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LotjaGi2g1v0251300.1

Overview

Field Value
Gene ID LotjaGi2g1v0251300
Transcript ID LotjaGi2g1v0251300.1
Lotus japonicus genome version Gifu v1.2
Description Ferredoxin-thioredoxin reductase catalytic chain; TAIR: AT2G04700.1 ferredoxin thioredoxin reductase catalytic beta chain family protein; Swiss-Prot: sp|O49856|FTRC_SOYBN Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic; TrEMBL-Plants: tr|I3S4G0|I3S4G0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0251300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:71685154..71690991) extracted from Lotus japonicus Gifu genome v1.2.

GAAAGAGAGAGATAGGAAGAAAAGAAAAAGTAAGAGTGAGAAAGTATAAGATGTGATAAATGATAAGAGGAGAGAGATAG AAATAAAAAGATGTGAAAATGAAGTGTATAAAAAAAGGGGTGTGTATCCATAATCTATCAATATGAAGAATTCTATTATT CTAAATTCTAATAATGATAATCCCAATTTTTATTACCATTTTCTCTTCACACAAAAATTAACAAAAACATATATAAAACG CAGAGCACATAAAAACCATTTCCCTTCTTTGCAGAAGAAAATCACCGGCCATGACCTCCCAAGCTTGCTCCTTCGCCGTC ACCGTTCCCTCCGTTGCCTCCCCTCTCCGGCGCCACCGCAATCTCCACGTTGTCCGAGCTCAAGGTAAGCTTCATTTTCC AATGCTCTGATGAGGTTTATTGTACTCCTTTTTTCTTGTTTCCTTACCGATTCTGATTTGATTTTCGATGACCCAATTGG GTTTTATTGTATATTTTGAATCAATGCTTTAAGTATTAAGTGTTGCTCGTGGTTCTCTATTGTGTGTTGTAGTTATAGTT TCATCAATGTGTTATCCTGAAGCTGTTTGTGGAAATGTCTCTGACTCAATTCTGATATTGAGTTTTTGTTTCTTCTTCTA TTCCGCAATTAACTTTGCAAGTTGTGAATTGGGTTTTAATTTCAAGCTCCGGGTTTTCCAAATTTGAAAGCTTTTTAGAT TTTGACTGGATAGGTTGTCAGCTGCACAAGCAGTGTGTGTGTGTGTTTAAAAAAAGAAGAATTTTTGGAAACTATGGCTC CTCATTTTTGTCAGTTTTATGTAGCCTAATTCTGTGATGGTTGTGCTTTCAATTTTGGTAAGTTGTTAATGTTGCCTTTT TATGGTAATAATTTGCTGGTTCTTTCAGTGGAACCATCAGAAAAATCTATTGAAATTATGAGGAAGTTCTCAGAGCAATA TGCCCGTAAATCAGGAACATACTTTTGTGTGGACAAGAGTGTTACTTCTGTTGTTATCAAGGTACATGCTCTATCTTCAG CTCATAACTTCTCCTATTAATATGAATTTTAATTTTGATTGATGTTTTCCCTATTTGTTGGAGTAGAGGGCATTGTCAAA TAAAAATCTCAAAATTCCATACCCTGTAGTTGATGATATGAATCCTGGGCTAGTAAGTCCTGCCCTGTCATTGAGTTCTG TAAGAATTGAGAGTCATGGGAAATCTGTTGTTCGGTTGTTGCATTAGAACGATAAAAAGGGCATATCTCTACATGAATTT AAGCTTTCCTTGTGGAATCTATACTTGTCTTAGTAGTTTACCAGTGCAGTGTAGATCTATACTAGGAGCCACCTGCATTA