGAACGTTCCTTCTTTCCCCATTGTGCAGGTTTGTGTG CAACTGAGAAAGAAAGGGGAGTCTAAGGTGTGGGGCTAGTTTATGCAACTACTACTTGGAATATCTTGTAGATTTTCTCA AGAGTTATTTTCTTTGCTATTAGATATTTGAACATTCATATGTCAAACATTTAAGAGATTTGGGTGTATCGTCCAGATGG AAACACAAACAAATCAACTGACTTCACCCTTTTGCTTCTTGTGCCCAATTAGTCTTATGGCCGGCTAATGCAAGTTACAG TCATTTTACTTCAGAAAATATTATTGTTTCTCACTGTCTTGAGATTAATCAATTTTTT
CDS sequence (LotjaGi2g1v0248400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACCAAGATCATCTCTCGTCTCCACCCCAAAACCCTAACTCCCTTCTTCTCCCGCTCCCTCTCCACCACCTGTCC CTCTCTCCGCCGCCTCCGCCCCCTCGCCGCCGCCTCCATCCCCACCCGCCACCTCTTCCTCCCCTCCATCCGCTCCCTCT CCACCCGCGCCACCACCTCCTCCCACAACGACCCCAACCCCAACACCTCCAACCGTCCCACCAAAGAAGCCATCGCGCTC GATGGCTGCGACATGGAGCACTGGCTCATCATGATGGAGAAGCCCGAAGGCGAACCCAGCAGAGAAGAAATCATCGATGG CTACATCAAAACACTGGCTCAAGTCCTCGGAAGCGAAGAAGAAGCGAGAATGAAGATCTATTCAGTTTCTACCAAACACT ACTTTGCATTTGGGGCACTTGTTTCTGAAGAACTTTCCTTCAAGATCAAAGAATTGCCCAAAGTTACATGGGTGCTTCCT GATTCGTATTTGAATGTTAGGGAGAAAGATTATGGAGGTGAACCATTTATCAATGGACAAGCTGTGCCTTATGATCCTAA GTATCATGAAGAATGGGTTAGGAACAATGCTCAAGCAAATAATAGGAACAACCGCAATGCCAGGCCTCGGAGGGACAATG CAGGTGGTCCAGGAAACAATGGAGGTGGATACCGGCCTAACAACAATGCCAGCGGTTACCCTCCTCGTGACGGTGGTCAT GGCCGTGGTGGAAGGCCTCAGAATAACTATGCTGGCAACAGGGGAGGTGTGCCACCAAACCAGAATGCAGGGTGGTCAAA CAATGGACCTGCTAGAGACGCGCCGAGCAGGGATAGGGGAGTAGCAGTTGGTGGTGGTAACACATATAATGGTTGA
Protein sequence (LotjaGi2g1v0248400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATKIISRLHPKTLTPFFSRSLSTTCPSLRRLRPLAAASIPTRHLFLPSIRSLSTRATTSSHNDPNPNTSNRPTKEAIAL DGCDMEHWLIMMEKPEGEPSREEIIDGYIKTLAQVLGSEEEARMKIYSVSTKHYFAFGALVSEELSFKIKELPKVTWVLP DSYLNVREKDYGGEPFINGQAVPYDPKYHEEWVRNNAQANNRNNRNARPRRDNAGGPGNNGGGYRPNNNASGYPPRDGGH GRGGRPQNNYAGNRGGVPPNQNAGWSNNGPARDAPSRDRGVAVGGGNTYNG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 212 | 192 | 3.3E-109 | – | |
| PANTHER | 21 | 212 | 192 | 3.3E-109 | ||
| MobiDBLite | 56 | 75 | 20 | - | – | |
| MobiDBLite | 198 | 291 | 94 | - | – | |
| MobiDBLite | 253 | 269 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cytidine to uridine editing | The conversion of a cytosine residue to uridine in an RNA molecule by deamination. |
Expression pattern of LotjaGi2g1v0248400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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