Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi2g1v0250000
Transcript ID	LotjaGi2g1v0250000.1
Lotus japonicus genome version	Gifu v1.2
Description	Protein translocase subunit SecE; TAIR: AT4G38490.1 transmembrane protein; Swiss-Prot: sp\|Q0SNR0\|SYL_BORAP Leucine--tRNA ligase; TrEMBL-Plants: tr\|I3T6Z9\|I3T6Z9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0250000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:71567376..71572789) extracted from Lotus japonicus Gifu genome v1.2.

ATAGTCCCTGCCTTTTTTTATCCTAACCATGAACCAACCTGACAATTTGACCAAACAAAAAAAAACCAGTCTAACGATAA ACCACTTCAGTGTTCTGGGTTTTTAGCAAACTTTGAGGTTCTTCTCTCTCTCTGCGCAGCCAAATTATCCATTTCCCTAC TGAGAGACTCAACCAAATCGCTCGTTATCATTCTCACTGGTAAGATTTCATTCTCCTATTCAATATCGAGCTTAATCTCT TTATCTGCCACTTTCAGTTTCCTAATTGTTCTGGGTAGTTGTGGATTCTATGGCTACACAAGCCATTTATATGATTTAAA AAAAAAAATCAGTTAGACACCCTTTTTCTCAGAAATTTTAATTCAAATTATTTACTGATACCTGAAAGAAGAACTGGATT AATTAACTGTAGAAAGTGGAAACTTGACATTTGCACACAATGGTTGTTGAACAATGCAGCTAATATAGTGATAGAATCCA AATGATCCCCTCAGAATTAGGGGATAAACTTGTCCATTCATGTGATTGTACTAAATGTAGTATGGAGTCAAGGGCATTGT ATTCCTATTTAGTGTATCGAAAATTCAGCTTTGGTAGCATTGATTGACATTTATGGAGTTCATTGTAAAGTTAATAGTGG TTAGCATTCCTCTCATGCTCAGCTAAGCTTCTAGTAATGCCAATTTTCAATTAATTTCGAGTCAGGAATTCCAAATATGT CATAAAGTGTAGCACTAAATACAGTACTAAGTAACCAATGTTATAAACTCAGACCGGCTGCAAACTTGGTTAAGGTATTG AGTTATTGGCTCACTTGTAGAACTAGTATACATAAAAACCTACAAAATTTTATGCTAGCATTTCAATTTCCAGCATTTTC AGGCACTTGAATCTGTGCAGTTCTGTTTCTAGACTTGGCAGGATTTTCCTCGTCCAATGCAGTTTTTGTTAAAGCTTAAG GTTCGTCTTGGTTTCTGTGTAGTGTGTAATGAACTCTTATCACTTTCCTGGATAAATTGAAGTCTTGATAAGTTTAATGT GTAAGGCACTTTGACTGATGAGAATCAATTTCATGAGCTATCAATATTTTCAACACATCAAAGCTTTCTTTATTTTCTCT CTTTCTGATCTGGTTGATTTTTGCTTACTTTTTATTTTTTATTTTGTACCCAATGGCTGCTTTTCTGTCAACTGTTAATA CTCTTGGTTATAACCAAGAAACATAAGGAGAAAAGGTTTTTTATTTTGAGACAAATTGATCATGCATGAATATTCAATAA CCAAATCAGGTTATGCAGGTTTCCAGCATTGAATTGGGTATGATTGGTTAGCGAACATTTAAGTCTCTAATGGAGATCCT TTCTCAGTCGCCAGTGAACTATACAGGTTTTCTTCTAACTATGTTGGTTTCGACCTATGACTGCTTATTTTGCTTCCTGT TTCATTTCATTGACTTGATATATTGCAGGTTTTCTTCATCAAGGTACTCCCTTTCTGCCATCGAAGTTTCCAGTGAGAGT TGATTATTACAGAGATGTTTCTCGAACACCACAAATGGTAATTATTTCCTATCTCCTCTCTATTTTTACCTTCATGCCTC CTTCTTTATATGAGTCTGTACATGTGTTTCTAGTGGTAATATATCATTTGAGATTGCTTGCTGTGTTGCCAGATTTGTAG AAGGAAGATAAAACAAGAACGTGCAAACCATATTTGCTCCAAATTTGTGACGTCAGCCGCAAGAAATGGTCGCCATCTAT GCTATGATGATTTGCCTCAAAAGCCTTTTTTGCTAACATTGATCAAGGATGCCTTCTGGTATTTTGAAACTTCAATTTTT CGTTAAAGTGCAGTAGTATAACAATTTTGTGTTCTTTGTCATGTACAGATGCTATTTTTATAGTGATTAAAGACTTAAGT TTTTCTATTTAATTTTGGAGAAAAATATGATCATATTGACTAATAAGTAATAACTATCTATTCTTTTCCAGGGGGCTAAA ATCTTTATTTGAATTTCTGATTGAGCAACCTAGCCAGCTGAAGTATGTAGAGTGGCCAAGCTTTAGTAATACAGTATGTC TCTTTTGTTTATTATTTATAGCTACACACCATAGTGGTTCTGTTATAATGTTTTGTTTTTTGGTATAGAGAAAGGAAAAG GGAGAGAATAGAAACTGAATTGATATTTACTTGAGATGATATGATGTGTTGGAAAATATATCAAAAGATAAAAGACTAAT CCTTATCTATACCAATAAAGGACTCTTAATCCTAATTACACATGAAAACAAATCATGAAATATAAGGAAATATGAAACTA