CTTGCACAAAATTGACTTTTCAGCTCATTTATAGTGCTCCAAATTGTGTGGAACATTTTCCTGCTATTGTTCTTTTTCCA AAATTTCTCTACGTTACATTCTTAAGCAATTCATTTCTTCACGTTACTATGAAATTCTTATCAAATGGCTATAAATTTTA ACTCTGCCTGCCACCTACTCAATTCGAAAGCTGGGAACTTCTGTGGGGGACCCTAGTCTTAGGTTGTTTTAGAAGCCAGA GATTGGTCATAATTAGGATCCATGATTAATTCCAAAGTCCCAACTTCCCATCACCTTCCCTTCAAGTTCAAAACATTTTG GGATGTAGAGGTGTAGCTTGTATTTTTTAAGCCAGGGACTAGTTACAAATATTAGGTTTTTCTTCTGTATATCTTTCTAG CAGGGTTTTCGGAATCTTAAGGGTATCAACTATCAAGGATTGAAATGATGGTTGCACCTAATTTAGACTTCTGAATGGTG AACACTAAGCTATGAGCTTAGTAAATCTTGTTTTTTTTGGATGAAAGGATTTATACAGAGAAAGAAGAAAGTTAGATTAA AGGAGAGAAATTAGTTGATGTTATAGCTAAGTCTTAAGCCTTTTAGGGTGGCTATTCAGTTTCTGTTAAAGTGTTAAGCA ATGTTACCTTCTCTGATGTCTTCAAGCTGCATTTGCCTTCTATATCTTTTCTTAGAATTTGGTTCACTGATTTGTTTCAG AAACTATGATAATATCTGATGCCCATGGTGCATATAGTACTGTTAAAAAGAGTTAGGATACAATTAGTACAGCTGTTATA GTAGTTTGACAGCTGGCATTGAGATAGTATATACTCCCATAGAGTTAATTGCAGGGGATTATGAATGAACTGTTACTGAT TATCTCTCTAGTTCTATCTCAGTTTCTCTCTTTTCTCCCTTTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCCCTAACA ATATCATAACACCTTACCTTACTAAATTAATGATGATGATGATAAGTAAACACTATATTTGCAACTTGATATTAATACCA AAAGCACATTTAGGAAGATTTTACCGAACACCAAGTGTTATTTGAATCATCAAGATTGGCATGAAATTATACAAAGTGTC AAAGTCTGAAAATAAGTTCCCCAGATTGTCATATGATGGGCAATATTATATTCCAGTAATAACAACAACAAAAACAAGAG CTTTTTCCACTAGCTGGGTTCAAACAATGTCATAATGTCTTATTATGATGTCTAAAGACAGACGATATTCTTATAGTAAG TAGTAACACAAAATTCAATTAATGAAATGGTAGATGAAAATAAATCTACATATGTCCACATGTGCATATATTGTAAGCAG TTATTTTCTTCAGTAATGAATGTTTCTTCCATATATTATTTCTTTTTGAACAGGGGTTGGCTGACCATAAAGATTCATTG GGTGCACCACTGTGTCCTTGCCGGTAAATGCCTGTTCTTTTACCTTGTTATCAAGCATAAGTTTTTGCTTAATACTATAG TTCTGGTAGTGCTTTTGCATAGTTTGATCAGTGCTGATGTCTTCTAACCTTTTTTTACCCACAATCATTGTCTTTTAGGC ATTATGATGATAAACCTGCTGAGGCGCAACAGGGATTTTGGAATTGCCCATGTGTTCCAATGAGAGAGAGGTAGACATAT CTTTTAGTTGTTACATGTGTGCCTTCTATAATAACAAGTTATCAAAAGTTTGAAGCTACTTCATTTGCGAGGATCAAGTT TTATTACAAGAATATGACTAAATCAGGCATTGATAGTGTTCAGAAAACAAATTATATATAATTTTTTATAGATGCTATGT ATCATTTGTGGTTATGAAACAAGAGGCTAGAGTCTTGTCTTTACGCTTGAAGAGAAGTAAACATAATGGCAACCAATAAG CGTCTATGTTCTTGGTGTTTGTCTTGATGACTCTTTCCTCTATGAAAATTGTGTTTAACAGATTTATGGTCATCATCTCA