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LotjaGi2g1v0252500.1

Overview

Field	Value
Gene ID	LotjaGi2g1v0252500
Transcript ID	LotjaGi2g1v0252500.1
Lotus japonicus genome version	Gifu v1.2
Description	response regulator 22; TAIR: AT3G04280.1 response regulator 22; Swiss-Prot: sp\|Q9M8Y4\|ARR22_ARATH Two-component response regulator ARR22; TrEMBL-Plants: tr\|G7JJU6\|G7JJU6_MEDTR Response regulator receiver domain protein; Found in the gene: LotjaGi2g1v0252500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:71810059..71811393) extracted from Lotus japonicus Gifu genome v1.2.

AATCACCAAACTCCTTCAACCCAACTGGGCCGGGGGCCCATACGGGTTATAACAACTAAGCAGTAGAGAATTGGTTTACT TGCTGGTGGCGAACAGTTCTGCTAGCTCATCAGTAACAGTGGTCGTCTTATCGGAAGCGAAGGAGTCATCTTCCACCAGC AACCGCAAGGTTTGTCTTTCACCCAAAATTTCTTGATTATTCGTCGTGTGTATTCAAGCATTTGGTTTGGTATGAAGCTA ATCTTGTAATACTTTTTAATGTTTGTTATGGGTTGAAGGATCTCAGCGAATCGAACTCAAAAACTTTTAGTGTAGACGAT TTTGGGGATCTGATATGATCTTCACTTATATTCGATTTCTATATGTAAGGGGATATAAATCTATTCAGCTTGTGTCTAGT AACTTTTTGGCACCCTTATTCCTCCCCTTTGAGTGACATATAATGAAATGCTGAACTAAATAACTTCAAATTATTGGTTG ATTAAATTCATCCTTGTCTTCAATCTTGTGATCAATATTATAGGCTGATTTTAAATTTAATTTCTTTTGTGTATAATCTA GATCGGTTCATCCAACCATGAATTCCAACATTACTGGATTCAAACGACAAAGGAACTCTGAGGATGAGAGTTTGCCACTC GGAAAACGCCAATTAGATGGCATTCCTTGCATGAAGGTATTGCTAGTGGATGGAGAGACTGCATCCAGGGTCTGGATGCA AGGAATGCTAGCATCACTAGGCATTGAGACAGTCCCTGTGTATAGTGCTCAACATGCAATAATAGAATTGGAGACTCATG ATCATCGTGGACACTTTGACTTCATGTTCATTGATTGGTCTATTAAGAATGCACTTGAGGTGATCTCAGAAAATTTCTTT CTTCTTTAAATGTATCTTTACTTTGTCACATTAATTAATATCTGTCAGCAATTGAATCATGCTTGCATTCTTATGTAGCT GGTGAAGTGGATGCATTCCAGGGCGGTACCGAGCAAGATCGTGGGTATGTACACTAATGATGACACAGAGAGAAAGCGCC AGTTTTATAATGCTGGAGCTACTCTTTGTGTTAAGAAATCTATGGACCCAGCATCTGTAAGCCACACCATTGCACATCTT CGCAACATGTGAAGATAATTAAAGCCCTTTTGATATTGTTTCTTATTATGAATAGTGATGCAGGTTGTTGTTTGGTTTAG TTTTGTGACTGTCAGTTAAGTTTTTCAGGAGAGGTCTAGACTCTTTTATTTTAGTTCAAGTAGTGACAAATAAAGTGCTA TATGCATCGTGACTCTCTTATTTTAGTTCAAGTGACAAATAAACTTGCGACTTGC

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0252500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATTCCAACATTACTGGATTCAAACGACAAAGGAACTCTGAGGATGAGAGTTTGCCACTCGGAAAACGCCAATTAGA TGGCATTCCTTGCATGAAGGTATTGCTAGTGGATGGAGAGACTGCATCCAGGGTCTGGATGCAAGGAATGCTAGCATCAC TAGGCATTGAGACAGTCCCTGTGTATAGTGCTCAACATGCAATAATAGAATTGGAGACTCATGATCATCGTGGACACTTT GACTTCATGTTCATTGATTGGTCTATTAAGAATGCACTTGAGCTGGTGAAGTGGATGCATTCCAGGGCGGTACCGAGCAA GATCGTGGGTATGTACACTAATGATGACACAGAGAGAAAGCGCCAGTTTTATAATGCTGGAGCTACTCTTTGTGTTAAGA AATCTATGGACCCAGCATCTGTAAGCCACACCATTGCACATCTTCGCAACATGTGA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0252500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNSNITGFKRQRNSEDESLPLGKRQLDGIPCMKVLLVDGETASRVWMQGMLASLGIETVPVYSAQHAIIELETHDHRGHF DFMFIDWSIKNALELVKWMHSRAVPSKIVGMYTNDDTERKRQFYNAGATLCVKKSMDPASVSHTIAHLRNM

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	21	21	-	–
SUPERFAMILY	SSF52172 View details on SSF52172 Search for proteins/transripts with this domain View external data on SSF52172	30	148	119	6.12E-13	IPR011006 Show description in modal box View details on IPR011006 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR43228 View details on PTHR43228 Search for proteins/transripts with this domain View external data on PTHR43228	32	148	117	6.4E-14	–
PANTHER	PTHR43228:SF10 View details on PTHR43228:SF10 Search for proteins/transripts with this domain View external data on PTHR43228:SF10	32	148	117	6.4E-14	–
Gene3D	G3DSA:3.40.50.2300 View details on G3DSA:3.40.50.2300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2300	32	151	120	3.2E-13	–
SMART	SM00448 View details on SM00448 Search for proteins/transripts with this domain View external data on SM00448	32	145	114	9.1E-5	IPR001789 Show description in modal box View details on IPR001789 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50110 View details on PS50110 Search for proteins/transripts with this domain View external data on PS50110	33	149	117	18.06	IPR001789 Show description in modal box View details on IPR001789 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00072 View details on PF00072 Search for proteins/transripts with this domain View external data on PF00072	34	143	110	1.8E-7	IPR001789 Show description in modal box View details on IPR001789 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00156 View details on cd00156 Search for proteins/transripts with this domain View external data on cd00156	35	148	114	1.16926E-8	IPR001789 Show description in modal box View details on IPR001789 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0000160 View details of GO:0000160 AmiGO InterPro QuickGO	Biological process	Phosphorelay signal transduction system	A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.	Subterm of View details of GO:0035556

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0252500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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