ATCCTCAGATAATGTGAAGTACTACACTGAAAGATATTTTTCATATAATTAACAGGTACCAATTATATTCATAATGTCTT TTATTGTTTAAATCTATTGAATGCTTTATATCTTTATGAATCCTTTGCAGCTGAGGACTGCGACTCTGACTCTTGTTATT GTTGCACTGCTTATCGTTGCATTATCATCAGTTGATTCGGCTCTCTACTACCTTTTGGCTTTAGCTCTTCGGAAAAGCCC ATAACTCTGCCGGGATGCCTGTGTTACCAGTACCTTGTAAGCAGTTGAGTCTGATACTTGTAATCTGTTTAGGTCTATCC TTGTAAACATGTAAATCTCGACTCCTGTTCAATTAGAACGGACTAGTATATCTAGTACATTCAAGAACCTTTAATTAAAG CCGTTTGCAACGCAGTGAAGGCGTTGTTTGCATTGCATAGAATCTTGTTGCTGACATAATGCCATGGATGGAAAGATGGA ACCTGGATTGGAATTGTATGTTTAACAACAGGGACTGGAGTGGATACAATTATGGATGCTCTAAAATTTTGCAAATATAT TGTAATCTTGGGGTGTAGAAAAATTATAAATGGATTATTTATATACATGTAAAGGAGGGAATGACTAAATATCATTGAGT TGGGAATGGTATTTTCATTCAGTTGCGTTTGTAGCTCTGGCTAAAGTTTGAGTTTTGTGACTAAGGATTGTTATGATTAT GAGGCTCATATCCACTAGGATTGTCAATACAATTAAATTTTGATCAGAACATTGACTGTTAGAATTGATAATAAACTTCT GAAAGATTAAGCTGTTTGTCTTTGTTTTGAAATCCTTTTATTCATTTAACCAACCCACTTAGTGGTAAAATCAGTTTTTT TGTTGTACTCGAATAAATTGCAAAAGGTTAACATGTTTGTCCTAGCTTTCAAAAATAGTAAGAAGCCGTCATCAGTAACA ATAGGTAGCTTTATGGTGAACCTTCAGATTTTCATATTTTTGCAGACCACAAGGATCTCAGTATTCAGATCTCTATGCTT CTATCAATTATCAGTACCTGAAAAAAATGTGTATTATCTCAGCAGTAACTATAAGATATTGAGATAAAACATTGGCTTTA TTATAGTGCAATAACTTCGAATTTTAGTATCATTTTGGATGATCTGAAGCATGGAATCAAACTTCCAGGATTTTGATTTA TGATGCATTCTGTCTGCAGAGAATCCTTACCCTTCTTGTATAGTCTTATCATGTTCACAGTTATGAAAATAATTCAAAGT TTCATCCGATATAGAAGTGCATCTTCGTCTAAAGTTTCCTAGATTCTATAGCTGTTCCACTACTGACATGGTAAATGTGC CAGAGGTTCAAAGCTTGAAACAGAAGTTCTGAACCTGCTACAACAGAGAATATAGTACAACTGCAGTTGCATACGCAATG ACCACATGTTCCACAATTTTTACTCTATATCAATAAGGGAACCGGGAATTGGCTTTAATGTCACCATTTTTTTTTATTTC TTTTTCATTTTCTCGTCACCCAAATTTACCCCATTTATATTTGCGGGAACCAATTACACACCACACTTATAAGTATGGAA TACAAATTATACATTCTATGGGAATTGAAAGTGTTGTAACATTAAAACCAATTCCCTATCAGAAATGTGTTAAAGGAGAT ATAAGTATGGCCTTTCTTTTTTTTTAATCAATCAATATTAATATTAGTAGTGCACTTGTTTTTATGGGGATCAGTAGAAT AACTAAATTTGAGCAATCCTCTTGTGAAACTTGTTACACATTGGAAGCTTTATTATTTCAGCTCAACAAAGAACAACGAA GGAGATCAGAGACTTTTTCAGACCGAGAATATCCACGTTCTGGTAGGCTAGCTCTCTCAATAGAAATTATTTTATACACA TAATTCGAAGCTGAAACATTGCTTATGGGGAATAAGTCAATCATGTACTACTGTTTGAGCAGGTGCCCTCACATACCAAA CAGAAACTGCATGTAGATTATTGTCTCCCAGACTCCCACTGTATAATAGCTGCAATTCTTGCTTAGATACACTATTCTTA CAATAACTTTCCATCAATTTCAGCTCTACTATGATGCCTGAGTAGTGGGAATTAACACCATCTTGCATTGTGCTTCCTTG TTGAAGCTCAGTGTAATCACATCTAGATGGTTATACAGCTACTAATTAAGATGTAACCATGTTACTACATCAGCTGGAAA AGTGCCCTGAGCTTAAGCAAGAATAAAAAATCTGGTGAATATTAGATATTCAGGAACTTGCATAACTTAATGCTGAAAAG ATAAAACTGCTTCACTAGCATGAATAAAAGGAGAGGCAAAGGCAATCATGGTCATTGCTAAGCTCAAGAAACAAATACTA AGCTGAAACATGAAATTCATTCAGTGATTAATTCATAAATAGCCAAACTGAAATCATCAAATTCAAATTCAAAACCATAA ACACAAAATAGTAGAAACAGTGGTGCTGCATATAATACTGATTGGCTACTGACTCTAAAGCTCATTGCCATGTTCCTTCA AATGCACCAGAATATCATGGACAGAGTCAATCAAATTGTGATATAGATGGTTAGATGGAGAGTTTTTGAAATACAAGTAG AAAAAAAAAGTAATGTCTGCATTGAATAAAACTTTGTTGACTCTTTCTTCAAATTGAAGTAGGACTTTGGGGAAAGAGAG AAAATGTAACCTCAACAACAACAATATGACCTCAACAACAACAATATGAAGACTTAGGAGGCACATCACAGCACAACCAA ACAAACTTGAAGTAAGAAGCCTCTGGCATCCGCATCACCTATTCAATTCAGCAATTAGAATTTCCAGAGAACCTAAATTC ATTCTCTCAAAGACTCAAACAGCCAAACCTGTCCAACTAAAACCTTTAGTGTTAAAGACTCTCTTGAAAGGTGTTCCACC CAAAGCAAAGTTGCTCACTGCTTCTTTATTCATCATATAAAGAATTATAGTGGCACACATGTGTTTATCTTGTCACCACT ATCAAGTTTCTTGGCAAAGTGGGCATTATTATTATGGTTATGGTCTCAATCAAT