TTTACCTTGTTAATACATATTTGTTCAAGTCTTCAAGAGGTAGATCATAATAAACTCGGCCAAAAACTGTTGTGGAGACA TTCTAGTTATCAGGTTTCAAAGCTGACTGATTTTCGTAGTTTATATATTTGTTCAGAGGCACAGGCAGTATAGTAGCTTT AGTTGTTTTGACTTTTGTTCAGTAATACTATAGTGTTCTGATATTCATTGGCGTATAGTTATCAATGAAGGCCTTTATTT TGTGTTTTTGATGTTTGACAAGAAATTTGTTTTAAGAATTTATTCAATGAAACATGAGCCACAAATCCCCCCACCCCTAG GTATTGTATTTTGACATCTTGATTTTGTTTGGCAGGAAGGAGTGCCACTGCATGCTCTTTCTCACTCCTGAGAACGATTT TGCCGGCAAGGAACAGGTAATGTTTGAATTCACTTTTGTTGAAAATTTGATTTTTGCCGTGTTGGTTTTGTGCTCCATGA CATAGGTAATGTAAATGTATTTTACTTGACTTAAATGCAATTTTTTTCATTCCTTGCAGGCTATCACCTTGGATGAAATT AGAGAAACAACAGCAAATATGTAAAACAGATTATTATGTATTAAGTTACTTATTAGTTGTTACAGCCTGTATGTTTTGAA AGACAATGGGAAAGAAAGGTGCAATGATATGTAGGTAAGTTGCTTGTTGTATTCACCATAAATCACATGTAATTTTTCAC TTGGGCTCTTTCTAGATATAGCCTAACTTACACTGTATTACAAATCTCATTCATTTCATCACTTCATTTTCAAATCTTTA GAACACACTGATAAGGAAAACTAAACCAGAACCCCCATAAGTTTCAAATTTTAATCAGGTGTGACCGTGTGAAGAGCGAC ACAACTGAAACCAGAAAACAAAAGATGTAGTACATTGTATTTCAGGGATTGTATCTATGAACAAAGATATAATCTATTGA TGCGTTTACTTTGTATGGGAATGGGAACATTGACAGCTACTCCAAAGCAAATCCCAGTACAATGGCATTCTGGATGTAAT GTAAAATGTAACATTCAAATTGCACTTGAAATCAACATACTCAAGAATCACATGGTTTTTACACATTAGTATGAATCAAT AAGCCTTAACAGAAGGAGTACTAGGTGGAGAAGTAGAACGACGTTCAGCACTCTTGGTGCAGGCTTGTCCTTTAATCCTT GAGGCAAGAGCATCCAAGAACCTATTATTCCACCCTCCATTAACAGCAGCAGAAGATGATATGGAAGCTGAAGCTACCCT GCCACAAGCATGATCAGCAGGGAAACGGTGCTTGAGGCACACCTTCACCTGGCAAGTTTTACAGGTGCTGGCATTAGAAA ATGTCAAAACCTCCTTGCAGCGCTTCACAGGGCAGATGGGTTTCTTCTTCTTGTTGGGATCACAGTTCCCAGACTTGAGG TGCCTCTTCAAAAGTGCCTCCTCCTCCTCTTGTCCCACTTGGCCTGTGGTCTCAATGGACATGGAACATGTTTCGCAGAC AACAACTTTCCTGCTGTTGTGGTCAGGTTTTGGGCATGCATGAGACTTGTAGGATCTATGTTCCACACAAAATACCTGTC ATTGCAAAACATGTTAATCATTCTGTTTCATGTTAATTTTTTATTAAATATAAAACTGGACCTTCGAGTTTGAAAATCCC CAAACTCGGGTTAAGAGAGGGTTTAGACTTGGAGTCCTTAAGCTAAATGACTAGGATTTGGAGGTCTGTGTACATCTCGA GTTTGGAAACTCCAAATCTAGACTCAGGGAGGGGTTAGCTTATACTCACTAGTCGCCATCCTCCAGCAGAAGACCTGGGC CGGGTAAGGCATGCAAAAGGTTACAGACCACGATTATAACCTCAAATTAATCAAGCTAGTTGTAACCCCTAATTAAACCA ATGTAATGCAGTCCCAAATAAATCAGTTAATTATAACATATTTAATCACTCATTAATCCTGTGATAAACACCAAAGCCCT CAAGTAATCCAAGAGACAAACATGTCTTTATAAGGGAGCTTGGTTCGGCAAGATACGACATTAGAGACCTAAAGTTGAAT ATTTTCCTATGCTTTGGCTTAATTCTAGTTTCTCCGTTGACACATTAAAATACAGGAAATTAGACCCGCGTCAAACCAAA CATTTGCTTGATCATTCTGTTTCATGTTAAATGTGTTTTAAATATAAAACAGCTCAATTGGAAGAAGTTTGATGAGAAGG AAAGGAAAAAGAGGAGATATGAAGAAATGTATAAAAATACCTGCTTGCAGGCGTCACATGTGAAAGGAAGGAAATCGAGC TGGTGGCAATCATGGTGTTGGCAGTGTTTACCCAAATCTGGAAAAGCTTCTGTTCCCCCTGATGCCATGGATTGATTAAG ATAAGATATTGTGATAGATTGGTTTTTGAGTTTGTGAAAGAACTATTAAAAACTTATGAGAACGGGGAGGGAATAAAC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0251300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACCTCCCAAGCTTGCTCCTTCGCCGTCACCGTTCCCTCCGTTGCCTCCCCTCTCCGGCGCCACCGCAATCTCCACGT TGTCCGAGCTCAAGTGGAACCATCAGAAAAATCTATTGAAATTATGAGGAAGTTCTCAGAGCAATATGCCCGTAAATCAG GAACATACTTTTGTGTGGACAAGAGTGTTACTTCTGTTGTTATCAAGGGGTTGGCTGACCATAAAGATTCATTGGGTGCA CCACTGTGTCCTTGCCGGCATTATGATGATAAACCTGCTGAGGCGCAACAGGGATTTTGGAATTGCCCATGTGTTCCAAT GAGAGAGAGGAAGGAGTGCCACTGCATGCTCTTTCTCACTCCTGAGAACGATTTTGCCGGCAAGGAACAGGCTATCACCT TGGATGAAATTAGAGAAACAACAGCAAATATGTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0251300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTSQACSFAVTVPSVASPLRRHRNLHVVRAQVEPSEKSIEIMRKFSEQYARKSGTYFCVDKSVTSVVIKGLADHKDSLGA PLCPCRHYDDKPAEAQQGFWNCPCVPMRERKECHCMLFLTPENDFAGKEQAITLDEIRETTANM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 4 4 - –
Phobius
SIGNAL_PEPTIDE
1 16 16 - –
Phobius
SIGNAL_PEPTIDE_H_REGION
5 12 8 - –
PANTHER
PTHR35113
10 144 135 6.2E-74
IPR004209
Phobius
SIGNAL_PEPTIDE_C_REGION
13 16 4 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
17 144 128 - –
Gene3D
G3DSA:3.90.460.10
30 144 115 9.5E-57
IPR036644
SUPERFAMILY
SSF57662
36 141 106 2.62E-42
IPR036644
Pfam
PF02943
39 138 100 2.3E-41
IPR004209

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016730
Molecular function Oxidoreductase activity, acting on iron-sulfur proteins as donors Catalysis of an oxidation-reduction (redox) reaction in which an iron-sulfur protein acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0251300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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