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0250000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGATCCTTTCTCAGTCGCCAGTGAACTATACAGGTTTTCTTCATCAAGGTACTCCCTTTCTGCCATCGAAGTTTCC AGTGAGAGTTGATTATTACAGAGATGTTTCTCGAACACCACAAATGATTTGTAGAAGGAAGATAAAACAAGAACGTGCAA ACCATATTTGCTCCAAATTTGTGACGTCAGCCGCAAGAAATGGTCGCCATCTATGCTATGATGATTTGCCTCAAAAGCCT TTTTTGCTAACATTGATCAAGGATGCCTTCTGGGGGCTAAAATCTTTATTTGAATTTCTGATTGAGCAACCTAGCCAGCT GAAGTATGTAGAGTGGCCAAGCTTTAGTAATACACTGAGGACTGCGACTCTGACTCTTGTTATTGTTGCACTGCTTATCG TTGCATTATCATCAGTTGATTCGGCTCTCTACTACCTTTTGGCTTTAGCTCTTCGGAAAAGCCCATAA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0250000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEILSQSPVNYTGFLHQGTPFLPSKFPVRVDYYRDVSRTPQMICRRKIKQERANHICSKFVTSAARNGRHLCYDDLPQKP FLLTLIKDAFWGLKSLFEFLIEQPSQLKYVEWPSFSNTLRTATLTLVIVALLIVALSSVDSALYYLLALALRKSP

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	123	123	-	–
PANTHER	PTHR37247 View details on PTHR37247 Search for proteins/transripts with this domain View external data on PTHR37247	2	154	153	2.8E-51	–
Hamap	MF_00422 View details on MF_00422 Search for proteins/transripts with this domain View external data on MF_00422	94	149	56	9.969	IPR001901 Show description in modal box View details on IPR001901 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00584 View details on PF00584 Search for proteins/transripts with this domain View external data on PF00584	98	149	52	1.7E-7	IPR001901 Show description in modal box View details on IPR001901 Search for proteins/transripts with this domain View on EBI InterPro Service
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	124	147	24	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	126	148	23	-	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	148	155	8	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006605 View details of GO:0006605 AmiGO InterPro QuickGO	Biological process	Protein targeting	The process of targeting specific proteins to particular regions of the cell, typically membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.	Subterm of View details of GO:0006886
GO:0006886 View details of GO:0006886 AmiGO InterPro QuickGO	Biological process	Intracellular protein transport	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.	Subterm of View details of GO:0015031 View details of GO:0046907 Part of View details of GO:0034613
GO:0016020 View details of GO:0016020 AmiGO InterPro QuickGO	Cellular component	Membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.	Subterm of View details of GO:0005575

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0250000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi2g1v0250000.1